RPL10 (ribosomal protein L10) - Rat Genome Database

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Gene: RPL10 (ribosomal protein L10) Sus scrofa
Analyze
Symbol: RPL10
Name: ribosomal protein L10
RGD ID: 13984864
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); translation regulator activity (ortholog); INVOLVED IN embryonic brain development (ortholog); liver regeneration (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane; large ribosomal subunit; cytosol (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L10; large ribosomal subunit protein uL16; protein QM homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,926,772 - 124,929,791 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8672129   PMID:14681463   PMID:16441306   PMID:22301074   PMID:24930395   PMID:30032202  


Genomics

Comparative Map Data
RPL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,926,772 - 124,929,791 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,398,065 - 154,402,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,389,955 - 154,409,168 (+)EnsemblGRCh38hg38GRCh38
GRCh37X153,626,406 - 153,630,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,279,912 - 153,283,874 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X153,147,564 - 153,151,527NCBI
CeleraX153,787,629 - 153,791,737 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,204,017 - 142,208,069 (+)NCBIHuRef
CHM1_1X153,538,214 - 153,542,323 (+)NCBICHM1_1
T2T-CHM13v2.0X152,634,585 - 152,638,859 (+)NCBIT2T-CHM13v2.0
Rpl10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,314,463 - 73,316,741 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,314,418 - 73,316,741 (+)EnsemblGRCm39 Ensembl
GRCm38X74,270,816 - 74,273,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,270,812 - 74,273,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,516,155 - 71,518,474 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,523,577 - 70,525,846 (+)NCBIMGSCv36mm8
CeleraX65,524,593 - 65,526,912 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Rpl10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,205,850 - 157,208,057 (+)NCBIGRCr8
mRatBN7.2X152,054,562 - 152,056,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,054,452 - 152,056,761 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,195,691 - 154,197,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,758,924 - 157,761,131 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,430,723 - 155,432,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,438,251 - 156,440,461 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,438,251 - 156,440,461 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,178,398 - 152,180,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,336,632 - 160,338,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X160,413,020 - 160,415,223 (-)NCBI
Celera1135,839,998 - 135,842,208 (-)NCBICelera
Cytogenetic MapXq37NCBI
Rpl10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580903,412 - 906,439 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580903,618 - 906,439 (+)NCBIChiLan1.0ChiLan1.0
RPL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,372,578 - 154,375,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,376,267 - 154,378,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,839,739 - 143,844,026 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,707,645 - 153,712,855 (+)NCBIpanpan1.1PanPan1.1panPan2
RPL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,098,020 - 122,100,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,098,020 - 122,100,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,239,741 - 125,242,433 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,239,736 - 125,243,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,008,797 - 121,011,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,523,664 - 123,526,357 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,285,544 - 123,288,236 (+)NCBIUU_Cfam_GSD_1.0
Rpl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,409,172 - 119,411,802 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,146,809 - 1,149,618 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,146,994 - 1,149,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,623,532 - 66,627,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946860,639 - 863,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL10
13 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000041617   ⟹   ENSSSCP00000035267
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,926,784 - 124,929,791 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043358   ⟹   ENSSSCP00000042364
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,927,371 - 124,929,790 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068711   ⟹   ENSSSCP00000074121
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,927,192 - 124,929,788 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083966   ⟹   ENSSSCP00000068012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,926,772 - 124,929,791 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089173   ⟹   ENSSSCP00000060715
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX124,927,492 - 124,929,790 (+)Ensembl
RefSeq Acc Id: NM_001044543   ⟹   NP_001038008
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X124,927,249 - 124,929,791 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001038008   ⟸   NM_001044543
- UniProtKB: Q29322 (UniProtKB/Swiss-Prot),   Q2YGT8 (UniProtKB/Swiss-Prot),   Q29195 (UniProtKB/Swiss-Prot),   A0A0B8S018 (UniProtKB/TrEMBL),   A0A8D1PTB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000068012   ⟸   ENSSSCT00000083966
RefSeq Acc Id: ENSSSCP00000074121   ⟸   ENSSSCT00000068711
RefSeq Acc Id: ENSSSCP00000060715   ⟸   ENSSSCT00000089173
RefSeq Acc Id: ENSSSCP00000035267   ⟸   ENSSSCT00000041617
RefSeq Acc Id: ENSSSCP00000042364   ⟸   ENSSSCT00000043358


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035997 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008194 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025000009 UniProtKB/TrEMBL
  ENSSSCG00030013154 UniProtKB/Swiss-Prot
  ENSSSCG00035049337 UniProtKB/Swiss-Prot
  ENSSSCG00040055315 UniProtKB/Swiss-Prot
  ENSSSCG00045000915 UniProtKB/TrEMBL
  ENSSSCG00050075454 UniProtKB/TrEMBL
  ENSSSCG00055005140 UniProtKB/TrEMBL
  ENSSSCG00060035998 UniProtKB/Swiss-Prot
  ENSSSCG00065011221 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000041617.3 UniProtKB/TrEMBL
  ENSSSCT00000043358 ENTREZGENE
  ENSSSCT00000043358.2 UniProtKB/TrEMBL
  ENSSSCT00000068711.2 UniProtKB/TrEMBL
  ENSSSCT00000083966.2 UniProtKB/TrEMBL
  ENSSSCT00000089173.2 UniProtKB/TrEMBL
  ENSSSCT00005012509.1 UniProtKB/TrEMBL
  ENSSSCT00005012535.1 UniProtKB/TrEMBL
  ENSSSCT00005012576.1 UniProtKB/Swiss-Prot
  ENSSSCT00005012606.1 UniProtKB/TrEMBL
  ENSSSCT00005012636.1 UniProtKB/TrEMBL
  ENSSSCT00025000020.1 UniProtKB/TrEMBL
  ENSSSCT00030018037.1 UniProtKB/Swiss-Prot
  ENSSSCT00035065804.1 UniProtKB/Swiss-Prot
  ENSSSCT00040075181.1 UniProtKB/Swiss-Prot
  ENSSSCT00045001361.1 UniProtKB/TrEMBL
  ENSSSCT00050103471.1 UniProtKB/TrEMBL
  ENSSSCT00055010044.1 UniProtKB/TrEMBL
  ENSSSCT00060048811.1 UniProtKB/Swiss-Prot
  ENSSSCT00065015009.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.60.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1170.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_L10e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L10e/L16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L10e/L16_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L10e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_uL16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:733593 UniProtKB/Swiss-Prot
NCBI Gene RPL10 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L10 UniProtKB/Swiss-Prot
  60S RIBOSOMAL PROTEIN L10 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L10 UniProtKB/TrEMBL
  PTHR11726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Ribosomal_L10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L10E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54686 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0B8S018 ENTREZGENE
  A0A4X1T3W2_PIG UniProtKB/TrEMBL
  A0A4X1T5U8_PIG UniProtKB/TrEMBL
  A0A4X1T6D6_PIG UniProtKB/TrEMBL
  A0A8D1F496_PIG UniProtKB/TrEMBL
  A0A8D1PTB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A900R0B1_PIG UniProtKB/TrEMBL
  Q29195 ENTREZGENE
  Q29322 ENTREZGENE
  Q2YGT8 ENTREZGENE
  RL10_PIG UniProtKB/Swiss-Prot
UniProt Secondary A0A287AEG8 UniProtKB/TrEMBL
  A0A5G2R1D5 UniProtKB/TrEMBL
  A0A5G2RCJ3 UniProtKB/TrEMBL
  A0A5S6H8S8 UniProtKB/TrEMBL
  Q29322 UniProtKB/Swiss-Prot
  Q2YGT8 UniProtKB/Swiss-Prot