Rpl15 (ribosomal protein L15) - Rat Genome Database

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Gene: Rpl15 (ribosomal protein L15) Rattus norvegicus
Analyze
Symbol: Rpl15 (Ensembl: Rpl15l1)
Name: ribosomal protein L15 (Ensembl:ribosomal protein L15 like 1)
RGD ID: 621181
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in response to ethanol. Located in A band. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 12. Orthologous to human RPL15 (ribosomal protein L15); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L15; large ribosomal subunit protein eL15; Rpl10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8159,934,663 - 9,937,946 (+)NCBIGRCr8
mRatBN7.2157,503,883 - 7,507,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,227,171 - 10,228,000 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl157,503,883 - 7,507,165 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx159,649,553 - 9,652,826 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01510,562,350 - 10,565,623 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0158,862,768 - 8,866,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0158,188,717 - 8,192,153 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl158,189,253 - 8,192,152 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01512,250,776 - 12,254,212 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4159,082,190 - 9,085,473 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera157,557,178 - 7,560,461 (+)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl15RatDiamond-Blackfan anemia 12  ISORPL15 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:23812780 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl15RatDisease Progression  ISORPL15 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21364753
Rpl15RatStomach Neoplasms  ISORPL15 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21364753
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl15RatDiamond-Blackfan anemia 12  ISORPL15 (Homo sapiens)7240710 OMIM 

1 to 20 of 108 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl15Rat(-)-epigallocatechin 3-gallate increases expressionISORPL15 (Homo sapiens)6480464epigallocatechin gallate results in increased expression of RPL15 proteinCTDPMID:31195006
Rpl15Rat(1->4)-beta-D-glucan multiple interactionsISORpl15 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RPL15 mRNACTDPMID:36331819
Rpl15Rat1,2-dimethylhydrazine multiple interactionsISORpl15 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RPL15 mRNACTDPMID:22206623
Rpl15Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of RPL15 mRNACTDPMID:17557909
Rpl15Rat17beta-estradiol decreases expressionISORpl15 (Mus musculus)6480464Estradiol results in decreased expression of RPL15 mRNACTDPMID:39298647
Rpl15Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISORpl15 (Mus musculus)64804642 more ...CTDPMID:30294300
Rpl15Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORpl15 (Mus musculus)6480464[Tetrachlorodibenzodioxin binds to AHR protein] which results in increased expression of RPL15 mRNACTDPMID:16214954
Rpl15Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RPL15 mRNACTDPMID:33387578
Rpl15Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of RPL15 mRNACTDPMID:32109520 and PMID:34747641
Rpl15Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of RPL15 mRNACTDPMID:21346803
Rpl15Rat2,6-dimethoxyphenol multiple interactionsISORPL15 (Homo sapiens)6480464[pyrogallol 1 more ...CTDPMID:38598786
Rpl15Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of RPL15 mRNACTDPMID:21346803
Rpl15Rat2-nitrofluorene increases expressionEXP 64804642-nitrofluorene results in increased expression of RPL15 mRNACTDPMID:15890375
Rpl15Rat4,4'-sulfonyldiphenol increases expressionISORpl15 (Mus musculus)6480464bisphenol S results in increased expression of RPL15 mRNACTDPMID:39298647
Rpl15Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of RPL15 mRNACTDPMID:36041667
Rpl15Rat4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one increases expressionEXP 64804644-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone results in increased expression of RPL15 mRNACTDPMID:15890375
Rpl15Rat4-hydroxyphenyl retinamide decreases expressionISORpl15 (Mus musculus)6480464Fenretinide results in decreased expression of RPL15 mRNACTDPMID:28973697
Rpl15Rat5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole affects expressionEXP 6480464Omeprazole affects the expression of RPL15 mRNACTDPMID:19483382
Rpl15Rat6-propyl-2-thiouracil affects expressionEXP 6480464Propylthiouracil affects the expression of RPL15 mRNACTDPMID:19483382
Rpl15Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of RPL15 mRNACTDPMID:24780913 and PMID:36843608

1 to 20 of 108 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl15Ratcytoplasmic translation involved_inIBAPANTHER:PTN000217960 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl15Ratresponse to ethanol  IEP 10769365 RGD 
Rpl15Rattranslation involved_inIEAInterPro:IPR000439 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Rpl15Rattranslation involved_inIEAInterPro:IPR000439 and InterPro:IPR0126781600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl15RatA band  IDA 11036104 RGD 
Rpl15Ratcytoplasm located_inISORpl15 (Mus musculus)1624291 PMID:36517592RGDPMID:36517592
Rpl15Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Rpl15Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Rpl15Ratcytosolic large ribosomal subunit  IDA 11036088 RGD 
Rpl15Ratcytosolic large ribosomal subunit part_ofISORpl15 (Mus musculus)1624291 PMID:36517592RGDPMID:36517592
Rpl15Ratcytosolic large ribosomal subunit part_ofIBAMGI:1913730 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rpl15Ratcytosolic large ribosomal subunit part_ofISORPL15 (Homo sapiens)1624291 PMID:25901680 and PMID:32669547RGDPMID:25901680 and PMID:32669547
Rpl15Ratcytosolic ribosome part_ofISORPL15 (Homo sapiens)1624291 PMID:23636399RGDPMID:23636399
Rpl15Ratcytosolic ribosome located_inIEAARBA:ARBA000265771600115GO_REF:0000117UniProtGO_REF:0000117
Rpl15Ratnucleus located_inISORPL15 (Homo sapiens)1624291 PMID:25468996RGDPMID:25468996
Rpl15Ratribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-06871600115GO_REF:0000043UniProtGO_REF:0000043
Rpl15Ratribosomal subunit part_ofIEAARBA:ARBA000277341600115GO_REF:0000117UniProtGO_REF:0000117
Rpl15Ratribosome located_inIEAInterPro:IPR000439 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Rpl15Ratribosome located_inIEAUniProtKB-KW:KW-06891600115GO_REF:0000043UniProtGO_REF:0000043
Rpl15Ratribosome located_inIEAInterPro:IPR000439 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Rpl15Ratsynapse is_active_inISORpl15 (Mus musculus)1624291 PMID:25211037RGDPMID:25211037
1 to 17 of 17 rows

Molecular Function

  

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl15Ratribosome biogenesis pathway   ISORPL15 (Homo sapiens)10002762 RGD 
Rpl15Ratribosome biogenesis pathway   ISORPL15 (Homo sapiens)9999448 RGD 
Rpl15Rattranslation pathway   ISORPL15 (Homo sapiens)10002762 RGD 

1 to 14 of 14 rows
#
Reference Title
Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L15. Chang YL, etal., Biochem Biophys Res Commun 1994 May 30;201(1):108-14.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Effect of ethanol on hepatic ribosomal proteins and mRNA. Haviryaji KS, etal., Mol Cell Biochem. 1992 Oct 7;115(2):143-7.
5. An overview of pre-ribosomal RNA processing in eukaryotes. Henras AK, etal., Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):225-42. doi: 10.1002/wrna.1269. Epub 2014 Oct 27.
6. Immunological localization of ribosomes in striated rat muscle. Evidence for myofibrillar association and ontological changes in the subsarcolemmal:myofibrillar distribution. Horne Z and Hesketh J, Biochem J. 1990 May 15;268(1):231-6.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
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PMID:7667285   PMID:12962325   PMID:15489334   PMID:21630459   PMID:22658674   PMID:22681889   PMID:23376485   PMID:25468996   PMID:30053369  



Rpl15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8159,934,663 - 9,937,946 (+)NCBIGRCr8
mRatBN7.2157,503,883 - 7,507,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,227,171 - 10,228,000 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl157,503,883 - 7,507,165 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx159,649,553 - 9,652,826 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01510,562,350 - 10,565,623 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0158,862,768 - 8,866,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0158,188,717 - 8,192,153 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl158,189,253 - 8,192,152 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01512,250,776 - 12,254,212 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4159,082,190 - 9,085,473 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera157,557,178 - 7,560,461 (+)NCBICelera
Cytogenetic Map15p16NCBI
RPL15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38323,916,545 - 23,924,631 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl323,916,591 - 23,924,374 (+)EnsemblGRCh38hg38GRCh38
GRCh37323,958,036 - 23,966,122 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36323,933,643 - 23,937,338 (+)NCBINCBI36Build 36hg18NCBI36
Build 34323,933,642 - 23,937,334NCBI
Celera323,894,829 - 23,898,524 (+)NCBICelera
Cytogenetic Map3p24.2NCBI
HuRef323,904,389 - 23,911,124 (+)NCBIHuRef
CHM1_1323,910,110 - 23,917,002 (+)NCBICHM1_1
T2T-CHM13v2.0323,921,321 - 23,929,407 (+)NCBIT2T-CHM13v2.0
Rpl15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,198,710 - 4,201,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl144,198,305 - 4,201,873 (+)EnsemblGRCm39 Ensembl
GRCm381418,267,823 - 18,270,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1418,267,823 - 18,271,391 (-)EnsemblGRCm38mm10GRCm38
MGSCv371419,100,337 - 19,103,500 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,935,943 - 21,959,487 (-)NCBIMGSCv36mm8
Celera1413,960,053 - 13,963,216 (-)NCBICelera
Cytogenetic Map14A1NCBI
cM Map147.08NCBI
Rpl15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543015,766,465 - 15,769,239 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543015,766,465 - 15,769,239 (+)NCBIChiLan1.0ChiLan1.0
RPL15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2223,877,684 - 23,880,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1323,882,529 - 23,885,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0323,829,041 - 23,832,838 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1324,152,223 - 24,156,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl324,152,479 - 24,157,337 (+)Ensemblpanpan1.1panPan2
RPL15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12319,825,622 - 19,829,807 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2319,825,622 - 19,829,807 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2319,823,714 - 19,827,899 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02320,138,613 - 20,142,803 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2320,138,623 - 20,142,770 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12319,947,937 - 19,952,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02320,057,167 - 20,061,348 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02320,166,279 - 20,170,467 (-)NCBIUU_Cfam_GSD_1.0
Rpl15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118182,433,258 - 182,437,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647315,571,912 - 15,576,462 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647315,571,897 - 15,575,812 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1310,716,002 - 10,719,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11310,716,373 - 10,719,959 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21312,164,825 - 12,167,957 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11568,596,897 - 68,599,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1568,596,968 - 68,599,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604141,720,551 - 41,723,247 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247881,639,620 - 1,644,482 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247881,639,138 - 1,642,048 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rpl15
15 total Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
15 9082838 9082839 C G snv GH/OmrMcwi (MCW) View more Information

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:24
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000010759
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 12 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat

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alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 26 of 26 rows
RefSeq Transcripts NM_139114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA687059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X78167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 26 of 26 rows

Ensembl Acc Id: ENSRNOT00000010759   ⟹   ENSRNOP00000010759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl157,503,883 - 7,507,165 (+)Ensembl
Rnor_6.0 Ensembl158,189,253 - 8,192,152 (+)Ensembl
RefSeq Acc Id: NM_139114   ⟹   NP_620814
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8159,934,663 - 9,937,946 (+)NCBI
mRatBN7.2157,503,883 - 7,507,166 (+)NCBI
Rnor_6.0158,188,717 - 8,192,153 (+)NCBI
Rnor_5.01512,250,776 - 12,254,212 (+)NCBI
RGSC_v3.4159,082,190 - 9,085,473 (+)RGD
Celera157,557,178 - 7,560,461 (+)RGD
Sequence:
Protein RefSeqs NP_620814 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78724 (Get FASTA)   NCBI Sequence Viewer  
  CAA55026 (Get FASTA)   NCBI Sequence Viewer  
  EDL94083 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010759
  ENSRNOP00000010759.3
GenBank Protein P61314 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620814   ⟸   NM_139114
- UniProtKB: P61314 (UniProtKB/Swiss-Prot),   A6K036 (UniProtKB/TrEMBL),   A0A8I6A471 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010759   ⟸   ENSRNOT00000010759

Name Modeler Protein Id AA Range Protein Structure
AF-P61314-F1-model_v2 AlphaFold P61314 1-204 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-14459 BioCyc
Ensembl Genes ENSRNOG00000008140 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000025212 Ensembl
Ensembl Transcript ENSRNOT00000010759 ENTREZGENE
  ENSRNOT00000010759.7 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.1120.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7125608 IMAGE-MGC_LOAD
InterPro Rbsml_L15e_core_dom_sf UniProtKB/Swiss-Prot
  Ribosomal_L15e UniProtKB/Swiss-Prot
  Ribosomal_L15e_CS UniProtKB/Swiss-Prot
  Ribosomal_L23/L15e_core_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:245981 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93161 IMAGE-MGC_LOAD
NCBI Gene 245981 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L15 UniProtKB/Swiss-Prot
  PTHR11847 UniProtKB/Swiss-Prot
Pfam Ribosomal_L15e UniProtKB/Swiss-Prot
PhenoGen Rpl15 PhenoGen
PROSITE RIBOSOMAL_L15E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008140 RatGTEx
  ENSRNOG00000025212 RatGTEx
SMART Ribosomal_L15e UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54189 UniProtKB/Swiss-Prot
UniProt A0A8I6A471 ENTREZGENE, UniProtKB/TrEMBL
  A6K036 ENTREZGENE, UniProtKB/TrEMBL
  P61314 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P39030 UniProtKB/Swiss-Prot
  P41051 UniProtKB/Swiss-Prot
  Q96C44 UniProtKB/Swiss-Prot
  Q9H2E5 UniProtKB/Swiss-Prot
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl15  ribosomal protein L15      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl15  ribosomal protein L15      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_domains contains the hexapeptide TYKFFE, that is also present in the amyloidogenic glycoprotein A4 633840
gene_other gene may be present in 13-15 copies 633840