TAC1 (tachykinin precursor 1) - Rat Genome Database

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Gene: TAC1 (tachykinin precursor 1) Sus scrofa
Analyze
Symbol: TAC1
Name: tachykinin precursor 1 (Ensembl:tachykinin 1)
RGD ID: 14171449
Description: ENCODES a protein that exhibits neuromedin K receptor binding (ortholog); receptor ligand activity (ortholog); substance K receptor binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); associative learning (ortholog); cellular response to nerve growth factor stimulus (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); allergic disease (ortholog); amnestic disorder (ortholog); FOUND IN extracellular space (ortholog); neuronal dense core vesicle (ortholog); INTERACTS WITH acrylamide; bisphenol A; capsaicin
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protachykinin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl977,197,536 - 77,206,523 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1977,197,403 - 77,206,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2984,764,564 - 84,773,747 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:24155273   PMID:24713103  


Genomics

Comparative Map Data
TAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl977,197,536 - 77,206,523 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1977,197,403 - 77,206,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2984,764,564 - 84,773,747 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38797,732,086 - 97,740,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl797,732,084 - 97,740,472 (+)EnsemblGRCh38hg38GRCh38
GRCh37797,361,398 - 97,369,784 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36797,199,311 - 97,207,720 (+)NCBINCBI36Build 36hg18NCBI36
Build 34797,006,025 - 97,014,433NCBI
Celera792,055,970 - 92,064,483 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef791,962,648 - 91,971,157 (+)NCBIHuRef
CHM1_1797,291,306 - 97,299,818 (+)NCBICHM1_1
T2T-CHM13v2.0798,961,638 - 98,970,024 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2796,683,759 - 96,692,272 (+)NCBI
Tac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3967,555,061 - 7,562,978 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl67,554,879 - 7,565,834 (+)EnsemblGRCm39 Ensembl
GRCm3867,555,061 - 7,562,978 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl67,554,879 - 7,565,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv3767,505,071 - 7,512,973 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3667,505,071 - 7,512,973 (+)NCBIMGSCv36mm8
Celera67,693,231 - 7,701,130 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map63.31NCBI
Tac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8436,645,344 - 36,653,548 (+)NCBIGRCr8
mRatBN7.2435,679,183 - 35,687,180 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl435,679,704 - 35,687,178 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx440,638,023 - 40,645,989 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0436,564,213 - 36,572,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0434,981,526 - 34,989,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0433,638,853 - 33,646,819 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl433,638,709 - 33,646,819 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0433,499,891 - 33,507,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4432,649,666 - 32,657,632 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1432,768,205 - 32,776,170 (+)NCBI
Celera431,183,136 - 31,191,779 (+)NCBICelera
Cytogenetic Map4q21NCBI
Tac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543213,991,414 - 13,999,728 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543213,991,647 - 13,999,665 (+)NCBIChiLan1.0ChiLan1.0
TAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26115,561,721 - 115,570,273 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17163,826,347 - 163,834,906 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0789,675,834 - 89,684,391 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17103,257,450 - 103,266,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7103,257,501 - 103,266,389 (+)Ensemblpanpan1.1panPan2
TAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11422,631,106 - 22,640,283 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1422,632,642 - 22,640,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1422,207,754 - 22,215,926 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01422,451,048 - 22,459,223 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11422,597,269 - 22,605,445 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01422,330,414 - 22,338,555 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01422,594,017 - 22,602,196 (+)NCBIUU_Cfam_GSD_1.0
Tac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511835,921,952 - 35,930,508 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365852,932,727 - 2,941,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365852,932,783 - 2,941,141 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12151,339,085 - 51,347,561 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2151,339,095 - 51,347,550 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604253,024,229 - 53,032,700 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248134,542,011 - 4,550,486 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248134,542,226 - 4,550,378 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAC1
202 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
10 21 3 2 7 3 21 1 4

Sequence


Ensembl Acc Id: ENSSSCT00000027581   ⟹   ENSSSCP00000020239
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl977,197,639 - 77,206,519 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000037660   ⟹   ENSSSCP00000031562
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl977,197,536 - 77,206,523 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000048830   ⟹   ENSSSCP00000038049
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl977,197,587 - 77,206,523 (+)Ensembl
RefSeq Acc Id: XM_003130163   ⟹   XP_003130211
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1977,197,420 - 77,206,529 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003130164   ⟹   XP_003130212
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1977,197,409 - 77,206,529 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003357447   ⟹   XP_003357495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1977,197,420 - 77,206,529 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667633   ⟹   XP_005667690
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1977,197,403 - 77,206,529 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013979715   ⟹   XP_013835169
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1977,197,704 - 77,206,529 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005667690   ⟸   XM_005667633
- Peptide Label: isoform X3
- UniProtKB: A0A286ZJ61 (UniProtKB/TrEMBL),   A0A4X1TSP2 (UniProtKB/TrEMBL),   A0A8D0WK79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003130212   ⟸   XM_003130164
- Peptide Label: isoform X1
- UniProtKB: A0A287A283 (UniProtKB/TrEMBL),   A0A4X1TPS0 (UniProtKB/TrEMBL),   A0A8D0K2W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003130211   ⟸   XM_003130163
- Peptide Label: isoform X2
- UniProtKB: I3L881 (UniProtKB/TrEMBL),   A0A4X1TSN8 (UniProtKB/TrEMBL),   A0A8D1LKF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003357495   ⟸   XM_003357447
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013835169   ⟸   XM_013979715
- Peptide Label: isoform X1
- UniProtKB: A0A287A283 (UniProtKB/TrEMBL),   A0A4X1TPS0 (UniProtKB/TrEMBL),   A0A8D0K2W3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000038049   ⟸   ENSSSCT00000048830
Ensembl Acc Id: ENSSSCP00000020239   ⟸   ENSSSCT00000027581
Ensembl Acc Id: ENSSSCP00000031562   ⟸   ENSSSCT00000037660
Protein Domains
Tachykinin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023592 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005034408 UniProtKB/TrEMBL
  ENSSSCG00015008939 UniProtKB/TrEMBL
  ENSSSCG00025043411 UniProtKB/TrEMBL
  ENSSSCG00030034978 UniProtKB/TrEMBL
  ENSSSCG00035075443 UniProtKB/TrEMBL
  ENSSSCG00040012829 UniProtKB/TrEMBL
  ENSSSCG00045000311 UniProtKB/TrEMBL
  ENSSSCG00050017158 UniProtKB/TrEMBL
  ENSSSCG00055028472 UniProtKB/TrEMBL
  ENSSSCG00060026754 UniProtKB/TrEMBL
  ENSSSCG00065037786 UniProtKB/TrEMBL
  ENSSSCG00070011292 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027581 ENTREZGENE
  ENSSSCT00000027581.3 UniProtKB/TrEMBL
  ENSSSCT00000037660 ENTREZGENE
  ENSSSCT00000037660.3 UniProtKB/TrEMBL
  ENSSSCT00000048830 ENTREZGENE
  ENSSSCT00000048830.3 UniProtKB/TrEMBL
  ENSSSCT00005054993.1 UniProtKB/TrEMBL
  ENSSSCT00005055007.1 UniProtKB/TrEMBL
  ENSSSCT00005055037.1 UniProtKB/TrEMBL
  ENSSSCT00015011792.1 UniProtKB/TrEMBL
  ENSSSCT00015011869.1 UniProtKB/TrEMBL
  ENSSSCT00015011953.1 UniProtKB/TrEMBL
  ENSSSCT00025058859.1 UniProtKB/TrEMBL
  ENSSSCT00025058949.1 UniProtKB/TrEMBL
  ENSSSCT00025059053.1 UniProtKB/TrEMBL
  ENSSSCT00030048463.1 UniProtKB/TrEMBL
  ENSSSCT00030048480.1 UniProtKB/TrEMBL
  ENSSSCT00030048516.1 UniProtKB/TrEMBL
  ENSSSCT00035102536.1 UniProtKB/TrEMBL
  ENSSSCT00035102556.1 UniProtKB/TrEMBL
  ENSSSCT00035102563.1 UniProtKB/TrEMBL
  ENSSSCT00040016987.1 UniProtKB/TrEMBL
  ENSSSCT00040017020.1 UniProtKB/TrEMBL
  ENSSSCT00040017050.1 UniProtKB/TrEMBL
  ENSSSCT00045000387.1 UniProtKB/TrEMBL
  ENSSSCT00045000393.1 UniProtKB/TrEMBL
  ENSSSCT00045000412.1 UniProtKB/TrEMBL
  ENSSSCT00050023355.1 UniProtKB/TrEMBL
  ENSSSCT00050023377.1 UniProtKB/TrEMBL
  ENSSSCT00050023392.1 UniProtKB/TrEMBL
  ENSSSCT00055056427.1 UniProtKB/TrEMBL
  ENSSSCT00055056472.1 UniProtKB/TrEMBL
  ENSSSCT00055056509.1 UniProtKB/TrEMBL
  ENSSSCT00060036219.1 UniProtKB/TrEMBL
  ENSSSCT00060036223.1 UniProtKB/TrEMBL
  ENSSSCT00060036226.1 UniProtKB/TrEMBL
  ENSSSCT00065051613.1 UniProtKB/TrEMBL
  ENSSSCT00065051615.1 UniProtKB/TrEMBL
  ENSSSCT00065051618.1 UniProtKB/TrEMBL
  ENSSSCT00070021996.1 UniProtKB/TrEMBL
  ENSSSCT00070022003.1 UniProtKB/TrEMBL
  ENSSSCT00070022008.1 UniProtKB/TrEMBL
InterPro Tachy_Neuro_lke_CS UniProtKB/TrEMBL
  Tachykinin_dom UniProtKB/TrEMBL
  Tachykinin_fam UniProtKB/TrEMBL
KEGG Report ssc:100525179 UniProtKB/TrEMBL
NCBI Gene TAC1 ENTREZGENE
PANTHER PROTACHYKININ-1 UniProtKB/TrEMBL
  TACHYKININ UniProtKB/TrEMBL
Pfam Tachykinin UniProtKB/TrEMBL
PRINTS PROTACHYKNIN UniProtKB/TrEMBL
PROSITE TACHYKININ UniProtKB/TrEMBL
SMART SM00203 UniProtKB/TrEMBL
UniProt A0A286ZJ61 ENTREZGENE
  A0A287A283 ENTREZGENE
  A0A4X1TPS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TSN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TSP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K2W3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WK79 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LKF7 ENTREZGENE, UniProtKB/TrEMBL
  I3L881 ENTREZGENE
  Q2A136_PIG UniProtKB/TrEMBL
UniProt Secondary A0A286ZJ61 UniProtKB/TrEMBL
  A0A287A283 UniProtKB/TrEMBL
  I3L881 UniProtKB/TrEMBL
VGNC ID VGNC:93697 ENTREZGENE