HSD11B2 (hydroxysteroid 11-beta dehydrogenase 2) - Rat Genome Database

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Gene: HSD11B2 (hydroxysteroid 11-beta dehydrogenase 2) Chlorocebus sabaeus
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Symbol: HSD11B2
Name: hydroxysteroid 11-beta dehydrogenase 2
RGD ID: 18751783
Description: ENCODES a protein that exhibits NAD binding (ortholog); steroid binding (ortholog); INVOLVED IN female pregnancy (ortholog); glucocorticoid metabolic process (ortholog); regulation of blood volume by renal aldosterone (ortholog); PARTICIPATES IN 11-beta-hydroxylase deficiency pathway; 17-alpha-hydroxylase deficiency pathway; 21-alpha-hydroxylase deficiency pathway; ASSOCIATED WITH apparent mineralocorticoid excess syndrome (ortholog); asthma (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: corticosteroid 11-beta-dehydrogenase isozyme 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,017,967 - 60,040,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,019,434 - 60,025,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,768,265 - 22,774,736 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
HSD11B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,017,967 - 60,040,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,019,434 - 60,025,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,768,265 - 22,774,736 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HSD11B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,429,801 - 67,437,553 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,430,652 - 67,437,553 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,465,024 - 67,471,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,022,537 - 66,028,957 (+)NCBINCBI36Build 36hg18NCBI36
Build 341666,022,536 - 66,028,953NCBI
Celera1651,973,237 - 51,979,660 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,338,306 - 53,344,605 (+)NCBIHuRef
CHM1_11668,872,417 - 68,878,837 (+)NCBICHM1_1
T2T-CHM13v2.01673,225,897 - 73,232,329 (+)NCBIT2T-CHM13v2.0
Hsd11b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,245,378 - 106,250,620 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,245,387 - 106,250,620 (+)EnsemblGRCm39 Ensembl
GRCm388105,518,746 - 105,523,988 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,518,755 - 105,523,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,042,646 - 108,047,888 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,407,983 - 108,412,647 (+)NCBIMGSCv36mm8
Celera8109,741,823 - 109,747,238 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Hsd11b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,307,569 - 50,312,812 (+)NCBIGRCr8
mRatBN7.21933,397,656 - 33,402,899 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,397,656 - 33,402,899 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,213,241 - 40,218,484 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,866,577 - 40,871,820 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,164,244 - 43,169,492 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,476,083 - 37,481,326 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,476,095 - 37,481,307 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,341,841 - 48,347,084 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,336,342 - 35,341,585 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,341,222 - 35,346,466 (+)NCBI
Celera1932,826,007 - 32,831,250 (+)NCBICelera
Cytogenetic Map19q12NCBI
Hsd11b2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,206,681 - 9,212,356 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,206,681 - 9,212,356 (-)NCBIChiLan1.0ChiLan1.0
HSD11B2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,960,361 - 76,967,114 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,873,017 - 82,880,656 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,776,118 - 47,782,861 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,150,354 - 67,171,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,165,215 - 67,171,417 (+)Ensemblpanpan1.1panPan2
HSD11B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,966,397 - 81,970,301 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,966,937 - 81,968,991 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,956,062 - 81,961,586 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,401,695 - 82,407,218 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,402,235 - 82,407,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,227,839 - 82,233,361 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,908,941 - 81,914,465 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,552,387 - 82,557,914 (-)NCBIUU_Cfam_GSD_1.0
Hsd11b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,700,829 - 41,706,486 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,882,575 - 17,887,748 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,882,663 - 17,888,708 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSD11B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,083,955 - 28,089,671 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,084,087 - 28,089,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,351,178 - 25,356,346 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Hsd11b2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,883,353 - 18,889,402 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,883,587 - 18,889,205 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
75 36 19 35 35 59 20

Sequence


Ensembl Acc Id: ENSCSAT00000001928   ⟹   ENSCSAP00000000263
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl560,019,434 - 60,025,353 (-)Ensembl
RefSeq Acc Id: XM_007993965   ⟹   XP_007992156
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1560,017,971 - 60,025,343 (-)NCBI
Vero_WHO_p1.0NW_02366604722,768,265 - 22,774,736 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007992156 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000263
  ENSCSAP00000000263.1
RefSeq Acc Id: XP_007992156   ⟸   XM_007993965
- UniProtKB: A0A0D9QV74 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000000263   ⟸   ENSCSAT00000001928


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001928.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
KEGG Report csab:103233278 UniProtKB/TrEMBL
NCBI Gene HSD11B2 ENTREZGENE
PANTHER CORTICOSTEROID 11-BETA-DEHYDROGENASE ISOZYME 2 UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A0D9QV74 ENTREZGENE, UniProtKB/TrEMBL