RPL10 (ribosomal protein L10) - Rat Genome Database

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Gene: RPL10 (ribosomal protein L10) Sus scrofa
Analyze
Symbol: RPL10
Name: ribosomal protein L10
RGD ID: 13984864
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); translation regulator activity (ortholog); INVOLVED IN embryonic brain development (ortholog); liver regeneration (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane; large ribosomal subunit; cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 60S ribosomal protein L10; protein QM homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,926,482 - 124,929,797 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8672129   PMID:14681463   PMID:16441306   PMID:24930395  


Genomics

Comparative Map Data
RPL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,926,482 - 124,929,797 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX154,389,955 - 154,409,168 (+)EnsemblGRCh38hg38GRCh38
GRCh38X154,398,065 - 154,402,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X153,626,406 - 153,630,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,279,912 - 153,283,874 (+)NCBINCBI36hg18NCBI36
Build 34X153,147,564 - 153,151,527NCBI
CeleraX153,787,629 - 153,791,737 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX142,204,017 - 142,208,069 (+)NCBIHuRef
CHM1_1X153,538,049 - 153,542,323 (+)NCBICHM1_1
Rpl10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,314,422 - 73,316,741 (+)NCBIGRCm39mm39
GRCm39 EnsemblX73,314,418 - 73,316,741 (+)Ensembl
GRCm38X74,270,816 - 74,273,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,270,812 - 74,273,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,516,155 - 71,518,474 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X70,523,577 - 70,525,846 (+)NCBImm8
CeleraX65,524,593 - 65,526,912 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Rpl10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X152,054,547 - 152,056,757 (+)NCBI
Rnor_6.0 EnsemblX156,438,251 - 156,440,461 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X156,438,251 - 156,440,461 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01152,178,398 - 152,180,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,336,632 - 160,338,842 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X160,413,020 - 160,415,223 (-)NCBI
Celera1135,839,998 - 135,842,208 (-)NCBICelera
Cytogenetic MapXq37NCBI
Rpl10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580903,412 - 906,439 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580903,618 - 906,439 (+)NCBIChiLan1.0ChiLan1.0
RPL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X153,707,645 - 153,712,855 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X143,839,739 - 143,844,026 (+)NCBIMhudiblu_PPA_v0panPan3
RPL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,098,020 - 122,100,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,098,020 - 122,100,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,239,741 - 125,242,433 (+)NCBI
UMICH_Zoey_3.1X121,008,797 - 121,011,489 (+)NCBI
UNSW_CanFamBas_1.0X123,523,664 - 123,526,357 (+)NCBI
UU_Cfam_GSD_1.0X123,285,544 - 123,288,236 (+)NCBI
Rpl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,409,172 - 119,411,802 (+)NCBI
SpeTri2.0NW_0049368091,146,994 - 1,149,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL10
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Rpl10
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000041617   ⟹   ENSSSCP00000035267
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,926,772 - 124,929,797 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043358   ⟹   ENSSSCP00000042364
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,927,371 - 124,929,790 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068711   ⟹   ENSSSCP00000074121
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,926,482 - 124,929,791 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083966   ⟹   ENSSSCP00000068012
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,926,772 - 124,929,797 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089173   ⟹   ENSSSCP00000060715
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,926,482 - 124,929,791 (+)Ensembl
RefSeq Acc Id: NM_001044543   ⟹   NP_001038008
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001038008 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAV85773 (Get FASTA)   NCBI Sequence Viewer  
  AAV85774 (Get FASTA)   NCBI Sequence Viewer  
  Q29195 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001038008   ⟸   NM_001044543
- UniProtKB: Q29195 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000068012   ⟸   ENSSSCT00000083966
RefSeq Acc Id: ENSSSCP00000074121   ⟸   ENSSSCT00000068711
RefSeq Acc Id: ENSSSCP00000060715   ⟸   ENSSSCT00000089173
RefSeq Acc Id: ENSSSCP00000035267   ⟸   ENSSSCT00000041617
RefSeq Acc Id: ENSSSCP00000042364   ⟸   ENSSSCT00000043358
Protein Domains
Ribosomal_L16


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035997 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005008194 UniProtKB/Swiss-Prot
  ENSSSCG00030013154 UniProtKB/Swiss-Prot
  ENSSSCG00035049337 UniProtKB/Swiss-Prot
  ENSSSCG00040055315 UniProtKB/Swiss-Prot
  ENSSSCG00060035998 UniProtKB/Swiss-Prot
  ENSSSCG00065011221 UniProtKB/Swiss-Prot
Ensembl Protein ENSSSCP00000035267 UniProtKB/TrEMBL
  ENSSSCP00000042364 UniProtKB/TrEMBL
  ENSSSCP00000060715 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCP00000068012 UniProtKB/TrEMBL
  ENSSSCP00000074121 UniProtKB/TrEMBL
  ENSSSCP00005007415 UniProtKB/Swiss-Prot
  ENSSSCP00030008010 UniProtKB/Swiss-Prot
  ENSSSCP00035026695 UniProtKB/Swiss-Prot
  ENSSSCP00040032264 UniProtKB/Swiss-Prot
  ENSSSCP00060020889 UniProtKB/Swiss-Prot
  ENSSSCP00065006120 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000041617 UniProtKB/TrEMBL
  ENSSSCT00000043358 UniProtKB/TrEMBL
  ENSSSCT00000068711 UniProtKB/TrEMBL
  ENSSSCT00000083966 UniProtKB/TrEMBL
  ENSSSCT00000089173 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCT00005012576 UniProtKB/Swiss-Prot
  ENSSSCT00030018037 UniProtKB/Swiss-Prot
  ENSSSCT00035065804 UniProtKB/Swiss-Prot
  ENSSSCT00040075181 UniProtKB/Swiss-Prot
  ENSSSCT00060048811 UniProtKB/Swiss-Prot
  ENSSSCT00065015009 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.1170.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_L10e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L10e/L16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L10e/L16_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L10e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:733593 UniProtKB/Swiss-Prot
NCBI Gene RPL10 ENTREZGENE
PANTHER PTHR11726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Ribosomal_L10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L10E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54686 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs uL16_euk_arch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287AEG8_PIG UniProtKB/TrEMBL
  A0A5G2R1D5_PIG UniProtKB/TrEMBL
  A0A5G2RCJ3_PIG UniProtKB/TrEMBL
  A0A5S6H8S8_PIG UniProtKB/TrEMBL
  Q29195 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q29322 UniProtKB/Swiss-Prot
  Q2YGT8 UniProtKB/Swiss-Prot