Kcnn2 (potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2) - Rat Genome Database

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Gene: Kcnn2 (potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2) Mus musculus
Analyze
Symbol: Kcnn2
Name: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
RGD ID: 734126
MGI Page MGI
Description: Enables small conductance calcium-activated potassium channel activity. Involved in membrane repolarization during atrial cardiac muscle cell action potential and potassium ion transmembrane transport. Acts upstream of or within ion transport. Located in several cellular components, including T-tubule; Z disc; and smooth endoplasmic reticulum. Is expressed in brain; heart; and heart ventricle. Used to study Parkinson's disease. Orthologous to human KCNN2 (potassium calcium-activated channel subfamily N member 2); PARTICIPATES IN calcium/calcium-mediated signaling pathway; bile acid transport pathway; INTERACTS WITH 3,3',4,4'-tetrachlorobiphenyl; 4-hydroxyphenyl retinamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: bc; bouncy; f; fri; KCa2.2; SK; SK2; SKCa 2; SKCA2; small conductance calcium-activated potassium channel 2; small conductance calcium-activated potassium channel protein 2; small conductance calcium-activated potassium channel subfamily N member 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391845,401,754 - 45,818,954 (+)NCBIGRCm39mm39
GRCm39 Ensembl1845,401,927 - 45,819,091 (+)Ensembl
GRCm381845,268,750 - 45,685,887 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1845,268,860 - 45,686,024 (+)EnsemblGRCm38mm10GRCm38
MGSCv371845,719,808 - 45,845,537 (+)NCBIGRCm37mm9NCBIm37
MGSCv361845,685,485 - 45,811,214 (+)NCBImm8
Celera1846,932,460 - 47,057,444 (+)NCBICelera
Cytogenetic Map18B3- CNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(-)-demecolcine  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
amitriptyline  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
celastrol  (ISO)
chlorpromazine  (ISO)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
cyproheptadine  (ISO)
cytarabine  (ISO)
D-glucose  (EXP)
dequalinium  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
etoposide  (ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
furan  (ISO)
gedunin  (ISO)
glucose  (EXP)
imipramine  (ISO)
indole-3-methanol  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
monosodium L-glutamate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-nitrosodiethylamine  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium dichromate  (ISO)
streptozocin  (EXP)
sunitinib  (ISO)
tacrine  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thallium  (ISO)
thioacetamide  (ISO)
trifluoperazine  (ISO)
tubocurarine  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:6949984   PMID:8176201   PMID:8182278   PMID:8889548   PMID:10349636   PMID:10988076   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11442353   PMID:11557517   PMID:12477932  
PMID:12882916   PMID:13679367   PMID:14657188   PMID:15190101   PMID:15234350   PMID:15782199   PMID:15797870   PMID:16055520   PMID:16141072   PMID:16141073   PMID:16467533   PMID:16985003  
PMID:17110593   PMID:17267753   PMID:17347645   PMID:17396235   PMID:17627990   PMID:18096820   PMID:18204442   PMID:18353877   PMID:18385475   PMID:18488023   PMID:18604572   PMID:18624921  
PMID:18818242   PMID:18848895   PMID:19139040   PMID:19815520   PMID:20235171   PMID:20553876   PMID:20689065   PMID:20810893   PMID:21602822   PMID:21712833   PMID:21873635   PMID:22072564  
PMID:22554781   PMID:22794265   PMID:23035101   PMID:23129791   PMID:23392350   PMID:23426693   PMID:23430260   PMID:23650376   PMID:23735878   PMID:24122766   PMID:24951510   PMID:24952961  
PMID:25355231   PMID:25605734   PMID:25798587   PMID:25917818   PMID:26166566   PMID:26454020   PMID:26880549   PMID:26972012   PMID:27874831   PMID:28175299   PMID:28282037   PMID:29055091  
PMID:30635400   PMID:31905212   PMID:32005752   PMID:32555345   PMID:33029124  


Genomics

Comparative Map Data
Kcnn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391845,401,754 - 45,818,954 (+)NCBIGRCm39mm39
GRCm39 Ensembl1845,401,927 - 45,819,091 (+)Ensembl
GRCm381845,268,750 - 45,685,887 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1845,268,860 - 45,686,024 (+)EnsemblGRCm38mm10GRCm38
MGSCv371845,719,808 - 45,845,537 (+)NCBIGRCm37mm9NCBIm37
MGSCv361845,685,485 - 45,811,214 (+)NCBImm8
Celera1846,932,460 - 47,057,444 (+)NCBICelera
Cytogenetic Map18B3- CNCBI
KCNN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5114,055,926 - 114,496,500 (+)EnsemblGRCh38hg38GRCh38
GRCh385114,055,978 - 114,496,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375113,391,675 - 113,832,193 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365113,725,915 - 113,860,096 (+)NCBINCBI36hg18NCBI36
Build 345113,797,125 - 113,860,096NCBI
Celera5109,645,171 - 109,779,247 (+)NCBI
Cytogenetic Map5q22.3NCBI
HuRef5108,880,682 - 109,014,440 (+)NCBIHuRef
CHM1_15113,130,747 - 113,264,917 (+)NCBICHM1_1
Kcnn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21837,817,966 - 38,258,347 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1837,817,957 - 38,258,347 (+)Ensembl
Rnor_6.01839,331,894 - 39,479,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1839,335,377 - 39,479,257 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01838,822,146 - 38,864,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41839,560,962 - 39,705,037 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1836,394,877 - 36,538,795 (+)NCBICelera
Cytogenetic Map18q11NCBI
Kcnn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540834,109,334 - 34,368,114 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540834,223,523 - 34,366,191 (+)NCBIChiLan1.0ChiLan1.0
KCNN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15115,522,363 - 115,661,398 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5115,522,443 - 115,661,079 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05109,722,916 - 109,862,747 (+)NCBIMhudiblu_PPA_v0panPan3
KCNN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,279,362 - 4,423,080 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,154,746 - 4,423,078 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha114,114,348 - 4,574,043 (+)NCBI
ROS_Cfam_1.0114,259,813 - 4,403,473 (+)NCBI
UMICH_Zoey_3.1113,914,674 - 4,366,142 (+)NCBI
UNSW_CanFamBas_1.0114,295,183 - 4,439,054 (+)NCBI
UU_Cfam_GSD_1.0114,237,744 - 4,692,269 (+)NCBI
Kcnn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213127,017,453 - 127,153,054 (+)NCBI
SpeTri2.0NW_004937043133,981 - 269,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2118,439,403 - 118,882,296 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12118,439,328 - 118,882,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22123,463,548 - 123,612,813 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12317,595,661 - 17,735,675 (+)NCBI
ChlSab1.1 Ensembl2317,598,177 - 17,735,669 (+)Ensembl
Vero_WHO_p1.0NW_02366603460,665,455 - 60,803,805 (-)NCBI
Kcnn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247337,429,681 - 7,931,192 (-)NCBI

Position Markers
AU043608  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381845,684,293 - 45,684,401UniSTSGRCm38
MGSCv371845,843,947 - 45,844,055UniSTSGRCm37
Celera1847,055,854 - 47,055,962UniSTS
Cytogenetic Map18CUniSTS
Whitehead/MRC_RH18696.56UniSTS
UniSTS:237799  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381845,592,390 - 45,592,669UniSTSGRCm38
MGSCv371845,752,044 - 45,752,323UniSTSGRCm37
Celera1846,964,672 - 46,964,951UniSTS
Cytogenetic Map18CUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060800000Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961139571Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181350407347504073Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181389696666965891Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181606658750066723Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181800665152006806Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181888582152885939Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181888582152885939Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182082063757457636Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182108452755084674Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182248686156487074Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182248686156487074Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182248686156487074Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182248686156487074Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182248686156487074Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182398250757982677Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182476282478296340Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182592381059923810Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182710806258694005Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182710806258694005Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182710806258694005Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182797631361976451Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2799753761997672Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182953484763534993Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183010000064100000Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183185541365855562Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183295797666958154Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183552556069525779Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183615795070158108Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183807349772073497Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183807349772073497Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183807349772073497Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183807349772073497Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183897060572970721Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183948686184620653Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184317804877178271Mouse
10412262Gre1_mGlucocorticoid receptor expression 1 (mouse)Not determined184340801346403932Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184499753768645706Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:488
Count of miRNA genes:300
Interacting mature miRNAs:333
Transcripts:ENSMUST00000066890, ENSMUST00000167895, ENSMUST00000169783, ENSMUST00000183623, ENSMUST00000183850, ENSMUST00000183897, ENSMUST00000184101
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001312905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_080465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC101593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF357240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF533008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY123778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY280964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY718608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY741994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU478850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000066890   ⟹   ENSMUSP00000067884
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,402,072 - 45,819,091 (+)Ensembl
GRCm38.p6 Ensembl1845,269,005 - 45,686,024 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167895
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,693,221 - 45,808,429 (+)Ensembl
GRCm38.p6 Ensembl1845,560,154 - 45,675,362 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169783   ⟹   ENSMUSP00000129659
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,693,221 - 45,818,949 (+)Ensembl
GRCm38.p6 Ensembl1845,560,154 - 45,685,882 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183623
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,401,927 - 45,422,891 (+)Ensembl
GRCm38.p6 Ensembl1845,268,860 - 45,289,824 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183850   ⟹   ENSMUSP00000139350
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,402,072 - 45,818,950 (+)Ensembl
GRCm38.p6 Ensembl1845,269,005 - 45,685,883 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183897
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,692,878 - 45,726,132 (+)Ensembl
GRCm38.p6 Ensembl1845,559,811 - 45,593,065 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184101
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,692,536 - 45,804,316 (+)Ensembl
GRCm38.p6 Ensembl1845,559,469 - 45,671,249 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211323   ⟹   ENSMUSP00000148153
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,693,221 - 45,818,629 (+)Ensembl
GRCm38.p6 Ensembl1845,560,154 - 45,685,562 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235217
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,707,687 - 45,725,401 (+)Ensembl
GRCm38.p6 Ensembl1845,574,620 - 45,592,334 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236405   ⟹   ENSMUSP00000158371
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1845,788,320 - 45,818,462 (+)Ensembl
GRCm38.p6 Ensembl1845,655,253 - 45,685,395 (+)Ensembl
RefSeq Acc Id: NM_001312905   ⟹   NP_001299834
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391845,401,926 - 45,818,950 (+)NCBI
GRCm381845,268,859 - 45,685,883 (+)NCBI
Sequence:
RefSeq Acc Id: NM_080465   ⟹   NP_536713
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391845,693,221 - 45,818,950 (+)NCBI
GRCm381845,560,154 - 45,685,883 (+)NCBI
MGSCv371845,719,808 - 45,845,537 (+)RGD
Celera1846,932,460 - 47,057,444 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030250331   ⟹   XP_030106191
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391845,401,836 - 45,818,952 (+)NCBI
GRCm381845,268,750 - 45,685,887 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160982   ⟹   XP_036016875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391845,401,754 - 45,818,952 (+)NCBI
RefSeq Acc Id: XM_036160983   ⟹   XP_036016876
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391845,769,222 - 45,818,952 (+)NCBI
RefSeq Acc Id: XR_004939835
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391845,691,476 - 45,818,954 (+)NCBI
RefSeq Acc Id: XR_004939836
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391845,691,476 - 45,818,954 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_536713   ⟸   NM_080465
- Peptide Label: isoform SK2-S
- UniProtKB: P58390 (UniProtKB/Swiss-Prot),   A0A1B0GT12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001299834   ⟸   NM_001312905
- Peptide Label: isoform SK2-L
- UniProtKB: P58390 (UniProtKB/Swiss-Prot),   B4YDY0 (UniProtKB/TrEMBL),   Q8C7F3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030106191   ⟸   XM_030250331
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000067884   ⟸   ENSMUST00000066890
RefSeq Acc Id: ENSMUSP00000139350   ⟸   ENSMUST00000183850
RefSeq Acc Id: ENSMUSP00000158371   ⟸   ENSMUST00000236405
RefSeq Acc Id: ENSMUSP00000148153   ⟸   ENSMUST00000211323
RefSeq Acc Id: ENSMUSP00000129659   ⟸   ENSMUST00000169783
RefSeq Acc Id: XP_036016875   ⟸   XM_036160982
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016876   ⟸   XM_036160983
- Peptide Label: isoform X3
Protein Domains
CaMBD   Ion_trans_2

Promoters
RGD ID:13677726
Promoter ID:EPDNEW_M23012
Type:initiation region
Name:Kcnn2_1
Description:Mus musculus potassium intermediate/small conductance calcium-activatedchannel, subfamily N, member 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23013  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381845,268,859 - 45,268,919EPDNEW
RGD ID:13677728
Promoter ID:EPDNEW_M23013
Type:single initiation site
Name:Kcnn2_2
Description:Mus musculus potassium intermediate/small conductance calcium-activatedchannel, subfamily N, member 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23012  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381845,467,792 - 45,467,852EPDNEW
RGD ID:6829318
Promoter ID:MM_KWN:25203
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000066890
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361845,717,966 - 45,718,466 (+)MPROMDB
RGD ID:6829330
Promoter ID:MM_KWN:25204
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:LINCRNA_511,   UC008EVE.1,   UC008EVF.1,   UC008EVG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361845,718,266 - 45,719,217 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2153182 AgrOrtholog
Ensembl Genes ENSMUSG00000054477 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000067884 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000129659 UniProtKB/TrEMBL
  ENSMUSP00000139350 UniProtKB/TrEMBL
  ENSMUSP00000148153 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000158371 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000066890 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000169783 UniProtKB/TrEMBL
  ENSMUST00000183850 UniProtKB/TrEMBL
  ENSMUST00000211323 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000236405 UniProtKB/TrEMBL
InterPro CaM-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CaM-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_Ca-activ_SK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:140492 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2153182 ENTREZGENE
NCBI Gene 140492 ENTREZGENE
PANTHER PTHR10153 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CaMBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SK_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kcnn2 PhenoGen
PRINTS SKCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CaMBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81327 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GT12 ENTREZGENE, UniProtKB/TrEMBL
  A0A494BB53_MOUSE UniProtKB/TrEMBL
  B4YDY0 ENTREZGENE, UniProtKB/TrEMBL
  KCNN2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80X11_MOUSE UniProtKB/TrEMBL
  Q8C7F3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9QNY5 UniProtKB/Swiss-Prot
  Q3UF29 UniProtKB/Swiss-Prot
  Q540U9 UniProtKB/Swiss-Prot
  Q8CCH4 UniProtKB/Swiss-Prot