Slc6a13 (solute carrier family 6 (neurotransmitter transporter, GABA), member 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc6a13 (solute carrier family 6 (neurotransmitter transporter, GABA), member 13) Mus musculus
Analyze
Symbol: Slc6a13
Name: solute carrier family 6 (neurotransmitter transporter, GABA), member 13
RGD ID: 733726
MGI Page MGI
Description: Enables gamma-aminobutyric acid:sodium:chloride symporter activity and taurine:sodium symporter activity. Involved in taurine transmembrane transport. Located in basolateral plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and liver and biliary system. Orthologous to human SLC6A13 (solute carrier family 6 member 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gabt; Gabt3; gamma-aminobutyric acid (GABA-A) transporter 3; Gat; GAT-2; GAT-3; Gat2; GAT3; sodium- and chloride-dependent GABA transporter 2; sodium- and chloride-dependent GABA transporter 3; solute carrier family 6 member 13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396121,277,247 - 121,314,680 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6121,277,186 - 121,314,692 (+)EnsemblGRCm39 Ensembl
GRCm386121,300,288 - 121,337,721 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6121,300,227 - 121,337,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv376121,250,314 - 121,287,736 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366121,265,915 - 121,303,337 (+)NCBIMGSCv36mm8
Celera6123,134,593 - 123,173,892 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
alachlor  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
calcium silicate  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
clofibric acid  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP)
dioxygen  (EXP)
diquat  (EXP)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
flavonoids  (ISO)
fluconazole  (ISO)
flutamide  (ISO)
furan  (ISO)
gamma-aminobutyric acid  (ISO)
graphite  (ISO)
GW 4064  (EXP)
hydralazine  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methidathion  (EXP)
methyl methanesulfonate  (ISO)
Muraglitazar  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nitrofen  (ISO)
O-methyleugenol  (ISO)
paracetamol  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SCH 23390  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
succimer  (EXP)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
tremolite asbestos  (EXP)
triadimefon  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8420981   PMID:8889548   PMID:8956109   PMID:10348670   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12595533   PMID:14681479   PMID:15489334  
PMID:16125675   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17452023   PMID:18287559   PMID:18975268   PMID:18985723   PMID:19521566   PMID:21267068   PMID:21386911   PMID:21677750  
PMID:21873635   PMID:22896705   PMID:24952961   PMID:25131634   PMID:26073538   PMID:27063791   PMID:30270321   PMID:30344048   PMID:33932339   PMID:35797984   PMID:36522157  


Genomics

Comparative Map Data
Slc6a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396121,277,247 - 121,314,680 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6121,277,186 - 121,314,692 (+)EnsemblGRCm39 Ensembl
GRCm386121,300,288 - 121,337,721 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6121,300,227 - 121,337,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv376121,250,314 - 121,287,736 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366121,265,915 - 121,303,337 (+)NCBIMGSCv36mm8
Celera6123,134,593 - 123,173,892 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.22NCBI
SLC6A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812220,622 - 262,836 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12220,621 - 262,873 (-)EnsemblGRCh38hg38GRCh38
GRCh3712329,788 - 372,002 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612200,052 - 242,263 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412200,051 - 242,263NCBI
Celera121,938,637 - 1,980,875 (-)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef12182,903 - 225,079 (-)NCBIHuRef
CHM1_112328,777 - 371,038 (-)NCBICHM1_1
T2T-CHM13v2.012217,551 - 259,667 (-)NCBIT2T-CHM13v2.0
Slc6a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84156,211,381 - 156,248,491 (+)NCBIGRCr8
mRatBN7.24154,539,246 - 154,577,784 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,540,468 - 154,576,152 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4160,806,682 - 160,842,331 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04156,590,166 - 156,625,811 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04155,213,564 - 155,249,248 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04153,874,942 - 153,912,185 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4153,874,852 - 153,912,155 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,962,968 - 221,000,197 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44157,736,264 - 157,771,945 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14157,981,199 - 158,016,881 (+)NCBI
Celera4143,379,280 - 143,414,859 (+)NCBICelera
Cytogenetic Map4q42NCBI
Slc6a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554546,866,740 - 6,940,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554546,866,740 - 6,940,686 (+)NCBIChiLan1.0ChiLan1.0
SLC6A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2105,705,028 - 5,756,691 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1125,701,785 - 5,761,918 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012279,434 - 334,226 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112255,141 - 296,926 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12255,141 - 296,926 (-)Ensemblpanpan1.1panPan2
SLC6A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12742,302,762 - 42,338,911 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2742,270,448 - 42,336,464 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,345,500 - 4,381,643 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02742,660,870 - 42,697,019 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2742,660,893 - 42,694,550 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12742,601,961 - 42,637,965 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02742,573,532 - 42,609,397 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,705,273 - 3,741,637 (+)NCBIUU_Cfam_GSD_1.0
Slc6a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945108,728,385 - 108,767,931 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936606415,177 - 455,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936606416,170 - 455,720 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,577,197 - 67,614,054 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1567,574,149 - 67,617,513 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,865,018 - 69,905,417 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111223,912 - 274,499 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11223,793 - 264,719 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660638,072,317 - 8,116,503 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Slc6a13
1419 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:517
Count of miRNA genes:355
Interacting mature miRNAs:399
Transcripts:ENSMUST00000064580, ENSMUST00000142021, ENSMUST00000142144, ENSMUST00000142419
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse

Markers in Region
RH136075  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386121,322,626 - 121,322,804UniSTSGRCm38
MGSCv376121,272,644 - 121,272,822UniSTSGRCm37
Celera6123,158,727 - 123,158,905UniSTS
Cytogenetic Map6F1UniSTS
UniSTS:225232  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386121,301,351 - 121,301,518UniSTSGRCm38
MGSCv376121,251,369 - 121,251,536UniSTSGRCm37
Celera6123,135,648 - 123,135,815UniSTS
Cytogenetic Map6F1UniSTS
Slc6a13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F1UniSTS
Gabt3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386121,337,353 - 121,337,553UniSTSGRCm38
MGSCv376121,287,371 - 121,287,571UniSTSGRCm37
Celera6123,173,527 - 123,173,727UniSTS
Cytogenetic Map6F1UniSTS
cM Map6 UniSTS
cM MapUN UniSTS
Slc6a13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001379107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000064580   ⟹   ENSMUSP00000066779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6121,277,186 - 121,314,692 (+)Ensembl
GRCm38.p6 Ensembl6121,300,227 - 121,337,733 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6121,277,248 - 121,310,550 (+)Ensembl
GRCm38.p6 Ensembl6121,300,289 - 121,333,591 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6121,277,248 - 121,280,252 (+)Ensembl
GRCm38.p6 Ensembl6121,300,289 - 121,303,293 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142419   ⟹   ENSMUSP00000120689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6121,277,741 - 121,301,289 (+)Ensembl
GRCm38.p6 Ensembl6121,300,782 - 121,324,330 (+)Ensembl
RefSeq Acc Id: NM_001379107   ⟹   NP_001366036
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,699 - 121,314,680 (+)NCBI
GRCm386121,300,740 - 121,337,721 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379108   ⟹   NP_001366037
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,280,598 - 121,314,680 (+)NCBI
GRCm386121,303,639 - 121,337,721 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001409769   ⟹   NP_001396698
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,247 - 121,314,680 (+)NCBI
RefSeq Acc Id: NM_001409772   ⟹   NP_001396701
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,247 - 121,280,255 (+)NCBI
RefSeq Acc Id: NM_144512   ⟹   NP_653095
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,247 - 121,314,680 (+)NCBI
GRCm386121,300,288 - 121,337,721 (+)NCBI
MGSCv376121,250,314 - 121,287,736 (+)RGD
Celera6123,134,593 - 123,173,892 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176894
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,247 - 121,314,680 (+)NCBI
RefSeq Acc Id: NR_176895
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,247 - 121,314,680 (+)NCBI
RefSeq Acc Id: NR_176896
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,247 - 121,314,680 (+)NCBI
RefSeq Acc Id: XM_006505538   ⟹   XP_006505601
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,277,699 - 121,314,680 (+)NCBI
GRCm386121,300,740 - 121,337,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241211   ⟹   XP_011239513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396121,304,906 - 121,314,680 (+)NCBI
GRCm386121,327,947 - 121,337,721 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_653095   ⟸   NM_144512
- Peptide Label: isoform a
- UniProtKB: P31649 (UniProtKB/Swiss-Prot),   Q3UEF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505601   ⟸   XM_006505538
- Peptide Label: isoform X1
- UniProtKB: Q3UEF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239513   ⟸   XM_011241211
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001366036   ⟸   NM_001379107
- Peptide Label: isoform a
- UniProtKB: P31649 (UniProtKB/Swiss-Prot),   Q3UEF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001366037   ⟸   NM_001379108
- Peptide Label: isoform b
- UniProtKB: Q3UEF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000066779   ⟸   ENSMUST00000064580
RefSeq Acc Id: ENSMUSP00000120689   ⟸   ENSMUST00000142419
RefSeq Acc Id: NP_001396698   ⟸   NM_001409769
- Peptide Label: isoform c
RefSeq Acc Id: NP_001396701   ⟸   NM_001409772
- Peptide Label: isoform d
- UniProtKB: Q8CF74 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P31649-F1-model_v2 AlphaFold P31649 1-602 view protein structure

Promoters
RGD ID:6839996
Promoter ID:MM_KWN:47449
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000057266,   OTTMUST00000057267,   OTTMUST00000057268,   OTTMUST00000057269
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366121,250,286 - 121,250,786 (+)MPROMDB
RGD ID:6848036
Promoter ID:MM_ACW:42612
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:SLC6A13.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366121,285,346 - 121,285,846 (+)MPROMDB
RGD ID:6890874
Promoter ID:EPDNEW_M8888
Type:single initiation site
Name:Slc6a13_1
Description:Mus musculus solute carrier family 6 (neurotransmitter transporter,GABA), member 13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386121,300,288 - 121,300,348EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95629 AgrOrtholog
Ensembl Genes ENSMUSG00000030108 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000064580 ENTREZGENE
  ENSMUST00000064580.14 UniProtKB/Swiss-Prot
  ENSMUST00000142144 ENTREZGENE
  ENSMUST00000142419.2 UniProtKB/TrEMBL
InterPro Na/ntran_symport UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/ntran_symport_GABA_GAT2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNS_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14412 UniProtKB/Swiss-Prot
MGD MGI:95629 ENTREZGENE
NCBI Gene 14412 ENTREZGENE
PANTHER PTHR11616 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc6a13 PhenoGen
PRINTS GAT2TRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NANEUSMPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YWZ5_MOUSE UniProtKB/TrEMBL
  P31649 ENTREZGENE
  Q3UEF3 ENTREZGENE, UniProtKB/TrEMBL
  Q8CF74 ENTREZGENE, UniProtKB/TrEMBL
  Q8VC78_MOUSE UniProtKB/TrEMBL
  S6A13_MOUSE UniProtKB/Swiss-Prot