Kcnn2 (potassium calcium-activated channel subfamily N member 2) - Rat Genome Database

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Gene: Kcnn2 (potassium calcium-activated channel subfamily N member 2) Heterocephalus glaber
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Symbol: Kcnn2
Name: potassium calcium-activated channel subfamily N member 2
RGD ID: 18908090
Description: ENCODES a protein that exhibits alpha-actinin binding (ortholog); calcium-activated potassium channel activity (ortholog); calmodulin binding (ortholog); INVOLVED IN membrane repolarization during atrial cardiac muscle cell action potential (ortholog); modulation of chemical synaptic transmission (ortholog); positive regulation of potassium ion transport (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); cardiac arrest (ortholog); FOUND IN cell surface (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2; Small conductance calcium-activated potassium channel protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247337,429,681 - 7,578,596 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247337,429,681 - 7,931,192 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcnn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247337,429,681 - 7,578,596 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247337,429,681 - 7,931,192 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KCNN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385114,055,978 - 114,496,496 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5114,055,926 - 114,496,500 (+)EnsemblGRCh38hg38GRCh38
GRCh375113,391,675 - 113,832,193 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365113,725,915 - 113,860,096 (+)NCBINCBI36Build 36hg18NCBI36
Build 345113,797,125 - 113,860,096NCBI
Celera5109,645,171 - 109,779,247 (+)NCBICelera
Cytogenetic Map5q22.3NCBI
HuRef5108,880,682 - 109,014,440 (+)NCBIHuRef
CHM1_15113,130,747 - 113,264,917 (+)NCBICHM1_1
T2T-CHM13v2.05114,568,913 - 115,009,369 (+)NCBIT2T-CHM13v2.0
Kcnn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391845,401,754 - 45,818,954 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1845,401,927 - 45,818,950 (+)EnsemblGRCm39 Ensembl
GRCm381845,268,750 - 45,685,887 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1845,268,860 - 45,686,024 (+)EnsemblGRCm38mm10GRCm38
MGSCv371845,719,808 - 45,845,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361845,685,485 - 45,811,214 (+)NCBIMGSCv36mm8
Celera1846,932,460 - 47,057,444 (+)NCBICelera
Cytogenetic Map18B3- CNCBI
cM Map1824.34NCBI
Kcnn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81840,004,693 - 40,445,043 (+)NCBIGRCr8
mRatBN7.21837,817,966 - 38,258,347 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1837,817,957 - 38,258,347 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1840,147,538 - 40,291,656 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01840,849,776 - 40,993,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01838,642,870 - 38,786,982 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01839,331,894 - 39,479,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1839,335,377 - 39,479,257 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01838,822,146 - 38,864,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41839,560,962 - 39,705,037 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1836,394,877 - 36,538,795 (+)NCBICelera
Cytogenetic Map18q11NCBI
Kcnn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540834,109,334 - 34,368,114 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540834,223,523 - 34,366,191 (+)NCBIChiLan1.0ChiLan1.0
KCNN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24108,932,344 - 109,759,429 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15107,774,104 - 107,913,089 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05109,722,916 - 109,862,747 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15115,522,363 - 115,661,398 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5115,522,443 - 115,661,079 (+)Ensemblpanpan1.1panPan2
KCNN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,279,362 - 4,423,080 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,154,746 - 4,423,078 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha114,114,348 - 4,574,043 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0114,259,813 - 4,403,473 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl114,258,999 - 4,403,890 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,914,674 - 4,366,142 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,295,183 - 4,439,054 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0114,237,744 - 4,692,269 (+)NCBIUU_Cfam_GSD_1.0
Kcnn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213127,017,453 - 127,153,054 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004937043133,981 - 269,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2118,439,403 - 118,882,295 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12118,439,328 - 118,882,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22123,463,548 - 123,612,813 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12317,595,661 - 17,735,675 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2317,598,177 - 17,735,669 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603460,665,455 - 60,803,805 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021238367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01007914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01007942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH172843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000007305   ⟹   ENSHGLP00000007220
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247337,429,681 - 7,578,596 (-)Ensembl
RefSeq Acc Id: XM_021238367   ⟹   XP_021094026
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247337,429,681 - 7,931,192 (-)NCBI
RefSeq Acc Id: XM_021238373   ⟹   XP_021094032
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247337,429,996 - 7,931,192 (-)NCBI
RefSeq Acc Id: XM_021238384   ⟹   XP_021094043
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247337,430,097 - 7,931,192 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021094026 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094032 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094043 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15398 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007220
RefSeq Acc Id: XP_021094026   ⟸   XM_021238367
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021094032   ⟸   XM_021238373
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021094043   ⟸   XM_021238384
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000007220   ⟸   ENSHGLT00000007305


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005256 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007305 ENTREZGENE
NCBI Gene Kcnn2 ENTREZGENE