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Gene: SLC6A13 (solute carrier family 6 member 13) Sus scrofa

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Symbol:

SLC6A13

Name:

solute carrier family 6 member 13

RGD ID:

14062255

Description:

ENCODES a protein that exhibits amino acid binding (ortholog); creatine transmembrane transporter activity (ortholog); gamma-aminobutyric acid transmembrane transporter activity (ortholog); INVOLVED IN creatine transmembrane transport (ortholog); gamma-aminobutyric acid import (ortholog); neurotransmitter transport (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN basolateral plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sodium- and chloride-dependent GABA transporter 2; solute carrier family 6 (neurotransmitter transporter, GABA), member 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	67,577,197 - 67,614,054 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	67,574,149 - 67,617,513 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	69,865,018 - 69,905,417 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amino acid import across plasma membrane (IEA)

amino acid transport (IBA)

creatine transmembrane transport (ISO)

gamma-aminobutyric acid import (ISO)

gamma-aminobutyric acid transport (IEA)

monocarboxylic acid transport (IEA)

neurotransmitter transport (IEA,ISO)

nitrogen compound transport (ISO)

sodium ion transmembrane transport (IBA)

taurine transmembrane transport (ISO)

transmembrane transport (IEA)

Cellular Component

basolateral plasma membrane (IEA)

cell projection (IBA)

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

amino acid binding (ISO)

amino acid transmembrane transporter activity (IEA)

amino acid:sodium symporter activity (IEA)

creatine transmembrane transporter activity (ISO)

gamma-aminobutyric acid transmembrane transporter activity (ISO)

gamma-aminobutyric acid:sodium:chloride symporter activity (IBA,IEA,ISO)

metal ion binding (IEA)

monocarboxylic acid transmembrane transporter activity (IEA)

protein binding (ISO)

symporter activity (IEA)

taurine:sodium symporter activity (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SLC6A13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	67,577,197 - 67,614,054 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	67,574,149 - 67,617,513 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	69,865,018 - 69,905,417 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC6A13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	220,622 - 262,836 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	220,621 - 262,873 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	329,788 - 372,002 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	200,052 - 242,263 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	200,051 - 242,263	NCBI
Celera	12	1,938,637 - 1,980,875 (-)	NCBI		Celera
Cytogenetic Map	12	p13.33	NCBI
HuRef	12	182,903 - 225,079 (-)	NCBI		HuRef
CHM1_1	12	328,777 - 371,038 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	217,551 - 259,667 (-)	NCBI		T2T-CHM13v2.0

Slc6a13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	121,277,247 - 121,314,680 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	121,277,186 - 121,314,692 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	121,300,288 - 121,337,721 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	121,300,227 - 121,337,733 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	121,250,314 - 121,287,736 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	121,265,915 - 121,303,337 (+)	NCBI		MGSCv36	mm8
Celera	6	123,134,593 - 123,173,892 (+)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	57.22	NCBI

Slc6a13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	156,211,381 - 156,248,491 (+)	NCBI		GRCr8
mRatBN7.2	4	154,539,246 - 154,577,784 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	154,540,468 - 154,576,152 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	160,806,682 - 160,842,331 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	156,590,166 - 156,625,811 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	155,213,564 - 155,249,248 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	153,874,942 - 153,912,185 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	153,874,852 - 153,912,155 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	157,736,264 - 157,771,945 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	157,981,199 - 158,016,881 (+)	NCBI
Celera	4	143,379,280 - 143,414,859 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Slc6a13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	6,866,740 - 6,940,734 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	6,866,740 - 6,940,686 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC6A13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	5,705,028 - 5,756,691 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	5,701,785 - 5,761,918 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	279,434 - 334,226 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	255,141 - 296,926 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	255,141 - 296,926 (-)	Ensembl	panpan1.1		panPan2

SLC6A13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	42,302,762 - 42,338,911 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	42,270,448 - 42,336,464 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	4,345,500 - 4,381,643 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	42,660,870 - 42,697,019 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	42,660,893 - 42,694,550 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	42,601,961 - 42,637,965 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	42,573,532 - 42,609,397 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	3,705,273 - 3,741,637 (+)	NCBI		UU_Cfam_GSD_1.0

Slc6a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	108,728,385 - 108,767,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936606	415,177 - 455,721 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936606	416,170 - 455,720 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC6A13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	223,912 - 274,499 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	223,793 - 264,719 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	8,072,317 - 8,116,503 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in SLC6A13
1601 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	mesenchyme	mesoderm	nervous system	renal system	reproductive system
3	1	23	3	2	3	23	1	4

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005664093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP102700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP102715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01080188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000024761 ⟹ ENSSSCP00000026627

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	67,577,544 - 67,614,054 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000076285 ⟹ ENSSSCP00000063178

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	67,577,197 - 67,614,054 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000087045 ⟹ ENSSSCP00000060919

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	67,577,544 - 67,610,148 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000094873 ⟹ ENSSSCP00000079594

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	67,577,197 - 67,614,054 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000096542 ⟹ ENSSSCP00000078071

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	67,577,544 - 67,614,054 (-)	Ensembl

RefSeq Acc Id:

XM_005664093 ⟹ XP_005664150

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	67,574,149 - 67,617,513 (-)	NCBI

Sequence:

show sequence

GAGGCCAGGGATTGAATCCACATCCTCATGGATACTAGTTGGGTTTGTTACTGCTGAGCCATGA
CAGGAATTCGGTACCTTTTTATTTCTAACATTATGAATTAATCTGCCATTGCACAGCAACCATT
TGTTTACCAAGCAGAGATTTTCCTAATTTGTGGGGTGTCTGCGGTGATGGGGGAGGCCTTGAGG
TAGGGGAGATGCTGAGCAGACTATGAGGGAGAAGCAGATGGTGTCCTGAGTCCACAGGAAATCC
CCGATTTCCAAGGCATTTCTTTGCTCAGCTGTATTTTTCCAAAGTTGTATCTGCATCCTCTCTA
GTTTGCAGAGGGAAATTTTGTTTTAATCTGAAGAAGAACAAGGAAGTGATAACTAAGGTCTGGA
TGAAGGGAAGAAATAGCAGATAAAAAGTAGTGTTAGCATATTTTGATAGGATTATAGGAGAAGC
TGGAGTGAAATGTGAAAATTCTCGGCCTATCTTGAAGAAATCGAGGTATAAAATGCTCTTTTCC
CCCCTTCTTGGATGGTTACAAAAGGCAGGGGAGGCCCAGTCCCAAAGCAGCTGCAGGCTCTGGT
CCAAAGAGCAGACTATGGACAAGGCAGTAGGAGGGGCAGAGCTGAGTCATCAGCACAGCTTCTC
CTATAACCGTGAAAACCAGAGTGGAGGGGTCACAGGATGAAACCATCAGACCTGGGGCAATGGC
AGGTCCCAGAATGACTAGACAAGCCGGGAGACAGGCTTGTGGGCAGGTCAGGTAGATGCGGAAT
GAGTAGCCTGAGATCAGCTGTGGAAGGTTCAGAGCTGGGGGGGAAGCCAAGACGAGAAAAACAG
AGGCCCAGAGAAATGGAATGGATTGCACATCAGGCCAGACCCGGGCCTGGAATGTCAGCCTCCC
AGGTTTTCCGCCGTTTCCGTTGCCTGGAAGTTGGTTCTTGTTTTCCAGGTATGCCCTTTCTTTT
TGCCTCCCCACCCTGTCATGCGTCACCTTGCAGAACTCACTGCCCTGTCCCCAAAGTCACTTCT
TTGTGCTTCTGCCCATCAGTCAGCTGGTGAGTATGGAGAGCGCCTCAACCGCGGCATCTCGCTG
GGCGGAAACCGGGAGCTGAGTCAGCAACGCTGAACCGCCTTTGGAACAAACACCACACAGCGCA
TCCACGGGACACGGCGTGGAGGCATCGGGAGGACGTTTTGGATGCTCAGCCCGACCGGGATGTT
CAGCGCCTGGAGAGCGTCCAGGGGAGAGCGAAGGGCACGGCGGGTGGGGTAAGAGGAGACCAAA
GGATGCTGGTGACGTGGCGGAGAGGCAAGGCTCGTCATGCTGGACTTATGCTCCATCCCGGACC
GCGTCGCGAGGAACTGGCACAAACACTCCCTACCAGGGTTCTCAAACCTCTTTAAACCATAGCC
TGCCTAGGCAGGGCAGAAGACCTGCCCCACCTGCTCCTGCTTGACAGAGAAGCAGAAACAAGCG
CAATGAGAATTTGGAGAGGAATAAAGTAACCATCAACATGGTAACATGGCAGAAGTTAGGTGAA
AGCCATAGGATCAGCAAGAGAAACCAAACACTGCCTAATACCAGAGCAGCAACTCCGAAACCAC
TCAGATCAATCCTGAGGATCCTGGACCCTGGGATCCCAGCTGCTGGCCTGCATGGGCTTCCTGC
CTCCAGCTTCTCCGAAGACTTCGGTAAATCCCAGCCATCTCGTAATTTTGGATGACAAAGGCCG
GGTCATGAGTGAGAAGTAAGAATGGGACTTAATGGGCTCTTTTGCAGGAGTTCGAGGCCTCTCA
GAGGACACTCATGGTCTGTTGCTTTACACGCCTAACCCAGACTTTAGATGGTAGAGAGGCGGGG
TGGGACGGGAGGCAGCAGGACCATAAGAATTGCCGTCTCTGTGAATGTTTTCACGATGAGCTTC
CGGGCCCTTGCCCTCGCAGCAGTGGATGGAGAACGAGAGAAAAGGAAGCGTCTTTACCCTCCTT
CCCCCTCACTCGGTCATTTCTGGGCGTGTATCCGATCCCACTCAGTCATCCCTGTCACCTCCTG
ACTCAGTCTTTCTCTCTGGCAGGAGCCAGCTTGGCTGGGGGTCTCTCAGTGCCATCTCCTTCAG
GAAATGTCCCTGTTCCCCACGGATACTTTCTAAGGGTAAACAGGGGCTTGCTCTGTGTTAGGCC
TCTGCCATTCACTTCGCTCTCCTGAAACTTCCCACAGCCTTGCCAGGTAAGAAATACGCCCCTC
TTTCTGTAGAGGAGAAAATAGTTGAGGTCTCCTGGAAGCTGGACACCTTGCTCCTGTCCCGGCT
AGTGACAGGAGCAGGACCCAGCCCTCGGACCACCCAGCCTCAGAGCCACACCTGGTGGGGCTGG
GGCTCCCCGACTCCACTTCTGCTTCCCCTTCTCCACCAGCTCCTGTGCCCTGACAGGGGTAGGC
TCTGCTTTGGAAAAACTGTCACTTTACTTCACCTCCTGACCCCAACACTACTTCCAAATGTAAC
TACTGTTATCCATGTCGAGAATATTCCTTCAGACTCTTCTATGTGCACATAGGAGTGAGTGTGT
GTGCACACGTGTGTGTGTGTGTGAAGTTTTTCTGACTGTTCAGAGTTCTGTAATCTACATATCT
TTATTCTAAATCACTGACCGTTCCAAATCGTAGATTGCAAAGGAGCAAGATAAGTACACATTTA
AATCAGTATACACAGCACTTGCCCAAAGGAACACCCACTCTTGGTGATTTTTAGGGGCACTTGA
GTTGGAGAGAGAGGTGGAAGGCAGGATCCCTCTGTGGAGACCTGAGGTCGCCAAGGAAGAGAGT
GAACGGTGACCAGCTCACCAGCCCTGTGGGAGTGCATAGGATGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGGTGCCGAGGGAAGGGGAGCAGCGGGGGGTGGGGGGGGAGCTGGGAGGCAGGAGGCGG
AATGTGGGCTGGGCCAAGTTTAGAATTACAAGTGCCGCAGAGGAGTGGGAATCACACTTTAAAT
AGCCAGCACCTCCCCTTCCCCCTAGATATTCTCCCCTCTGACCAGACCTCTGGCAGTGACTGCA
CTAAGGTTGGTGACATTTTCTTCTCTTCTTTTCCTGCTTCCAGGTCTCAGACAGCAGGTGGAAT
GGATAGCAGGGTTTCAGGCACAACCAGTAATGGAGAGACAAGACCAGTGTACCCAGGCATGGAA
AAGGCGGAGGAGGATGGCACCCTGGAGCGGGGCCAGTGGACCAACAAGATGGAGTTCGTGCTGT
CCGTGGCCGGGGAGATCATTGGGCTGGGCAACGTCTGGAGGTTCCCCTACCTCTGCTACAAAAA
CGGGGGAGGTGCCTTCTTCATCCCCTACCTCATCTTCCTCTTCACCTGCGGCATCCCCGTCTTC
CTCTTGGAGACAGCGCTGGGCCAGTACACCAGCCAGGGGGGCATCACAGCCTGGCGGAAGATCT
GCCCCCTCTTTGAGGGCATCGGCTACGCCTCCCAGATGATCGTCGTCCTCCTCAACGTCTACTA
CATTGTCGTCCTGGCCTGGGCCCTCTTCTACCTCTTCAGCAGCTTCACTGTCGACCTGCCCTGG
GGGAGCTGCCGCCACCACTGGAACACAGAGCACTGCGTGGAGTTCCAGAGGACCAACGGCTCCC
TGAATGTGACCTCCGAGAACGCCACCTCTCCCGTCATCGAGTTCTGGGAGAGGCGCGTCCTGAA
GATCTCGGATGGCATCCAGCATCTGGGGGCCCTGCGCTGGGAGCTGGCCCTGTGTCTCCTGCTC
GCCTGGGTCATCTGCTACTTCTGCATCTGGAAGGGGGTCAAGTCCACGGGCAAGGTGGTATACT
TCACAGCCACGTTTCCTTACCTCATGCTGGTGGTCCTGTTAATTCGAGGGNTGACGCTGCCAGG
GGCAGCTCAAGGAATTCAGTTCTACCTGTACCCAAACCTCACGCGACTGTGGGACCCCCAGGTG
TGGATGGATGCTGGCACCCAGATCTTCTTCTCCTTCGCCATCTGCCTCGGGTGCCTGACGGCCC
TGGGCAGCTACAACAAGTACCACAACAACTGCTACAGGGACTGCATCGCCCTCTGCTTCCTCAA
TAGCGGCACCAGCTTCGTGGCCGGGTTTGCCATCTTCTCTATCCTGGGCTTCATGTCTCAGGAG
CAGGGGGTGCCCATCTCTGAGGTGGCCGAGTCAGGCCCCGGCCTGGCTTTCATCGCCTACCCCA
GGGCTGTGGTGATGCTGCCCTTCTCTCCACTCTGGGCCTGCTGCTTCTTCTTCATGGTCGTCCT
CCTGGGGTTGGACAGCCAGTTTGTGTGCGTGGAAAGCCTGGTGACAGCACTGGTGGACATGCAT
CCCCGTGTGTTGCGTAAGAAGAACCGGAGGGAGGTCCTCATCCTCGGAGTGTCTGTCACCTCCT
TCCTCGTGGGGCTGGTCATGCTCACAGAGGGCGGTATGTACGTGTTTCAGCTCTTTGACTACTA
TGCAGCCAGTGGCATGTGCCTGCTGTTCGTGGCCATCTTCGAGTCCCTCTGTGTGGCTTGGGCC
TATGGAGCAGGGCGCTTCTATGACAACATTGAACACATGATTGGGTACAGGCCATGGCCCCTCA
TCAAATACTGCTGGCTCTTCCTCACACCAGCCGTGTGCACAGCCACCTTCCTCTTCTCCCTGAT
CAAGTACACCCCGCTGACCTACAACAAGAAGTACATGTACCCGTGGTGGGGCGATGCCCTGGGC
TGGCTCCTGGCTCTCTCCTCCATGGTCTGCATTCCCACCTGGAGCTTCTACAAACTCAGCACCC
TCAAGGGCTCTCTCAGAGAGAGAGTTCGCCAGCTCATGTGCCCAGCTGAGGACCTGCCCCAGTG
GGACAGGGCAGGACCCTCTNGCCCCGCAACACCCAGGACATCACTTCTCATACTCACAGAAGTG
GAGTCTCACTGCTAGGGGGACAGGCCCTGGGACAGTCCAGTAAGCCTGGCTATGGGGACAGTTG
CAGAAGGAAAGGGCAGCAGCAGCCCCACTGTGTTTCTTTGTCCCACCGGGGTGGGCAAGACAAG
AGGGGACATTTGGAATCCTCCTCCTGAGCTGGGCTTCCACCCCAGGTCCTCTGCTGCAGGGGTG
GCTGGACCGGTGTGAAGGGCCAGTATTAAGGGGACTTGGGAGGCTGCGGGAGGGACAGGAGCTC
TTTTTGGCTTCACTTCATTCCATTAAATCCACCTTCTTCCCACCAGCTGCTAGCACTTCCGCCT
GGTTCCTGCCCCACCTCACTTGCTGCCTTGACCACCCCCTGATTTTTAAAGTGGGCCCTTAGGC
CTGCCCCCTCCCTCCCCCTTCCGGCACCCCTCCCCCCAGGTCCTCCATCACCAGACCCTCCGGC
AGATGGGCCGGCTCACCTCTATCCCCGCACCCGCCTCACCCCGCCCCAGTCCCTCCCCTCCTCC
TTCACTTTGTGGATAAGAAAGGCAATGGAGGTTGGGGGGGGGCGTGACAAGGAAGGAGGCCCCT
GAGCCCTTGCTGGAGGAGGGAGGAAACGATGGTGAGCTTCTTCCCGCCCGATTTCCCTTGCCGT
GTCCTTGTCTGACCCCAGCCGCCAAAACGGTGTGTGTGCGCGCCCAGGGCTTGGTGCTAGGGGC
GCGAGAGAGCGACAGCGGCGACCGCTGGCCCCAGGCGGCAGGTCCGCGAAGCTCTGGCAGAGCG
GGGCACTACCCGGCTCGGCCAGCAGAGGGAGCACCTTCTCCGGGACCATCACCGCGCAGCTCGG
CCAGCAGGATGGACTCTGACGCCGCCACGAGGGGTGGCACCGCGGCAACCTCCGCTGGGCTGCA
GGGCCTGGGCGCTTGGATCGCCTGACAGGAGACAGGTGGAAGGCAGAGCCTTTGCGCCCTCGGG
ACAATGGACGTGGCCTCGGCCCTGCAGCGCCTCTCTCCGGGAACGTGTGTGGAGGGGGGCGTGG
GGAATGCGGGCACACAGCGCATTTCTCCCCGACCCGTGGAGGTTCTCTGTTCAGATGGCTCTTC
TTCCAGGGCTGTTCCCGGGAGGGGGATTCTTAGAACTGCAGACCGAGCTGCACAGTATTCCCTG
GGTGATTTTCTTAGTTTACTTGTCAGGTAGTGGGAACGTGCACTGAAGGCTTTGCCTGAAGTCT
TTGGGTTTTGATTCTTTGTTGTTGGGAGAGTTTATAAAAATCAATGACAGCAGCCCTACTGTGT
GTCAGTCCTGGCGGCTCCTTCCTGGACAGTGACTGGCTGTGCACTCCCATCCCCCCCCTCCAGG
GTGCCAGGCTCAAGAGGGTCCTAAGATGGGAGAAATAAGTCTGCTGGAGAAACAGGCAGGAACT
GGAGGTACCACACCTGGCATCCCCACACGTCTGAGAGCATGTGCGGTGCACTTGCTTCCTGATG
CTGTGCTGTGCTCAGGACCCACAGGAGCAAAAACAGATGCATCTCTTGAAGGACAAATGCTATG
AGAGAAGAGCGCAGGCTCTGAGAAAAAACAAGTGGGTGTGGGAAGGATGATCTAGTTCAGGGGG
TCTGGGAAGGCTGTTCTGAGGGTGAGATATGTCTCTCTCACCATCTGACCGAAGTTGCGAGACC
CTGGGCGGCCAGGGAGGTGGGCCGGTCAGTTGTGGAGATTGACAGCTTTGTTAATGTCAGGACA
ATGTGAACCAGGATCAGGAGGTATGGGTTCTAGTCCTCACCTGCTGTGGACCTGCTGGTTTCTT
TGTGGAATTCGGGTCTTCATTTTCTGCAGAGATGATACTGTACACCCCACCTACACTTGGGTTT
GTGGACATATTTCAAGCAAATTCATCCTATTCTCCACGACCCTACTCCCCCCTGCCCCACACTG
GGCTGTCAGTGAAACAGAAAAGCCCAGAAAGAGCTTAGACACCTCTTGCTGCCTCTCTGGCTTT
CCCAGCCCCAGGCATCAGGCTGTATTGGACCCCAGAAAGAAGGCTACACATTTCTGACCTAAGC
ATTTTTCCTAGGAGGCAAGAGAGAGGAGCTAAAATATCCTGCATGCTCTGGCCCAAGGGTCCTG
CTCAGCACCAGCAGTTTTGTCCAAGAAAAGCAAGACCTGAGTCCTCCAAGCCCTGATCTTTCCC
CTGATTCTGGGAGAGCAATGCCCTCCCAGAAGAGGGAAGACCGGGATCATTTTTTCCCTCAAGC
TGCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCTTCCATCCAACCATCCA
TTCATCTATCTTTCCTTCCTTTCCTCCCCCCTTCCCTTCTTTCCTTCCTTCCTTCCTTCTTTCC
ATTCATCCTTCCATACATCCATTGGGTGCCTACTCTGAGCCAGCACTGTATTGAATGCTAGAGG
CAGAAACAAAGAACTATGAAATGTGACCCTTTAGATAGTCAGAGTCTGGAAACCAGTATGCTGC
AGTGGAATGAGTGTGGATTTTTGGAGCCGAGAGGCCCAGCCCAGCTTCAAATCCCAGCTCCCTC
ATTTACTAGTATATGGTCTTAGGACACATCATTAGCTTCTATTCATCCCAATTTTCTTATCTGT
AAAATGGGCTAATAATTCCTACATTTCAAGGTCTTGTGAGGACAAGCTGGGGTAACATGTAAAG
CACTTGCCTGAGTTAGATGCTCAGGAACTAGTGCCATGCCAGGCCCTCTAAAAGCAGGTGTGGG
TTAGAAGATGGCCGTGGTGAGGAGAACATTCAGTGGTTTTCACTGCAGCATGATAACAGATTCA
TTTAAGCATATTTCATCTTGACTCTGGACCCTTCCCAACATAGAAGCAGCCCAGCCCAGGTAGG
GTTTCCAGGTAACTTAGGGATTCCTACCTTTTGCAAAGACAGGGGTCTCCTGCCTCCAGGGGTT
TACCAATTGTTCTGAATGCCCAGTGGGTTGGGTGGGCTTGAGTAAGGGGGGGATGGGAGTTACA
GGGAAGCCAGGTCTAGCAGGGCAGCTCTGTCCTGTGAAGTGAAGAAGAGATGACACAGGTAATC
CCTTATTACAGAAAGTCCTGCAGAAAGCCTACACACTGTAGGCACGAAGTAACATTTTCAAAAG
AATGACTGAACCAGGAAACGCATCCTCTGCCCAGCCTGATTTTCTTCCCGCCCGCTCCCCCTCC
CACAGAGACTGGGCCTTTTGTCCTGGAGTAGCTGCAACCAGGTGGTCACGTTGACTTTGGTGTC
CCCTCGCAGCGGGCTGCGTGGTTGACACACGGTAGGCCCGGCGTGAAGGGTCAGGGCATGGCAG
CGAGCAGTCACCGCATCCCAGCTGAGTGCAGGGGAAACGCCTCTGCCTCTGCGGAGCTGCACCC
TCCCCGGCTCCGCCCACC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005664150	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000026627
	ENSSSCP00000026627.3
	ENSSSCP00000060919.1
	ENSSSCP00000063178.1
	ENSSSCP00000078071.1
	ENSSSCP00000079594.1
	ENSSSCP00035010143.1
	ENSSSCP00045010957.1

RefSeq Acc Id:

XP_005664150 ⟸ XM_005664093

- UniProtKB:

A0A8D0YZT0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWAGPSLELQVPQRSGNHTLNSQHLPFPLDILPSDQTSGSDCTKVGDIFFSSFPASRSQTAGGM
DSRVSGTTSNGETRPVYPGMEKAEEDGTLERGQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKN
GGGAFFIPYLIFLFTCGIPVFLLETALGQYTSQGGITAWRKICPLFEGIGYASQMIVVLLNVYY
IVVLAWALFYLFSSFTVDLPWGSCRHHWNTEHCVEFQRTNGSLNVTSENATSPVIEFWERRVLK
ISDGIQHLGALRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGXTLPG
AAQGIQFYLYPNLTRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCIALCFLN
SGTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVL
LGLDSQFVCVESLVTALVDMHPRVLRKKNRREVLILGVSVTSFLVGLVMLTEGGMYVFQLFDYY
AASGMCLLFVAIFESLCVAWAYGAGRFYDNIEHMIGYRPWPLIKYCWLFLTPAVCTATFLFSLI
KYTPLTYNKKYMYPWWGDALGWLLALSSMVCIPTWSFYKLSTLKGSLRERVRQLMCPAEDLPQW
DRAGPSXPATPRTSLLILTEVESHC

hide sequence

Ensembl Acc Id:

ENSSSCP00000026627 ⟸ ENSSSCT00000024761

Ensembl Acc Id:

ENSSSCP00000063178 ⟸ ENSSSCT00000076285

Ensembl Acc Id:

ENSSSCP00000060919 ⟸ ENSSSCT00000087045

Ensembl Acc Id:

ENSSSCP00000078071 ⟸ ENSSSCT00000096542

Ensembl Acc Id:

ENSSSCP00000079594 ⟸ ENSSSCT00000094873

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000030076	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00035020441	UniProtKB/TrEMBL
	ENSSSCG00045009283	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000024761	ENTREZGENE
	ENSSSCT00000024761.4	UniProtKB/TrEMBL
	ENSSSCT00000076285.2	UniProtKB/TrEMBL
	ENSSSCT00000087045.1	UniProtKB/TrEMBL
	ENSSSCT00000094873.1	UniProtKB/TrEMBL
	ENSSSCT00000096542.1	UniProtKB/TrEMBL
	ENSSSCT00035026595.1	UniProtKB/TrEMBL
	ENSSSCT00045015791.1	UniProtKB/TrEMBL
InterPro	Na/ntran_symport	UniProtKB/TrEMBL
	Na/ntran_symport_GABA_GAT2	UniProtKB/TrEMBL
	SNS_sf	UniProtKB/TrEMBL
KEGG Report	ssc:100513014	UniProtKB/TrEMBL
NCBI Gene	SLC6A13	ENTREZGENE
PANTHER	PTHR11616	UniProtKB/TrEMBL
	SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 2	UniProtKB/TrEMBL
Pfam	SNF	UniProtKB/TrEMBL
PRINTS	GAT2TRNSPORT	UniProtKB/TrEMBL
	NANEUSMPORT	UniProtKB/TrEMBL
PROSITE	NA_NEUROTRAN_SYMP_1	UniProtKB/TrEMBL
	NA_NEUROTRAN_SYMP_2	UniProtKB/TrEMBL
	NA_NEUROTRAN_SYMP_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF161070	UniProtKB/TrEMBL
UniProt	A0A5G2Q9E7_PIG	UniProtKB/TrEMBL
	A0A5G2QG07_PIG	UniProtKB/TrEMBL
	A0A8D0YZT0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FGR8_PIG	UniProtKB/TrEMBL
	A0A8W4FJT9_PIG	UniProtKB/TrEMBL
	I3LR93_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:93156	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar