CYP4B1 (cytochrome P450 family 4 subfamily B member 1) - Rat Genome Database

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Gene: CYP4B1 (cytochrome P450 family 4 subfamily B member 1) Homo sapiens
Analyze
Symbol: CYP4B1
Name: cytochrome P450 family 4 subfamily B member 1
RGD ID: 736540
HGNC Page HGNC:2644
Description: Predicted to enable monooxygenase activity and oxygen binding activity. Predicted to be involved in fatty acid metabolic process. Predicted to be located in endoplasmic reticulum membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CYPIVB1; cytochrome P450 4B1; cytochrome P450, family 4, subfamily B, polypeptide 1; cytochrome p450, subfamily 4b, polypeptide 1; cytochrome P450, subfamily IVB, polypeptide 1; cytochrome P450-HP; microsomal monooxygenase; P-450HP
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,799,046 - 46,819,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,757,838 - 46,819,413 (+)EnsemblGRCh38hg38GRCh38
GRCh37147,264,718 - 47,285,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36147,037,257 - 47,057,608 (+)NCBINCBI36Build 36hg18NCBI36
Build 34146,976,761 - 46,997,105NCBI
Celera145,552,027 - 45,572,396 (+)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,380,284 - 45,400,633 (+)NCBIHuRef
CHM1_1147,381,383 - 47,401,714 (+)NCBICHM1_1
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYP4B1Humanchronic obstructive pulmonary disease  IAGPRGD:1561856588554872ClinVar Annotator: match by term: Pulmonary disease, chronic obstructive, susceptibility toClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYP4B1Humanautism spectrum disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:35663546
CYP4B1Humanurinary bladder cancer  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18713828

1 to 20 of 176 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYP4B1Human1,2-dimethylhydrazine decreases expressionISORGD:1045764804641,2-Dimethylhydrazine results in decreased expression of CYP4B1 mRNACTDPMID:22206623
CYP4B1Human1-naphthyl isothiocyanate decreases expressionISORGD:248064804641-Naphthylisothiocyanate results in decreased expression of CYP4B1 mRNACTDPMID:30723492
CYP4B1Human17alpha-ethynylestradiol decreases expressionISORGD:24806480464Ethinyl Estradiol results in decreased expression of CYP4B1 mRNACTDPMID:16174780|PMID:17351261
CYP4B1Human17alpha-ethynylestradiol decreases expressionISORGD:104576480464Ethinyl Estradiol results in decreased expression of CYP4B1 mRNACTDPMID:16174780|PMID:17942748
CYP4B1Human17alpha-ethynylestradiol multiple interactionsISORGD:104576480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of CYP4B1 mRNACTDPMID:17942748
CYP4B1Human17alpha-ethynylestradiol affects expressionISORGD:104576480464Ethinyl Estradiol affects the expression of CYP4B1 mRNACTDPMID:17555576
CYP4B1Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of CYP4B1 mRNA; [Progesterone co-treated with more ...CTDPMID:17404688|PMID:30165855
CYP4B1Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of CYP4B1 mRNACTDPMID:31614463
CYP4B1Human17beta-estradiol decreases expressionISORGD:24806480464Estradiol results in decreased expression of CYP4B1 mRNACTDPMID:26945725
CYP4B1Human17beta-estradiol decreases expressionISORGD:104576480464Estradiol results in decreased expression of CYP4B1 mRNACTDPMID:14664709|PMID:39298647
CYP4B1Human2,2',4,4'-Tetrabromodiphenyl ether increases expressionISORGD:248064804642,2',4,4'-tetrabromodiphenyl ether results in increased expression of CYP4B1 mRNACTDPMID:20566336
CYP4B1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:24806480464Tetrachlorodibenzodioxin results in decreased expression of CYP4B1 mRNACTDPMID:21215274
CYP4B1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:24806480464Tetrachlorodibenzodioxin results in increased expression of CYP4B1 mRNACTDPMID:32109520
CYP4B1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:104576480464Tetrachlorodibenzodioxin results in decreased expression of CYP4B1 mRNACTDPMID:28213091
CYP4B1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CYP4B1 mRNACTDPMID:16985168|PMID:20106945|PMID:26159488
CYP4B1Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:104576480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in decreased expression of CYP4B1 mRNA; Tetrachlorodibenzodioxin promotes the more ...CTDPMID:17942748|PMID:28213091
CYP4B1Human2,3,7,8-Tetrachlorodibenzofuran increases expressionISORGD:248064804642,3,7,8-tetrachlorodibenzofuran results in increased expression of CYP4B1 mRNACTDPMID:32109520
CYP4B1Human2-naphthylamine increases metabolic processingISORGD:24806480464CYP4B1 protein results in increased metabolism of 2-NaphthylamineCTDPMID:9310344
CYP4B1Human2-naphthylamine increases metabolic processingISORGD:104576480464CYP4B1 protein results in increased metabolism of 2-NaphthylamineCTDPMID:9310344
CYP4B1Human3,3',4,4',5-pentachlorobiphenyl decreases expressionISORGD:248064804643,4,5,3',4'-pentachlorobiphenyl results in decreased expression of CYP4B1 mRNACTDPMID:23196670

1 to 20 of 176 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYP4B1Humanbiphenyl metabolic process involved_inIEAUniProtKB:P15129|ensembl:ENSRNOP00000013321150520179 EnsemblGO_REF:0000107
CYP4B1Humanbiphenyl metabolic process  ISORGD:24809068941 RGDPMID:9310344|REF_RGD_ID:1626420
CYP4B1Humanfatty acid metabolic process involved_inTAS 150520179 ReactomeReactome:R-HSA-211935

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYP4B1Humanendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
CYP4B1Humanendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
CYP4B1Humanendoplasmic reticulum membrane located_inTAS 150520179 ReactomeReactome:R-HSA-211924
CYP4B1Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

Molecular Function
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYP4B1Humanheme binding enablesIEAInterPro:IPR001128|InterPro:IPR002401|InterPro:IPR036396150520179 InterProGO_REF:0000002
CYP4B1Humanheterocyclic compound binding  ISOCHEBI:1737649068941 RGDPMID:8248926|REF_RGD_ID:1626415
CYP4B1Humanheterocyclic compound binding enablesIEAUniProtKB:P15129|ensembl:ENSRNOP00000013321150520179 EnsemblGO_REF:0000107
CYP4B1Humaniron ion binding enablesIEAInterPro:IPR001128|InterPro:IPR002401|InterPro:IPR017972|InterPro:IPR036396150520179 InterProGO_REF:0000002
CYP4B1Humanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
CYP4B1Humanmonooxygenase activity enablesIEAUniProtKB-KW:KW-0503150520179 UniProtGO_REF:0000043
CYP4B1Humanmonooxygenase activity enablesIEAARBA:ARBA00028788150520179 UniProtGO_REF:0000117
CYP4B1Humanmonooxygenase activity enablesTAS 150520179 ReactomeReactome:R-HSA-211924
CYP4B1Humanmonooxygenase activity enablesIEAInterPro:IPR001128|InterPro:IPR002401|InterPro:IPR036396150520179 InterProGO_REF:0000002
CYP4B1Humanoxidoreductase activity enablesIEAUniProtKB-KW:KW-0560150520179 UniProtGO_REF:0000043
CYP4B1Humanoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen enablesIEAInterPro:IPR001128|InterPro:IPR002401|InterPro:IPR017972|InterPro:IPR036396150520179 InterProGO_REF:0000002
CYP4B1Humanoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen enablesIEARHEA:17149150520179 RHEAGO_REF:0000116
CYP4B1Humanoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen enablesIEAEC:1.14.14.1150520179 UniProtGO_REF:0000003
CYP4B1Humanoxygen binding enablesTAS 150520179 PMID:2574990PINCPMID:2574990
1 to 14 of 14 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYP4B1Humanphase I biotransformation pathway via cytochrome P450  ISORGD:24801626420 RGD 
CYP4B1Humanphase I biotransformation pathway via cytochrome P450  ISORGD:24801626415 RGD 

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Mutagenic activation of urinary bladder carcinogens by CYP4B1 and the presence of CYP4B1 in bladder mucosa. Imaoka S, etal., Biochem Pharmacol. 1997 Sep 15;54(6):677-83.
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. CYP4B1 activates 4-ipomeanol in rat lung. Verschoyle RD, etal., Toxicol Appl Pharmacol. 1993 Dec;123(2):193-8.
PMID:2298205   PMID:2574990   PMID:7894498   PMID:8125298   PMID:8313365   PMID:8694864   PMID:8889548   PMID:9202751   PMID:9364212   PMID:9493761   PMID:9498238   PMID:10768437  
PMID:11062028   PMID:11669629   PMID:11737226   PMID:11767004   PMID:12142726   PMID:12477932   PMID:12837283   PMID:15006160   PMID:15028279   PMID:15128046   PMID:15499177   PMID:16344560  
PMID:18660489   PMID:18713828   PMID:19040121   PMID:19074885   PMID:19343046   PMID:19898482   PMID:19913121   PMID:20379614   PMID:20628086   PMID:21873635   PMID:22675492   PMID:25247810  
PMID:26252103   PMID:26355749   PMID:28514442   PMID:30803053   PMID:31801692   PMID:31862882   PMID:32054340   PMID:33592039   PMID:36307788   PMID:36768362   PMID:37950293   PMID:38041008  



CYP4B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,799,046 - 46,819,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,757,838 - 46,819,413 (+)EnsemblGRCh38hg38GRCh38
GRCh37147,264,718 - 47,285,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36147,037,257 - 47,057,608 (+)NCBINCBI36Build 36hg18NCBI36
Build 34146,976,761 - 46,997,105NCBI
Celera145,552,027 - 45,572,396 (+)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,380,284 - 45,400,633 (+)NCBIHuRef
CHM1_1147,381,383 - 47,401,714 (+)NCBICHM1_1
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBIT2T-CHM13v2.0
Cyp4b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394115,481,895 - 115,504,918 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,481,922 - 115,504,920 (-)EnsemblGRCm39 Ensembl
GRCm384115,624,698 - 115,647,721 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4115,624,725 - 115,647,723 (-)EnsemblGRCm38mm10GRCm38
MGSCv374115,297,333 - 115,320,310 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,122,660 - 115,145,637 (-)NCBIMGSCv36mm8
Celera4114,360,727 - 114,383,719 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.06NCBI
Cyp4b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,375,807 - 134,413,635 (-)NCBIGRCr8
mRatBN7.25129,139,019 - 129,176,860 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,139,038 - 129,156,348 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5131,749,529 - 131,766,903 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,504,409 - 133,521,783 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,526,563 - 133,543,937 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05134,508,728 - 134,526,103 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5134,508,730 - 134,526,089 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,299,551 - 138,316,860 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45135,917,327 - 135,934,636 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15135,922,552 - 135,939,862 (-)NCBI
Celera5127,676,727 - 127,694,036 (-)NCBICelera
RH 3.4 Map5823.3RGD
Cytogenetic Map5q35NCBI
LOC102012414
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,378,980 - 11,556,544 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,539,467 - 11,556,519 (-)NCBIChiLan1.0ChiLan1.0
CYP4B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21179,984,908 - 180,003,684 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,126,616 - 179,145,387 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0146,107,787 - 46,127,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1147,462,178 - 47,481,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl147,462,178 - 47,481,502 (+)Ensemblpanpan1.1panPan2
CYP4B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11513,676,631 - 13,694,483 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1513,676,371 - 13,694,705 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1513,796,940 - 13,814,798 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01513,826,980 - 13,844,834 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1513,826,737 - 13,844,877 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11513,628,060 - 13,645,902 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01513,696,377 - 13,714,240 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01513,765,891 - 13,783,754 (-)NCBIUU_Cfam_GSD_1.0
LOC101955242
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,881,092 - 61,957,546 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,767,371 - 27,782,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,705,874 - 27,782,328 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP4B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6164,718,444 - 164,737,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16164,718,393 - 164,737,693 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,210,031 - 152,229,243 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYP4B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12085,997,796 - 86,018,649 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2085,996,269 - 86,018,055 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,987,875 - 31,007,108 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101725929
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,663,940 - 2,684,171 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,664,057 - 2,683,527 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in CYP4B1
66 total Variants

1 to 10 of 72 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 1p34.3-33(chr1:39479787-47688131)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|See cases [RCV000051817] Chr1:39479787..47688131 [GRCh38]
Chr1:39945459..48153803 [GRCh37]
Chr1:39718046..47926390 [NCBI36]
Chr1:1p34.3-33
pathogenic
NM_000779.3(CYP4B1):c.1293C>T (p.Ser431=) single nucleotide variant Malignant melanoma [RCV000060202] Chr1:46818154 [GRCh38]
Chr1:47283826 [GRCh37]
Chr1:47056413 [NCBI36]
Chr1:1p33
not provided
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p34.1-33(chr1:46747177-47280720)x3 copy number gain See cases [RCV000449344] Chr1:46747177..47280720 [GRCh37]
Chr1:1p34.1-33
uncertain significance
GRCh37/hg19 1p34.1-32.3(chr1:45303358-52157856)x1 copy number loss See cases [RCV000448358] Chr1:45303358..52157856 [GRCh37]
Chr1:1p34.1-32.3
likely pathogenic
NM_001099772.2(CYP4B1):c.884_885del (p.Asp295fs) deletion not specified [RCV000455155] Chr1:46815075..46815076 [GRCh38]
Chr1:47280747..47280748 [GRCh37]
Chr1:1p33
benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_001099772.2(CYP4B1):c.1481G>A (p.Arg494His) single nucleotide variant not specified [RCV004282193] Chr1:46818756 [GRCh38]
Chr1:47284428 [GRCh37]
Chr1:1p33
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
1 to 10 of 72 rows

Predicted Target Of
Summary Value
Count of predictions:3951
Count of miRNA genes:1027
Interacting mature miRNAs:1263
Transcripts:ENST00000271153, ENST00000371919, ENST00000371923, ENST00000413093, ENST00000452782, ENST00000464439, ENST00000468637, ENST00000481248, ENST00000497005, ENST00000526297, ENST00000529715, ENST00000534708, ENST00000546128
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597316346GWAS1412420_HX-21258 measurement QTL GWAS1412420 (human)6e-22X-21258 measurement14681610846816109Human
2314561GLUCO47_HGlucose level QTL 47 (human)1.1Glucose level14477336070773360Human
597282778GWAS1378852_HCOVID-19 QTL GWAS1378852 (human)1e-08COVID-1914681105646811057Human
407027368GWAS676344_Htestosterone measurement QTL GWAS676344 (human)0.000008testosterone measurementserum testosterone level (CMO:0000568)14681925146819252Human
597234068GWAS1330142_Habdominal fat cell number QTL GWAS1330142 (human)0.000003abdominal fat cell number14679975746799758Human
407047629GWAS696605_Hserum metabolite measurement QTL GWAS696605 (human)4e-12serum metabolite measurement14681615546816156Human
597138648GWAS1234722_H10-undecenoate 11:1n1 measurement QTL GWAS1234722 (human)5e-2210-undecenoate 11:1n1 measurement14681316746813168Human
597136391GWAS1232465_HX-24748 measurement QTL GWAS1232465 (human)8e-17X-24748 measurement14681783346817834Human
597188044GWAS1284118_Hglycine conjugate of C10H12O2 measurement QTL GWAS1284118 (human)2e-10glycine conjugate of C10H12O2 measurement14680956946809570Human
597162467GWAS1258541_Hpeptide measurement QTL GWAS1258541 (human)0.0000001peptide metabolism trait (VT:0010634)14681885446818855Human

1 to 10 of 14 rows
CYP4B1_1569  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37147,284,368 - 47,285,027UniSTSGRCh37
Build 36147,056,955 - 47,057,614RGDNCBI36
Celera145,571,743 - 45,572,402RGD
HuRef145,399,980 - 45,400,639UniSTS
D1S3695  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map1p34-p12UniSTS
Cytogenetic Map6q27UniSTS
D1S3259  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p34-p12UniSTS
GeneMap99-GB4 RH Map1145.5UniSTS
GeneMap99-G3 RH Map12378.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2392 2788 2227 4741 1556 2100 5 461 1404 301 2136 6518 5922 21 3625 1 804 1704 1532 172 1


1 to 30 of 38 rows
RefSeq Transcripts NG_007939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001099772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_178057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_178058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_178059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_178060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_178061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_946559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF491285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL356793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL593856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY064484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY064485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY064486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY151048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY151049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM977596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM982575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 38 rows

Ensembl Acc Id: ENST00000271153   ⟹   ENSP00000271153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,799,046 - 46,819,413 (+)Ensembl
Ensembl Acc Id: ENST00000371919   ⟹   ENSP00000360987
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,799,082 - 46,818,814 (+)Ensembl
Ensembl Acc Id: ENST00000371923   ⟹   ENSP00000360991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,799,046 - 46,819,413 (+)Ensembl
Ensembl Acc Id: ENST00000413093
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,757,878 - 46,790,499 (+)Ensembl
Ensembl Acc Id: ENST00000452782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,811,073 - 46,818,842 (+)Ensembl
Ensembl Acc Id: ENST00000464439   ⟹   ENSP00000433068
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,799,064 - 46,819,349 (+)Ensembl
Ensembl Acc Id: ENST00000468637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,811,103 - 46,817,181 (+)Ensembl
Ensembl Acc Id: ENST00000481248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,815,074 - 46,817,357 (+)Ensembl
Ensembl Acc Id: ENST00000497005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,817,048 - 46,819,015 (+)Ensembl
Ensembl Acc Id: ENST00000526297   ⟹   ENSP00000438995
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,806,807 - 46,813,988 (+)Ensembl
Ensembl Acc Id: ENST00000529715   ⟹   ENSP00000443212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,799,051 - 46,815,411 (+)Ensembl
Ensembl Acc Id: ENST00000534708   ⟹   ENSP00000433367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,798,998 - 46,818,670 (+)Ensembl
Ensembl Acc Id: ENST00000546128
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,757,838 - 46,810,850 (+)Ensembl
Ensembl Acc Id: ENST00000614163   ⟹   ENSP00000484629
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,799,082 - 46,818,814 (+)Ensembl
Ensembl Acc Id: ENST00000640628   ⟹   ENSP00000492115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,798,998 - 46,814,759 (+)Ensembl
RefSeq Acc Id: NM_000779   ⟹   NP_000770
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,799,046 - 46,819,413 (+)NCBI
GRCh37147,264,670 - 47,285,021 (+)ENTREZGENE
GRCh37147,264,670 - 47,285,021 (+)NCBI
Build 36147,037,257 - 47,057,608 (+)NCBI Archive
HuRef145,380,284 - 45,400,633 (+)ENTREZGENE
CHM1_1147,381,383 - 47,401,714 (+)NCBI
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001099772   ⟹   NP_001093242
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,799,046 - 46,819,413 (+)NCBI
GRCh37147,264,670 - 47,285,021 (+)ENTREZGENE
GRCh37147,264,670 - 47,285,021 (+)NCBI
Build 36147,037,257 - 47,057,608 (+)NCBI Archive
HuRef145,380,284 - 45,400,633 (+)ENTREZGENE
CHM1_1147,381,383 - 47,401,714 (+)NCBI
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001319161   ⟹   NP_001306090
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,799,046 - 46,819,413 (+)NCBI
CHM1_1147,381,383 - 47,401,714 (+)NCBI
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001319162   ⟹   NP_001306091
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,799,046 - 46,819,413 (+)NCBI
CHM1_1147,381,383 - 47,401,714 (+)NCBI
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001319163   ⟹   NP_001306092
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,799,046 - 46,819,413 (+)NCBI
CHM1_1147,381,383 - 47,401,714 (+)NCBI
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
Sequence:
RefSeq Acc Id: NR_135003
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,799,046 - 46,819,413 (+)NCBI
CHM1_1147,381,383 - 47,401,714 (+)NCBI
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
Sequence:
RefSeq Acc Id: NR_178057
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
RefSeq Acc Id: NR_178058
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
RefSeq Acc Id: NR_178059
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
RefSeq Acc Id: NR_178060
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
RefSeq Acc Id: NR_178061
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0146,676,425 - 46,696,812 (+)NCBI
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: NP_001093242   ⟸   NM_001099772
- Peptide Label: isoform a
- UniProtKB: P13584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_000770   ⟸   NM_000779
- Peptide Label: isoform b
- UniProtKB: Q8WWU9 (UniProtKB/Swiss-Prot),   Q8WWF2 (UniProtKB/Swiss-Prot),   Q8TD85 (UniProtKB/Swiss-Prot),   Q1HBI2 (UniProtKB/Swiss-Prot),   Q8WWV0 (UniProtKB/Swiss-Prot),   P13584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001306090   ⟸   NM_001319161
- Peptide Label: isoform c
- UniProtKB: Q8IZB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306091   ⟸   NM_001319162
- Peptide Label: isoform d
- UniProtKB: B4DV41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306092   ⟸   NM_001319163
- Peptide Label: isoform e
- UniProtKB: B4DV41 (UniProtKB/TrEMBL)
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-P13584-F1-model_v2 AlphaFold P13584 1-511 view protein structure

RGD ID:6855446
Promoter ID:EPDNEW_H888
Type:multiple initiation site
Name:CYP4B1_1
Description:cytochrome P450 family 4 subfamily B member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,799,046 - 46,799,106EPDNEW


1 to 40 of 47 rows
Database
Acc Id
Source(s)
COSMIC CYP4B1 COSMIC
Ensembl Genes ENSG00000142973 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000271153 ENTREZGENE
  ENST00000271153.8 UniProtKB/Swiss-Prot
  ENST00000371919 ENTREZGENE
  ENST00000371923 ENTREZGENE
  ENST00000371923.9 UniProtKB/Swiss-Prot
  ENST00000464439 ENTREZGENE
Gene3D-CATH 1.10.630.10 UniProtKB/Swiss-Prot
GTEx ENSG00000142973 GTEx
HGNC ID HGNC:2644 ENTREZGENE
Human Proteome Map CYP4B1 Human Proteome Map
InterPro Cyt_P450 UniProtKB/Swiss-Prot
  Cyt_P450_CS UniProtKB/Swiss-Prot
  Cyt_P450_E_grp-I UniProtKB/Swiss-Prot
  Cyt_P450_sf UniProtKB/Swiss-Prot
  Cytochrome_P450_Monoox UniProtKB/Swiss-Prot
KEGG Report hsa:1580 UniProtKB/Swiss-Prot
NCBI Gene 1580 ENTREZGENE
OMIM 124075 OMIM
PANTHER CYTOCHROME P450 4B1 UniProtKB/Swiss-Prot
  CYTOCHROME P450 FAMILY 4 UniProtKB/Swiss-Prot
Pfam p450 UniProtKB/Swiss-Prot
PharmGKB PA27119 PharmGKB
PRINTS EP450I UniProtKB/Swiss-Prot
  P450 UniProtKB/Swiss-Prot
PROSITE CYTOCHROME_P450 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48264 UniProtKB/Swiss-Prot
UniProt B4DV41 ENTREZGENE, UniProtKB/TrEMBL
  CP4B1_HUMAN UniProtKB/Swiss-Prot
  E9PL36_HUMAN UniProtKB/TrEMBL
  E9PML0_HUMAN UniProtKB/TrEMBL
  F5H1Q8_HUMAN UniProtKB/TrEMBL
  F5H5Q6_HUMAN UniProtKB/TrEMBL
  P13584 ENTREZGENE
  Q1HBI2 ENTREZGENE
  Q8IZB0 ENTREZGENE, UniProtKB/TrEMBL
  Q8TD85 ENTREZGENE
  Q8WWF2 ENTREZGENE
  Q8WWU9 ENTREZGENE
1 to 40 of 47 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 CYP4B1  cytochrome P450 family 4 subfamily B member 1  CYP4B1  cytochrome P450, family 4, subfamily B, polypeptide 1  Symbol and/or name change 5135510 APPROVED