Slc16a7 (solute carrier family 16 member 7) - Rat Genome Database

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Gene: Slc16a7 (solute carrier family 16 member 7) Heterocephalus glaber
Analyze
Symbol: Slc16a7
Name: solute carrier family 16 member 7 (Ensembl:Heterocephalus glaber solute carrier family 16 member 7 (Slc16a7), mRNA.)
RGD ID: 18922982
Description: ENCODES a protein that exhibits identical protein binding (ortholog); pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lactate transmembrane transport (ortholog); plasma membrane lactate transport (ortholog); pyruvate transmembrane transport (ortholog); ASSOCIATED WITH obesity (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: monocarboxylate transporter 2; solute carrier family 16, member 7 (monocarboxylic acid transporter 2)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248028,015,061 - 8,191,012 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248028,015,061 - 8,191,031 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a7Naked Mole-Ratobesity  ISOSLC16A7 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20882379


Biological Process

  

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc16a7Naked Mole-Ratbasolateral plasma membrane located_inIEAUniProtKB-SubCell:SL-0026150520179 UniProtGO_REF:0000044
Slc16a7Naked Mole-Ratbasolateral plasma membrane located_inIEAPANTHER:PTN000144881150520179 TreeGrafterGO_REF:0000118
Slc16a7Naked Mole-Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
Slc16a7Naked Mole-Ratcytosol located_inISOSLC16A7 (Homo sapiens)9068941 HPAGO_REF:0000052
Slc16a7Naked Mole-Ratglutamatergic synapse is_active_inISOSlc16a7 (Rattus norvegicus)9068941PMID:15749979SynGOPMID:15749979 and REF_RGD_ID:13702297
Slc16a7Naked Mole-Rathippocampal mossy fiber to CA3 synapse is_active_inISOSlc16a7 (Rattus norvegicus)9068941PMID:15749979SynGOPMID:15749979 and REF_RGD_ID:13702297
Slc16a7Naked Mole-Ratmembrane located_inIEAInterPro:IPR004743150520179 InterProGO_REF:0000002
Slc16a7Naked Mole-Ratmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
Slc16a7Naked Mole-Ratnucleoplasm located_inISOSLC16A7 (Homo sapiens)9068941 HPAGO_REF:0000052
Slc16a7Naked Mole-Ratparallel fiber to Purkinje cell synapse is_active_inISOSlc16a7 (Rattus norvegicus)9068941PMID:15749979SynGOPMID:15749979 and REF_RGD_ID:13702297
Slc16a7Naked Mole-Ratplasma membrane located_inISOSLC16A7 (Homo sapiens)9068941 PMID:15505343 and PMID:32415067UniProtGO_REF:0000052 more ...
Slc16a7Naked Mole-Ratpostsynaptic density membrane is_active_inISOSlc16a7 (Rattus norvegicus)9068941PMID:15749979SynGOPMID:15749979 and REF_RGD_ID:13702297
Slc16a7Naked Mole-RatSchaffer collateral - CA1 synapse is_active_inISOSlc16a7 (Rattus norvegicus)9068941PMID:15749979SynGOPMID:15749979 and REF_RGD_ID:13702297
1 to 13 of 13 rows

Molecular Function
1 to 10 of 10 rows

  
1 to 10 of 10 rows

PMID:21993625   PMID:22301074   PMID:26763976   PMID:30032202  



Slc16a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248028,015,061 - 8,191,012 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248028,015,061 - 8,191,031 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC16A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381259,596,029 - 59,789,841 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1259,596,029 - 59,789,855 (+)EnsemblGRCh38hg38GRCh38
GRCh371259,989,810 - 60,183,622 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361258,369,393 - 58,461,675 (+)NCBINCBI36Build 36hg18NCBI36
Build 341258,369,392 - 58,461,674NCBI
Celera1259,745,720 - 59,838,012 (+)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1257,038,268 - 57,232,240 (+)NCBIHuRef
CHM1_11259,958,039 - 60,151,803 (+)NCBICHM1_1
T2T-CHM13v2.01259,572,554 - 59,766,418 (+)NCBIT2T-CHM13v2.0
Slc16a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910125,055,139 - 125,225,455 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10125,055,139 - 125,225,334 (-)EnsemblGRCm39 Ensembl
GRCm3810125,219,270 - 125,389,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10125,219,270 - 125,389,465 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710124,664,541 - 124,765,591 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610124,630,545 - 124,731,595 (-)NCBIMGSCv36mm8
Celera10127,630,780 - 127,731,940 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1072.31NCBI
Slc16a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8762,929,067 - 63,096,995 (-)NCBIGRCr8
mRatBN7.2761,043,667 - 61,211,547 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl761,051,167 - 61,154,994 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx762,936,997 - 63,040,542 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0765,139,665 - 65,243,207 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0764,915,969 - 65,019,570 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0768,438,341 - 68,606,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl768,446,193 - 68,549,763 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0768,633,417 - 68,801,189 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4765,210,148 - 65,313,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1765,230,721 - 65,390,741 (-)NCBI
Celera758,206,868 - 58,309,915 (-)NCBICelera
Cytogenetic Map7q22NCBI
Slc16a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554587,232,886 - 7,352,782 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554587,232,886 - 7,352,782 (+)NCBIChiLan1.0ChiLan1.0
SLC16A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21034,537,931 - 34,726,021 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11234,529,686 - 34,722,531 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01229,128,600 - 29,317,797 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,390,576 - 29,587,897 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1229,390,576 - 29,528,851 (-)Ensemblpanpan1.1panPan2
SLC16A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1103,333,000 - 3,500,684 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl103,334,126 - 3,496,150 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha103,398,668 - 3,564,721 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0103,356,472 - 3,522,599 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl103,357,277 - 3,519,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1103,323,639 - 3,489,625 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0103,565,685 - 3,731,591 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0103,691,746 - 3,857,780 (+)NCBIUU_Cfam_GSD_1.0
Slc16a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494555,219,046 - 55,388,105 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366463,533,590 - 3,642,526 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366463,482,148 - 3,647,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl524,713,267 - 24,875,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1524,713,009 - 24,871,891 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2526,710,139 - 26,864,757 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11155,541,313 - 55,709,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1155,645,129 - 55,708,356 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037190,169,996 - 190,345,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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1 to 20 of 20 rows
RefSeq Transcripts NM_001310262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004861154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013078291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013078292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013078293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021241344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01071250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01071251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH170546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM486777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 20 of 20 rows

Ensembl Acc Id: ENSHGLT00000020866   ⟹   ENSHGLP00000020664
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248028,015,061 - 8,191,012 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000020867   ⟹   ENSHGLP00000020665
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248028,024,105 - 8,151,947 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000020868   ⟹   ENSHGLP00000020666
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248028,024,105 - 8,109,545 (-)Ensembl
RefSeq Acc Id: NM_001310262   ⟹   NP_001297191
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,063 - 8,142,756 (-)NCBI
RefSeq Acc Id: XM_004861144   ⟹   XP_004861201
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,191,030 (-)NCBI
RefSeq Acc Id: XM_004861145   ⟹   XP_004861202
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,149,329 (-)NCBI
RefSeq Acc Id: XM_004861146   ⟹   XP_004861203
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,131,290 (-)NCBI
RefSeq Acc Id: XM_004861147   ⟹   XP_004861204
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,109,474 (-)NCBI
RefSeq Acc Id: XM_004861148   ⟹   XP_004861205
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,191,030 (-)NCBI
RefSeq Acc Id: XM_004861152   ⟹   XP_004861209
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,191,030 (-)NCBI
RefSeq Acc Id: XM_004861153   ⟹   XP_004861210
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,131,280 (-)NCBI
RefSeq Acc Id: XM_004861154   ⟹   XP_004861211
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,191,031 (-)NCBI
RefSeq Acc Id: XM_013078291   ⟹   XP_012933745
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,120,152 (-)NCBI
RefSeq Acc Id: XM_013078292   ⟹   XP_012933746
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,131,278 (-)NCBI
RefSeq Acc Id: XM_013078293   ⟹   XP_012933747
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,120,153 (-)NCBI
RefSeq Acc Id: XM_021241340   ⟹   XP_021096999
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,191,030 (-)NCBI
RefSeq Acc Id: XM_021241341   ⟹   XP_021097000
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,191,030 (-)NCBI
RefSeq Acc Id: XM_021241343   ⟹   XP_021097002
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,191,031 (-)NCBI
RefSeq Acc Id: XM_021241344   ⟹   XP_021097003
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248028,015,061 - 8,131,280 (-)NCBI
1 to 5 of 19 rows
1 to 5 of 19 rows
RefSeq Acc Id: XP_004861211   ⟸   XM_004861154
- Peptide Label: isoform X1
- UniProtKB: G5BJ18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097002   ⟸   XM_021241343
- Peptide Label: isoform X1
- UniProtKB: G5BJ18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861205   ⟸   XM_004861148
- Peptide Label: isoform X1
- UniProtKB: G5BJ18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861209   ⟸   XM_004861152
- Peptide Label: isoform X1
- UniProtKB: G5BJ18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861201   ⟸   XM_004861144
- Peptide Label: isoform X1
- UniProtKB: G5BJ18 (UniProtKB/TrEMBL)



1 to 17 of 17 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000014780 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020867 ENTREZGENE
  ENSHGLT00000020868 ENTREZGENE
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MCT UniProtKB/TrEMBL
  MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Proton-linked_MCT UniProtKB/TrEMBL
KEGG Report hgl:101722497 UniProtKB/TrEMBL
NCBI Gene Slc16a7 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  PTHR11360:SF25 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt G5BJ18 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows