Tac1 (tachykinin precursor 1) - Rat Genome Database

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Gene: Tac1 (tachykinin precursor 1) Heterocephalus glaber
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Symbol: Tac1
Name: tachykinin precursor 1
RGD ID: 18908487
Description: ENCODES a protein that exhibits neuromedin K receptor binding (ortholog); receptor ligand activity (ortholog); substance K receptor binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); associative learning (ortholog); cellular response to nerve growth factor stimulus (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); allergic disease (ortholog); amnestic disorder (ortholog); FOUND IN extracellular space (ortholog); neuronal dense core vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protachykinin-1; protachykinin-1 isoform beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248134,542,011 - 4,550,486 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248134,542,226 - 4,550,378 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Tac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248134,542,011 - 4,550,486 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248134,542,226 - 4,550,378 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38797,732,086 - 97,740,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl797,732,084 - 97,740,472 (+)EnsemblGRCh38hg38GRCh38
GRCh37797,361,398 - 97,369,784 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36797,199,311 - 97,207,720 (+)NCBINCBI36Build 36hg18NCBI36
Build 34797,006,025 - 97,014,433NCBI
Celera792,055,970 - 92,064,483 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef791,962,648 - 91,971,157 (+)NCBIHuRef
CHM1_1797,291,306 - 97,299,818 (+)NCBICHM1_1
T2T-CHM13v2.0798,961,638 - 98,970,024 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2796,683,759 - 96,692,272 (+)NCBI
Tac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3967,555,061 - 7,562,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl67,554,879 - 7,565,834 (+)EnsemblGRCm39 Ensembl
GRCm3867,555,061 - 7,562,978 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl67,554,879 - 7,565,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv3767,505,071 - 7,512,973 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3667,505,071 - 7,512,973 (+)NCBIMGSCv36mm8
Celera67,693,231 - 7,701,130 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map63.31NCBI
Tac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8436,645,344 - 36,653,548 (+)NCBIGRCr8
mRatBN7.2435,679,183 - 35,687,180 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl435,679,704 - 35,687,178 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx440,638,023 - 40,645,989 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0436,564,213 - 36,572,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0434,981,526 - 34,989,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0433,638,853 - 33,646,819 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl433,638,709 - 33,646,819 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0433,499,891 - 33,507,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4432,649,666 - 32,657,632 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1432,768,205 - 32,776,170 (+)NCBI
Celera431,183,136 - 31,191,779 (+)NCBICelera
Cytogenetic Map4q21NCBI
Tac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543213,991,414 - 13,999,728 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543213,991,647 - 13,999,665 (+)NCBIChiLan1.0ChiLan1.0
TAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26115,561,721 - 115,570,273 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17163,826,347 - 163,834,906 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0789,675,834 - 89,684,391 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17103,257,450 - 103,266,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7103,257,501 - 103,266,389 (+)Ensemblpanpan1.1panPan2
TAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11422,631,106 - 22,640,283 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1422,632,642 - 22,640,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1422,207,754 - 22,215,926 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01422,451,048 - 22,459,223 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11422,597,269 - 22,605,445 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01422,330,414 - 22,338,555 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01422,594,017 - 22,602,196 (+)NCBIUU_Cfam_GSD_1.0
Tac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511835,921,952 - 35,930,508 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365852,932,727 - 2,941,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365852,932,783 - 2,941,141 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl977,197,536 - 77,206,523 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1977,197,403 - 77,206,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2984,764,564 - 84,773,747 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12151,339,085 - 51,347,561 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2151,339,095 - 51,347,550 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604253,024,229 - 53,032,700 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000001880   ⟹   ENSHGLP00000001834
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248134,542,011 - 4,550,486 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000001881   ⟹   ENSHGLP00000001835
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248134,542,309 - 4,550,361 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000001882   ⟹   ENSHGLP00000001836
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248134,542,319 - 4,550,361 (+)Ensembl
RefSeq Acc Id: XM_004862726   ⟹   XP_004862783
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248134,542,281 - 4,550,378 (+)NCBI
RefSeq Acc Id: XM_004862727   ⟹   XP_004862784
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248134,542,319 - 4,550,378 (+)NCBI
RefSeq Acc Id: XM_013078857   ⟹   XP_012934311
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248134,542,230 - 4,550,378 (+)NCBI
RefSeq Acc Id: XM_013078858   ⟹   XP_012934312
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248134,542,308 - 4,550,378 (+)NCBI
RefSeq Acc Id: XM_021242864   ⟹   XP_021098523
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248134,542,226 - 4,550,378 (+)NCBI
RefSeq Acc Id: XM_021242865   ⟹   XP_021098524
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248134,542,641 - 4,550,378 (+)NCBI
RefSeq Acc Id: XP_021098523   ⟸   XM_021242864
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JY17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012934311   ⟸   XM_013078857
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004862783   ⟸   XM_004862726
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JY17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012934312   ⟸   XM_013078858
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004862784   ⟸   XM_004862727
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021098524   ⟸   XM_021242865
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JY17 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000001834   ⟸   ENSHGLT00000001880
Ensembl Acc Id: ENSHGLP00000001836   ⟸   ENSHGLT00000001882
Ensembl Acc Id: ENSHGLP00000001835   ⟸   ENSHGLT00000001881


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001397 Ensembl, ENTREZGENE
  ENSHGLG00100019324 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001880 ENTREZGENE
  ENSHGLT00000001881 ENTREZGENE
  ENSHGLT00000001882 ENTREZGENE
  ENSHGLT00100026612 UniProtKB/TrEMBL
InterPro Tachy_Neuro_lke_CS UniProtKB/TrEMBL
  Tachykinin_dom UniProtKB/TrEMBL
  Tachykinin_fam UniProtKB/TrEMBL
KEGG Report hgl:101703449 UniProtKB/TrEMBL
NCBI Gene Tac1 ENTREZGENE
PANTHER PROTACHYKININ-1 UniProtKB/TrEMBL
  TACHYKININ UniProtKB/TrEMBL
Pfam Tachykinin UniProtKB/TrEMBL
PRINTS PROTACHYKNIN UniProtKB/TrEMBL
PROSITE TACHYKININ UniProtKB/TrEMBL
SMART SM00203 UniProtKB/TrEMBL
UniProt A0A0P6JY17 ENTREZGENE, UniProtKB/TrEMBL