Cspg5 (chondroitin sulfate proteoglycan 5) - Rat Genome Database

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Gene: Cspg5 (chondroitin sulfate proteoglycan 5) Heterocephalus glaber
Analyze
Symbol: Cspg5
Name: chondroitin sulfate proteoglycan 5
RGD ID: 18916873
Description: INVOLVED IN axon regeneration (ortholog); cytoskeleton organization (ortholog); glial cell projection elongation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,861,847 - 73,873,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473073,860,578 - 73,871,515 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cspg5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,861,847 - 73,873,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473073,860,578 - 73,871,515 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CSPG5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38347,562,238 - 47,580,240 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl347,562,238 - 47,580,792 (-)EnsemblGRCh38hg38GRCh38
GRCh37347,603,728 - 47,621,730 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36347,578,732 - 47,595,363 (-)NCBINCBI36Build 36hg18NCBI36
Build 34347,578,732 - 47,595,193NCBI
Celera347,545,497 - 47,562,148 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef347,649,609 - 47,667,613 (-)NCBIHuRef
CHM1_1347,553,635 - 47,571,723 (-)NCBICHM1_1
T2T-CHM13v2.0347,581,316 - 47,599,318 (-)NCBIT2T-CHM13v2.0
Cspg5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,072,851 - 110,091,644 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9110,072,851 - 110,091,644 (+)EnsemblGRCm39 Ensembl
GRCm389110,243,783 - 110,262,576 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,243,783 - 110,262,576 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,146,287 - 110,165,080 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369110,090,627 - 110,107,752 (+)NCBIMGSCv36mm8
Celera9109,972,242 - 109,991,159 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.89NCBI
Cspg5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88119,098,932 - 119,113,191 (+)NCBIGRCr8
mRatBN7.28110,220,506 - 110,234,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,220,653 - 110,234,758 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,836,168 - 115,850,256 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08114,035,357 - 114,049,445 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,878,144 - 111,892,232 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,333,695 - 118,348,040 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,333,706 - 118,347,582 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,686,012 - 117,699,639 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,621,534 - 114,635,336 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18114,640,987 - 114,654,786 (+)NCBI
Celera8109,507,895 - 109,521,130 (+)NCBICelera
Cytogenetic Map8q32NCBI
Cspg5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,734,561 - 24,747,414 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,735,155 - 24,746,580 (+)NCBIChiLan1.0ChiLan1.0
CSPG5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2247,520,542 - 47,537,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1347,525,309 - 47,541,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0347,464,341 - 47,482,910 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1348,563,837 - 48,579,593 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,564,199 - 48,580,048 (-)Ensemblpanpan1.1panPan2
CSPG5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,344,098 - 41,356,810 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,344,093 - 41,356,800 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,259,864 - 41,288,755 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02041,826,723 - 41,855,158 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,826,723 - 41,839,797 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12041,068,831 - 41,097,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02041,469,308 - 41,498,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,750,035 - 41,778,891 (+)NCBIUU_Cfam_GSD_1.0
Cspg5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,686,474 - 201,700,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365961,235,545 - 1,251,166 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365961,235,550 - 1,251,100 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSPG5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,387,224 - 30,411,850 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,387,225 - 30,404,181 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21333,636,335 - 33,642,435 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSPG5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,963,493 - 8,982,308 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,963,676 - 8,980,225 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041158,141,489 - 158,160,497 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023764   ⟹   ENSHGLP00000023547
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473073,861,847 - 73,871,354 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000023765   ⟹   ENSHGLP00000023548
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473073,862,230 - 73,873,521 (+)Ensembl
RefSeq Acc Id: XM_004834970   ⟹   XP_004835027
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,860,578 - 73,871,515 (+)NCBI
RefSeq Acc Id: XM_004834971   ⟹   XP_004835028
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473073,860,588 - 73,871,515 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004835027 (Get FASTA)   NCBI Sequence Viewer  
  XP_004835028 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023547
  ENSHGLP00000023548
Reference Protein Sequences
RefSeq Acc Id: XP_004835027   ⟸   XM_004834970
- Peptide Label: isoform X1
- UniProtKB: G5BTA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835028   ⟸   XM_004834971
- Peptide Label: isoform X2
- UniProtKB: G5BTA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023547   ⟸   ENSHGLT00000023764
RefSeq Acc Id: ENSHGLP00000023548   ⟸   ENSHGLT00000023765


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016793 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023764 ENTREZGENE
  ENSHGLT00000023765 ENTREZGENE
InterPro CSPG5 UniProtKB/TrEMBL
  CSPG5_S_attach_dom UniProtKB/TrEMBL
  Neural_ProG_Cyt UniProtKB/TrEMBL
NCBI Gene Cspg5 ENTREZGENE
PANTHER CHONDROITIN SULFATE PROTEOGLYCAN 5 UniProtKB/TrEMBL
  CHONDROITIN SULFATE PROTEOGLYCAN 5 -RELATED UniProtKB/TrEMBL
Pfam Chon_Sulph_att UniProtKB/TrEMBL
  Neural_ProG_Cyt UniProtKB/TrEMBL
UniProt G5BTA3 ENTREZGENE, UniProtKB/TrEMBL