LOC120096089 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120096089 (U4 spliceosomal RNA) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120096089
Name: U4 spliceosomal RNA
RGD ID: 40932154
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U4
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,351,003 - 15,351,088 (+)NCBIGRCr8
mRatBN7.21210,237,326 - 10,237,440 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1210,237,326 - 10,237,440 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1210,237,326 - 10,237,440 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1212,213,863 - 12,213,977 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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1 to 10 of 34 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat

1 to 10 of 34 rows





GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1210,237,326 - 10,237,440 (+)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-20039 BioCyc
Ensembl Genes ENSRNOG00000060796 Ensembl
NCBI Gene LOC120096089 ENTREZGENE
PhenoGen LOC120096089 PhenoGen
RatGTEx ENSRNOG00000060796 RatGTEx
RNAcentral URS00006FF234 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120096089  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:15013595 737654 PROVISIONAL
2021-01-26 LOC120096089  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL