Rpl10 (ribosomal protein L10) - Rat Genome Database

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Gene: Rpl10 (ribosomal protein L10) Heterocephalus glaber
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Symbol: Rpl10
Name: ribosomal protein L10
RGD ID: 18918512
Description: ENCODES a protein that exhibits translation regulator activity (ortholog); INVOLVED IN embryonic brain development (ortholog); liver regeneration (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 17 of 17 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl10Naked Mole-Ratadrenoleukodystrophy  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: AdrenoleukodystrophyClinVarPMID:10480214 more ...
Rpl10Naked Mole-Ratautistic disorder  ISORPL10 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16940977 more ...
Rpl10Naked Mole-Ratautosomal hemophilia A  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Rpl10Naked Mole-RatBarth syndrome  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: 3-Methylglutaconic aciduria type 2ClinVarPMID:10480214 more ...
Rpl10Naked Mole-Ratcerebral creatine deficiency syndrome 1  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Creatine transporter deficiencyClinVarPMID:10480214 more ...
Rpl10Naked Mole-Ratdyskeratosis congenita  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenitaClinVarPMID:10480214 more ...
Rpl10Naked Mole-RatEmery-Dreifuss muscular dystrophy  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: X-linked Emery-Dreifuss muscular dystrophyClinVarPMID:10480214 more ...
Rpl10Naked Mole-Ratfactor VIII deficiency  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Rpl10Naked Mole-Ratfavism  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Anemia more ...ClinVarPMID:10480214 more ...
Rpl10Naked Mole-Ratgenetic disease  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Rpl10Naked Mole-Ratimmunodeficiency 33  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 33ClinVarPMID:25741868
Rpl10Naked Mole-Ratparaplegia  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic paraplegiaClinVarPMID:10480214 more ...
Rpl10Naked Mole-Ratperiventricular nodular heterotopia  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Heterotopia more ...ClinVarPMID:10480214 more ...
Rpl10Naked Mole-Ratsevere congenital encephalopathy due to MECP2 mutation  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Severe neonatal-onset encephalopathy with microcephalyClinVarPMID:15351775 more ...
Rpl10Naked Mole-RatSplenomegaly  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: SplenomegalyClinVarPMID:25741868
Rpl10Naked Mole-Ratsyndromic X-linked intellectual disability 35  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disability more ...ClinVarPMID:18258260 more ...
Rpl10Naked Mole-Ratsyndromic X-linked intellectual disability Lubs type  ISORPL10 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:22679399 more ...
1 to 17 of 17 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl10Naked Mole-RatProstatic Neoplasms  ISORPL10 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:17013881
Rpl10Naked Mole-RatT-cell acute lymphoblastic leukemia  ISORPL10 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:23263491
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl10Naked Mole-Ratautistic disorder  ISORPL10 (Homo sapiens)7240710 OMIM 
Rpl10Naked Mole-Ratsyndromic X-linked intellectual disability 35  ISORPL10 (Homo sapiens)7240710 OMIM 


Biological Process

  

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl10Naked Mole-Ratcytoplasm located_inIEAUniProtKB:Q6ZWV3 and ensembl:ENSMUSP00000082055150520179 EnsemblGO_REF:0000107
Rpl10Naked Mole-Ratcytoplasmic side of rough endoplasmic reticulum membrane located_inISORPL10 (Sus scrofa)9068941 PMID:24930395UniProtPMID:24930395
Rpl10Naked Mole-Ratcytosol located_inISORPL10 (Homo sapiens)9068941 HPAGO_REF:0000052
Rpl10Naked Mole-Ratcytosolic large ribosomal subunit part_ofIEAARBA:ARBA00033539150520179 UniProtGO_REF:0000117
Rpl10Naked Mole-Ratcytosolic large ribosomal subunit part_ofIEAUniProtKB:Q6ZWV3 and ensembl:ENSMUSP00000082055150520179 EnsemblGO_REF:0000107
Rpl10Naked Mole-Ratcytosolic large ribosomal subunit  ISORpl10 (Rattus norvegicus)9068941 RGDPMID:7094919 and REF_RGD_ID:10768835
Rpl10Naked Mole-Ratcytosolic ribosome part_ofISORPL10 (Homo sapiens)9068941 PMID:23636399FlyBasePMID:23636399
Rpl10Naked Mole-Ratendoplasmic reticulum located_inISORPL10 (Homo sapiens)9068941 LIFEdbGO_REF:0000052 and GO_REF:0000054
Rpl10Naked Mole-Ratlarge ribosomal subunit part_ofISORPL10 (Sus scrofa)9068941 PMID:24930395UniProtPMID:24930395
Rpl10Naked Mole-Ratnucleus located_inISORPL10 (Homo sapiens)9068941 PMID:10508860CAFAPMID:10508860
Rpl10Naked Mole-Ratprotein-containing complex part_ofISORPL10 (Homo sapiens)9068941 PMID:10508860CAFAPMID:10508860
Rpl10Naked Mole-Ratribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-0687150520179 UniProtGO_REF:0000043
Rpl10Naked Mole-Ratribosome located_inIEAInterPro:IPR001197 more ...150520179 InterProGO_REF:0000002
Rpl10Naked Mole-Ratribosome located_inIEAUniProtKB-KW:KW-0689150520179 UniProtGO_REF:0000043
Rpl10Naked Mole-Ratsmooth endoplasmic reticulum located_inIEAUniProtKB:Q6ZWV3 and ensembl:ENSMUSP00000082055150520179 EnsemblGO_REF:0000107
Rpl10Naked Mole-Ratsynapse is_active_inIEAUniProtKB:Q6ZWV3 and ensembl:ENSMUSP00000082055150520179 EnsemblGO_REF:0000107
1 to 16 of 16 rows

Molecular Function

  

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl10Naked Mole-Ratribosome biogenesis pathway   ISORPL10 (Homo sapiens)9068941 RGDPMID:23636399 and REF_RGD_ID:10002762
Rpl10Naked Mole-Rattranslation pathway   ISORPL10 (Homo sapiens)9068941 RGDPMID:23636399 and REF_RGD_ID:10002762
PMID:22301074   PMID:30032202  



Rpl10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RPL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,398,065 - 154,402,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,389,955 - 154,409,168 (+)EnsemblGRCh38hg38GRCh38
GRCh37X153,626,406 - 153,630,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,279,912 - 153,283,874 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X153,147,564 - 153,151,527NCBI
CeleraX153,787,629 - 153,791,737 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,204,017 - 142,208,069 (+)NCBIHuRef
CHM1_1X153,538,214 - 153,542,323 (+)NCBICHM1_1
T2T-CHM13v2.0X152,634,585 - 152,638,859 (+)NCBIT2T-CHM13v2.0
Rpl10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,314,463 - 73,316,741 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,314,418 - 73,316,741 (+)EnsemblGRCm39 Ensembl
GRCm38X74,270,816 - 74,273,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,270,812 - 74,273,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,516,155 - 71,518,474 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,523,577 - 70,525,846 (+)NCBIMGSCv36mm8
CeleraX65,524,593 - 65,526,912 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Rpl10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,205,850 - 157,208,057 (+)NCBIGRCr8
mRatBN7.2X152,054,562 - 152,056,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,054,452 - 152,056,761 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,195,691 - 154,197,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,758,924 - 157,761,131 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,430,723 - 155,432,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,438,251 - 156,440,461 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,438,251 - 156,440,461 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,178,398 - 152,180,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,336,632 - 160,338,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X160,413,020 - 160,415,223 (-)NCBI
Celera1135,839,998 - 135,842,208 (-)NCBICelera
Cytogenetic MapXq37NCBI
Rpl10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580903,412 - 906,439 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580903,618 - 906,439 (+)NCBIChiLan1.0ChiLan1.0
RPL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,372,578 - 154,375,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,376,267 - 154,378,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,839,739 - 143,844,026 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,707,645 - 153,712,855 (+)NCBIpanpan1.1PanPan1.1panPan2
RPL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,098,020 - 122,100,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,098,020 - 122,100,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,239,741 - 125,242,433 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,239,736 - 125,243,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,008,797 - 121,011,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,523,664 - 123,526,357 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,285,544 - 123,288,236 (+)NCBIUU_Cfam_GSD_1.0
Rpl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,409,172 - 119,411,802 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,146,809 - 1,149,618 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,146,994 - 1,149,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,926,772 - 124,929,791 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,623,532 - 66,627,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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RefSeq Transcripts XM_004874993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01106380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01007359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004874993   ⟹   XP_004875050
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBI
Protein RefSeqs XP_004875050 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003154
GenBank Protein JAN96273 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004875050   ⟸   XM_004874993
- UniProtKB: A0A0P6IZG8 (UniProtKB/TrEMBL),   A0AAX6QHL6 (UniProtKB/TrEMBL)



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000002349 ENTREZGENE
Ensembl Transcript ENSHGLT00000003209 ENTREZGENE
Gene3D-CATH 3.30.60.300 UniProtKB/TrEMBL
  3.90.1170.10 UniProtKB/TrEMBL
InterPro Ribosomal_L10e UniProtKB/TrEMBL
  Ribosomal_L10e/L16 UniProtKB/TrEMBL
  Ribosomal_L10e/L16_sf UniProtKB/TrEMBL
  Ribosomal_L10e_CS UniProtKB/TrEMBL
  Ribosomal_uL16 UniProtKB/TrEMBL
NCBI Gene Rpl10 ENTREZGENE
PANTHER PTHR11726 UniProtKB/TrEMBL
Pfam Ribosomal_L16 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L10E UniProtKB/TrEMBL
Superfamily-SCOP SSF54686 UniProtKB/TrEMBL
UniProt A0A0P6IZG8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QHL6 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows