Ctrl (chymotrypsin-like) - Rat Genome Database

Name: Ctrl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ctrl (chymotrypsin-like) Mus musculus

Analyze

Symbol:

Ctrl

Name:

chymotrypsin-like

RGD ID:

733172

MGI Page

MGI

Description:

Enables peptidase activity. Acts upstream of or within proteolysis. Predicted to be located in extracellular space. Is expressed in brain; embryo; pancreas; and pancreas tip epithelium. Orthologous to human CTRL (chymotrypsin like).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

0910001G08Rik; 1810004D15Rik; AV005227; chym; chymopasin; chymotrypsin A CTRA-1; chymotrypsin-like protease CTRL-1; Ctr; Ctra; Ctra-1; Ctra1; FLJ00366; mFLJ00366

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTRL (chymotrypsin like)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Ctrl (chymotrypsin-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctrl (chymotrypsin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTRL (chymotrypsin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTRL (chymotrypsin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctrl (chymotrypsin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTRL (chymotrypsin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTRL (chymotrypsin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctrl (chymotrypsin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CTRB1 (chymotrypsinogen B1)	HGNC	OrthoDB
Homo sapiens (human):	CTRB2 (chymotrypsinogen B2)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ctrl (chymotrypsin-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CTRL (chymotrypsin like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ctrl (chymotrypsin-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	zgc:171592	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-238d18.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Jon74E	Alliance	DIOPT (Hieranoid\|InParanoid)
Drosophila melanogaster (fruit fly):	CG6592	Alliance	DIOPT (Hieranoid\|InParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,658,626 - 106,660,494 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,658,635 - 106,660,494 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	105,931,994 - 105,933,862 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,932,003 - 105,933,862 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	108,455,894 - 108,457,762 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,820,789 - 108,822,991 (-)	NCBI		MGSCv36	mm8
Celera	8	110,160,042 - 110,161,910 (-)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.06	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 6 (ISO)

genetic disease (ISO)

long QT syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (EXP)

acrylamide (ISO)

all-trans-retinoic acid (EXP)

ammonium chloride (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

carbon nanotube (EXP)

carnosic acid (EXP)

chlorohydrocarbon (ISO)

chloroquine (ISO)

chlorpyrifos (EXP)

ciguatoxin CTX1B (EXP)

clozapine (ISO)

cocaine (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (ISO)

dexamethasone (EXP)

folic acid (EXP)

genistein (ISO)

gentamycin (ISO)

haloperidol (ISO)

lead diacetate (EXP)

methamphetamine (ISO)

methotrexate (ISO)

methoxychlor (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (EXP)

monosodium L-glutamate (EXP)

N-acetyl-L-cysteine (ISO)

N-ethyl-N-nitrosourea (EXP)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

phenobarbital (EXP)

pirinixic acid (EXP)

plumbagin (ISO)

quercetin (ISO)

SCH-351591 (ISO)

senecionine (EXP)

silicon dioxide (ISO)

sodium dichromate (ISO)

Soman (ISO)

sunitinib (ISO)

T-2 toxin (ISO)

tamoxifen (ISO)

Tesaglitazar (ISO)

theophylline (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

trichloroethene (ISO)

triptonide (EXP)

troglitazone (ISO)

uranium atom (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

proteolysis (IBA,IDA)

Cellular Component

extracellular space (ISO)

Molecular Function

peptidase activity (IDA)

protein binding (ISO)

serine-type endopeptidase activity (IBA)

serine-type peptidase activity (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal pancreas physiology (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:1820020	PMID:8889548	PMID:9069116	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11961105	PMID:12477932	PMID:12732630	PMID:15537664	PMID:16141072	PMID:16141073
PMID:18554416	PMID:19592578	PMID:20152175	PMID:21267068	PMID:21780244	PMID:21873635	PMID:25063451	PMID:32678161

Genomics

Comparative Map Data

Ctrl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,658,626 - 106,660,494 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,658,635 - 106,660,494 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	105,931,994 - 105,933,862 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,932,003 - 105,933,862 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	108,455,894 - 108,457,762 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,820,789 - 108,822,991 (-)	NCBI		MGSCv36	mm8
Celera	8	110,160,042 - 110,161,910 (-)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.06	NCBI

CTRL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,929,574 - 67,931,862 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	67,927,640 - 67,932,365 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	67,963,477 - 67,965,765 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	66,520,974 - 66,523,266 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	66,520,974 - 66,523,266	NCBI
Celera	16	52,471,930 - 52,474,222 (-)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,837,043 - 53,839,348 (-)	NCBI		HuRef
CHM1_1	16	69,371,652 - 69,373,957 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	73,725,348 - 73,727,636 (-)	NCBI		T2T-CHM13v2.0

Ctrl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,737,078 - 50,740,659 (-)	NCBI		GRCr8
mRatBN7.2	19	33,827,279 - 33,829,129 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,827,229 - 33,833,626 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	40,642,815 - 40,644,665 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	41,296,130 - 41,297,980 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,594,680 - 43,596,530 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,905,864 - 37,907,714 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,905,864 - 37,907,714 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	48,772,599 - 48,775,409 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,774,031 - 35,775,881 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	35,778,911 - 35,780,759 (-)	NCBI
Celera	19	33,254,828 - 33,256,678 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Ctrl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	8,781,928 - 8,783,929 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	8,781,928 - 8,783,929 (+)	NCBI	ChiLan1.0	ChiLan1.0

CTRL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	77,456,564 - 77,460,908 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	83,367,990 - 83,370,113 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	48,270,961 - 48,274,248 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	67,658,148 - 67,661,410 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,658,451 - 67,660,582 (-)	Ensembl	panpan1.1		panPan2

CTRL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,565,155 - 81,567,472 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,565,418 - 81,567,472 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,554,912 - 81,557,457 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,000,253 - 82,002,798 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,000,740 - 82,003,005 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	81,826,462 - 81,829,007 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	81,508,592 - 81,511,137 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,150,811 - 82,153,356 (+)	NCBI		UU_Cfam_GSD_1.0

Ctrl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,299,179 - 41,302,980 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	18,286,133 - 18,288,091 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	18,284,495 - 18,288,938 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTRL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,540,808 - 28,542,773 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	28,540,187 - 28,542,820 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CTRL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,508,058 - 59,510,392 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	59,508,380 - 59,510,330 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	22,234,344 - 22,235,738 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctrl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	18,447,574 - 18,449,964 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	18,447,042 - 18,449,888 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctrl
55 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	121
Interacting mature miRNAs:	129
Transcripts:	ENSMUST00000034368
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73929123	107929226	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	79245241	113245331	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
27226796	Scvln16_m	sacral vertebrae length 2, 16 week (mouse)					8	89726628	130027694	Mouse
1357494	Obsty2_m	obesity 2 (mouse)			Not determined		8	96245241	129745061	Mouse
12880431	Fgf23lq2_m	FGF23 serum level QTL 2 (mouse)					8	97626632	130127694	Mouse
11252141	Fdr2_m	fat response to dietary restriction 2 (mouse)					8	98390634	130127694	Mouse
1301481	Lith11_m	lithogenic gene 11 (mouse)			Not determined		8	98563635	130127694	Mouse
1302105	Im1_m	Immunoregulatory 1 (mouse)			Not determined		8	99828531	130127694	Mouse
1301080	Sluc9_m	susceptibility to lung cancer 9 (mouse)			Not determined		8	99828531	130127694	Mouse
4141435	Fbtq3_m	femoral bone trait QTL 3 (mouse)			Not determined		8	100965309	130127694	Mouse
1300560	Tgl1_m	triglyceride level 1 (mouse)			Not determined		8	102486208	111650036	Mouse
1300681	Pgia22_m	proteoglycan induced arthritis 22 (mouse)			Not determined		8	102486208	116025457	Mouse
1301316	Dntcs1_m	dental caries susceptibility 1 (mouse)			Not determined		8	103443553	127781786	Mouse
11532691	Sluc38_m	susceptibility to lung cancer 38 (mouse)					8	105033977	130127694	Mouse
11532692	Sluc38a_m	susceptibility to lung cancer 38a (mouse)					8	105033977	130127694	Mouse
14746994	Manh65_m	mandible shape 65 (mouse)					8	106489629	130127694	Mouse

Markers in Region

AV005227

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	105,932,129 - 105,932,343	UniSTS	GRCm38
MGSCv37	8	108,456,029 - 108,456,243	UniSTS	GRCm37
Celera	8	110,160,177 - 110,160,391	UniSTS
Cytogenetic Map	8	D3	UniSTS
cM Map	8	53.0	UniSTS
Whitehead/MRC_RH	8	1234.06	UniSTS

Ctrl

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	105,932,585 - 105,932,658	UniSTS	GRCm38
MGSCv37	8	108,456,485 - 108,456,558	UniSTS	GRCm37
Celera	8	110,160,633 - 110,160,706	UniSTS
Cytogenetic Map	8	D3	UniSTS
cM Map	8	53.06	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_023182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB016228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC159265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF274232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH011134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK220246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF582693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000034368 ⟹ ENSMUSP00000034368

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	106,658,635 - 106,660,494 (-)	Ensembl
GRCm38.p6 Ensembl	8	105,932,003 - 105,933,862 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212561

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	106,659,206 - 106,660,087 (-)	Ensembl
GRCm38.p6 Ensembl	8	105,932,574 - 105,933,455 (-)	Ensembl

RefSeq Acc Id:

NM_023182 ⟹ NP_075671

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	106,658,626 - 106,660,494 (-)	NCBI
GRCm38	8	105,931,994 - 105,933,862 (-)	ENTREZGENE
MGSCv37	8	108,455,894 - 108,457,762 (-)	RGD
Celera	8	110,160,042 - 110,161,910 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GACCATCTCAACACCATTCCTTATTTGTCACAATGCTACTGCTCAGCCTAACCCTTAGCCTGGT
CCTCCTTGGCTCCTCCTGGGGCTGTGGTGTTCCTGCCATCACGCCTGCACTGAGCTACAATCAG
AGAATTGTCAACGGGGAGAATGCAGTGCCAGGCTCCTGGCCCTGGCAGGTGTCTCTCCAGGATA
ACACCGGCTTCCACTTCTGCGGTGGTTCTCTCATCAGTCCGAACTGGGTGGTCACGGCTGCCCA
CTGCCAAGTCACGCCTGGACGCCACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAATGCT
GAACCTGTGCAGGTCCTCTCGATCGCAAGGGCCATCACACACCCTAACTGGAACGCCAACACCA
TGAACAATGACCTGACTCTCCTGAAGCTTGCCTCGCCAGCCCGGTACACAGCACAAGTCTCACC
AGTCTGCCTGGCTTCCACAAACGAGGCACTGCCTTCGGGGCTCACCTGTGTCACCACTGGCTGG
GGCCGAATCAGTGGTGTGGGCAATGTGACACCAGCTCGCCTGCAGCAAGTTGTTCTACCCCTGG
TCACTGTGAATCAGTGTCGGCAGTACTGGGGTGCACGCATTACCGATGCCATGATATGTGCAGG
TGGCTCAGGCGCCTCCTCATGTCAGGGTGACTCAGGAGGCCCTCTTGTCTGCCAGAAGGGAAAC
ACCTGGGTGCTTATTGGGATTGTCTCCTGGGGCACTAAGAACTGCAACATACAAGCACCGGCCA
TGTACACTCGGGTCAGCAAGTTCAGTACCTGGATCAACCAAGTCATGGCCTACAACTAAACTGT
CCACAGATCCGTTCCCCATCTCAATCTAATAAACATACTCGTCTCAGTTTCTCTTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_075671	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87918	(Get FASTA)	NCBI Sequence Viewer
	AAL11034	(Get FASTA)	NCBI Sequence Viewer
	BAB20275	(Get FASTA)	NCBI Sequence Viewer
	BAB22549	(Get FASTA)	NCBI Sequence Viewer
	BAB24967	(Get FASTA)	NCBI Sequence Viewer
	BAB26029	(Get FASTA)	NCBI Sequence Viewer
	BAD90171	(Get FASTA)	NCBI Sequence Viewer
	EDL11330	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000034368
	ENSMUSP00000034368.7

RefSeq Acc Id:	NP_075671 ⟸ NM_023182
- Peptide Label:	precursor
- UniProtKB:	Q9ER05 (UniProtKB/TrEMBL), Q9D7P8 (UniProtKB/TrEMBL), Q9D960 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLLSLTLSLVLLGSSWGCGVPAITPALSYNQRIVNGENAVPGSWPWQVSLQDNTGFHFCGGSL ISPNWVVTAAHCQVTPGRHFVVLGEYDRSSNAEPVQVLSIARAITHPNWNANTMNNDLTLLKLA SPARYTAQVSPVCLASTNEALPSGLTCVTTGWGRISGVGNVTPARLQQVVLPLVTVNQCRQYWG ARITDAMICAGGSGASSCQGDSGGPLVCQKGNTWVLIGIVSWGTKNCNIQAPAMYTRVSKFSTW INQVMAYN hide sequence

RefSeq Acc Id:

ENSMUSP00000034368 ⟸ ENSMUST00000034368

Protein Domains

Peptidase S1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ER05-F1-model_v2	AlphaFold	Q9ER05	1-264	view protein structure

Promoters

RGD ID:

8668139

Promoter ID:

EPDNEW_M12101

Type:

multiple initiation site

Name:

Ctrl_1

Description:

Mus musculus chymotrypsin-like , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	105,933,847 - 105,933,907	EPDNEW

RGD ID:

6842991

Promoter ID:

MM_KWN:55582

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, Kidney, Liver

Transcripts:

NM_023182, OTTMUST00000076849

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	108,456,856 - 108,458,142 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:88558	AgrOrtholog
Ensembl Genes	ENSMUSG00000031896	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000034368	ENTREZGENE
	ENSMUST00000034368.8	UniProtKB/TrEMBL
Gene3D-CATH	2.40.10.10	UniProtKB/TrEMBL
InterPro	Pept_cys/ser_Trypsin-like	UniProtKB/TrEMBL
	Peptidase_S1/S6_AS	UniProtKB/TrEMBL
	Peptidase_S1_PA_chymotrypsin	UniProtKB/TrEMBL
	Peptidase_S1_S6	UniProtKB/TrEMBL
	Peptidase_S1A	UniProtKB/TrEMBL
	TRYPSIN_SER	UniProtKB/TrEMBL
KEGG Report	mmu:109660	UniProtKB/TrEMBL
MGD	MGI:88558	ENTREZGENE
NCBI Gene	109660	ENTREZGENE
PANTHER	CHYMOTRYPSIN-LIKE PROTEASE CTRL-1	UniProtKB/TrEMBL
	CHYMOTRYPSIN-RELATED	UniProtKB/TrEMBL
Pfam	Trypsin	UniProtKB/TrEMBL
PhenoGen	Ctrl	PhenoGen
PRINTS	CHYMOTRYPSIN	UniProtKB/TrEMBL
PROSITE	TRYPSIN_DOM	UniProtKB/TrEMBL
	TRYPSIN_HIS	UniProtKB/TrEMBL
	TRYPSIN_SER	UniProtKB/TrEMBL
SMART	Tryp_SPc	UniProtKB/TrEMBL
Superfamily-SCOP	Pept_Ser_Cys	UniProtKB/TrEMBL
UniProt	Q9D7P8	ENTREZGENE, UniProtKB/TrEMBL
	Q9D960	ENTREZGENE, UniProtKB/TrEMBL
	Q9DC82_MOUSE	UniProtKB/TrEMBL
	Q9ER05	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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