Ctrl (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 19 | 50,737,078 - 50,740,659 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 19 | 33,827,279 - 33,829,129 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 19 | 33,827,229 - 33,833,626 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 19 | 40,642,815 - 40,644,665 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 19 | 41,296,130 - 41,297,980 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 19 | 43,594,680 - 43,596,530 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 19 | 37,905,864 - 37,907,714 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 19 | 37,905,864 - 37,907,714 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 19 | 48,772,599 - 48,775,409 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 19 | 35,774,031 - 35,775,881 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 19 | 35,778,911 - 35,780,759 (-) | NCBI | | | | | Celera | 19 | 33,254,828 - 33,256,678 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | q12 | NCBI | | | | |
|
CTRL (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 16 | 67,929,574 - 67,931,862 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 16 | 67,927,640 - 67,932,365 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 16 | 67,963,477 - 67,965,765 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 16 | 66,520,974 - 66,523,266 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 16 | 66,520,974 - 66,523,266 | NCBI | | | | | Celera | 16 | 52,471,930 - 52,474,222 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | q22.1 | NCBI | | | | | HuRef | 16 | 53,837,043 - 53,839,348 (-) | NCBI | | HuRef | | | CHM1_1 | 16 | 69,371,652 - 69,373,957 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 16 | 73,725,348 - 73,727,636 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
Ctrl (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 8 | 106,658,626 - 106,660,494 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 106,658,635 - 106,660,494 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 105,931,994 - 105,933,862 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 105,932,003 - 105,933,862 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 8 | 108,455,894 - 108,457,762 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 108,820,789 - 108,822,991 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 110,160,042 - 110,161,910 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | D3 | NCBI | | | | | cM Map | 8 | 53.06 | NCBI | | | | |
|
Ctrl (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955484 | 8,781,928 - 8,783,929 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955484 | 8,781,928 - 8,783,929 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
CTRL (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 18 | 77,456,564 - 77,460,908 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 16 | 83,367,990 - 83,370,113 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 16 | 48,270,961 - 48,274,248 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 16 | 67,658,148 - 67,661,410 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 16 | 67,658,451 - 67,660,582 (-) | Ensembl | panpan1.1 | | panPan2 | |
|
CTRL (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 5 | 81,565,155 - 81,567,472 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 5 | 81,565,418 - 81,567,472 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 5 | 81,554,912 - 81,557,457 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 5 | 82,000,253 - 82,002,798 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 5 | 82,000,740 - 82,003,005 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 5 | 81,826,462 - 81,829,007 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 5 | 81,508,592 - 81,511,137 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 5 | 82,150,811 - 82,153,356 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Ctrl (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024409349 | 41,299,179 - 41,302,980 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936475 | 18,286,133 - 18,288,091 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936475 | 18,284,495 - 18,288,938 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
CTRL (Sus scrofa - pig) |
|
CTRL (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 5 | 59,508,058 - 59,510,392 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 5 | 59,508,380 - 59,510,330 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666047 | 22,234,344 - 22,235,738 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Ctrl (Heterocephalus glaber - naked mole-rat) |
|