Rpl10 (ribosomal protein L10) - Rat Genome Database

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Gene: Rpl10 (ribosomal protein L10) Heterocephalus glaber
Analyze
Symbol: Rpl10
Name: ribosomal protein L10
RGD ID: 18918512
Description: ENCODES a protein that exhibits translation regulator activity (ortholog); INVOLVED IN embryonic brain development (ortholog); liver regeneration (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RPL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,398,065 - 154,402,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,389,955 - 154,409,168 (+)EnsemblGRCh38hg38GRCh38
GRCh37X153,626,406 - 153,630,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,279,912 - 153,283,874 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X153,147,564 - 153,151,527NCBI
CeleraX153,787,629 - 153,791,737 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,204,017 - 142,208,069 (+)NCBIHuRef
CHM1_1X153,538,214 - 153,542,323 (+)NCBICHM1_1
T2T-CHM13v2.0X152,634,585 - 152,638,859 (+)NCBIT2T-CHM13v2.0
Rpl10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,314,463 - 73,316,741 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,314,418 - 73,316,741 (+)EnsemblGRCm39 Ensembl
GRCm38X74,270,816 - 74,273,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,270,812 - 74,273,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,516,155 - 71,518,474 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,523,577 - 70,525,846 (+)NCBIMGSCv36mm8
CeleraX65,524,593 - 65,526,912 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Rpl10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,205,850 - 157,208,057 (+)NCBIGRCr8
mRatBN7.2X152,054,562 - 152,056,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,054,452 - 152,056,761 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,195,691 - 154,197,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,758,924 - 157,761,131 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,430,723 - 155,432,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,438,251 - 156,440,461 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,438,251 - 156,440,461 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,178,398 - 152,180,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,336,632 - 160,338,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X160,413,020 - 160,415,223 (-)NCBI
Celera1135,839,998 - 135,842,208 (-)NCBICelera
Cytogenetic MapXq37NCBI
Rpl10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580903,412 - 906,439 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580903,618 - 906,439 (+)NCBIChiLan1.0ChiLan1.0
RPL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,372,578 - 154,375,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,376,267 - 154,378,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,839,739 - 143,844,026 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,707,645 - 153,712,855 (+)NCBIpanpan1.1PanPan1.1panPan2
RPL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,098,020 - 122,100,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,098,020 - 122,100,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,239,741 - 125,242,433 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,239,736 - 125,243,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,008,797 - 121,011,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,523,664 - 123,526,357 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,285,544 - 123,288,236 (+)NCBIUU_Cfam_GSD_1.0
Rpl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,409,172 - 119,411,802 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,146,809 - 1,149,618 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,146,994 - 1,149,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,926,772 - 124,929,791 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,623,532 - 66,627,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004874993   ⟹   XP_004875050
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004875050 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003154
  ENSHGLP00000003155
  ENSHGLP00100013513
GenBank Protein JAN96273 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004875050   ⟸   XM_004874993
- UniProtKB: A0A0P6IZG8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002349 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100009988 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003209 ENTREZGENE
  ENSHGLT00000003210 UniProtKB/TrEMBL
  ENSHGLT00100013668 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.300 UniProtKB/TrEMBL
  3.90.1170.10 UniProtKB/TrEMBL
InterPro Ribosomal_L10e UniProtKB/TrEMBL
  Ribosomal_L10e/L16 UniProtKB/TrEMBL
  Ribosomal_L10e/L16_sf UniProtKB/TrEMBL
  Ribosomal_L10e_CS UniProtKB/TrEMBL
  Ribosomal_uL16 UniProtKB/TrEMBL
NCBI Gene Rpl10 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L10 UniProtKB/TrEMBL
  PTHR11726 UniProtKB/TrEMBL
Pfam Ribosomal_L16 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L10E UniProtKB/TrEMBL
Superfamily-SCOP SSF54686 UniProtKB/TrEMBL
UniProt A0A0P6IZG8 ENTREZGENE, UniProtKB/TrEMBL