LOC134480482 (uncharacterized LOC134480482) - Rat Genome Database

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Gene: LOC134480482 (uncharacterized LOC134480482) Rattus norvegicus
Analyze
Symbol: LOC134480482
Name: uncharacterized LOC134480482
RGD ID: 402340042
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC134480482
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8911,548,404 - 11,570,206 (-)NCBIGRCr8
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9360535521031556Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_063267974   ⟹   XP_063124044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8911,548,404 - 11,557,078 (-)NCBI
RefSeq Acc Id: XM_063267975   ⟹   XP_063124045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8911,548,404 - 11,557,078 (-)NCBI
RefSeq Acc Id: XM_063267976   ⟹   XP_063124046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8911,548,404 - 11,570,206 (-)NCBI
RefSeq Acc Id: XM_063267977   ⟹   XP_063124047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8911,548,404 - 11,565,183 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063124044 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124045 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124046 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124047 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092312.1
  ENSRNOP00000093515.1
RefSeq Acc Id: XP_063124046   ⟸   XM_063267976
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124047   ⟸   XM_063267977
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124045   ⟸   XM_063267975
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AHA9 (UniProtKB/TrEMBL),   A6KUP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124044   ⟸   XM_063267974
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHA9 (UniProtKB/TrEMBL),   A6KUP2 (UniProtKB/TrEMBL)
Protein Domains
Disks large homolog 5 N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000067240 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000104038.1 UniProtKB/TrEMBL
  ENSRNOT00000112108.1 UniProtKB/TrEMBL
InterPro DLG5_N UniProtKB/TrEMBL
NCBI Gene LOC134480482 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen LOC134480482 PhenoGen
RatGTEx ENSRNOG00000067240 RatGTEx
UniProt A0A8I6AHA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHR2 ENTREZGENE, UniProtKB/TrEMBL
  A6KUP2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-05 LOC134480482  uncharacterized LOC134480482      Symbol and Name status set to provisional 70820 PROVISIONAL