FAH (fumarylacetoacetate hydrolase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: FAH (fumarylacetoacetate hydrolase) Chlorocebus sabaeus
Analyze
Symbol: FAH
Name: fumarylacetoacetate hydrolase
RGD ID: 18659795
Description: ENCODES a protein that exhibits fumarylacetoacetase activity (inferred); hydrolase activity (inferred); metal ion binding (inferred); INVOLVED IN arginine catabolic process (ortholog); PARTICIPATES IN alkaptonuria pathway; disulfiram pharmacodynamics pathway; dopamine beta-hydroxylase deficiency pathway; ASSOCIATED WITH beta-mannosidosis (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fumarylacetoacetase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1263,223,327 - 3,259,367 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl263,223,079 - 3,258,657 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048138,616,632 - 138,652,526 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FAH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1263,223,327 - 3,259,367 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl263,223,079 - 3,258,657 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048138,616,632 - 138,652,526 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FAH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381580,152,789 - 80,186,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1580,152,490 - 80,186,946 (+)EnsemblGRCh38hg38GRCh38
GRCh371580,445,131 - 80,479,291 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361578,232,396 - 78,265,737 (+)NCBINCBI36Build 36hg18NCBI36
Build 341578,232,395 - 78,265,737NCBI
Celera1557,382,789 - 57,416,130 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1557,208,400 - 57,236,922 (+)NCBIHuRef
CHM1_11580,563,191 - 80,596,880 (+)NCBICHM1_1
T2T-CHM13v2.01578,016,209 - 78,050,378 (+)NCBIT2T-CHM13v2.0
Fah
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39784,234,367 - 84,255,150 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl784,234,367 - 84,255,930 (-)EnsemblGRCm39 Ensembl
GRCm38784,585,159 - 84,605,942 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl784,585,159 - 84,606,722 (-)EnsemblGRCm38mm10GRCm38
MGSCv37791,733,669 - 91,754,452 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36784,461,355 - 84,481,937 (-)NCBIMGSCv36mm8
Celera781,987,620 - 82,008,470 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map748.36NCBI
Fah
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,957,931 - 147,980,708 (-)NCBIGRCr8
mRatBN7.21138,548,830 - 138,571,599 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1138,548,834 - 138,571,505 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1146,501,260 - 146,524,074 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01153,670,263 - 153,693,077 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01146,545,471 - 146,568,281 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01146,713,663 - 146,736,339 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,713,676 - 146,736,261 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,640,316 - 147,662,920 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,851,975 - 140,876,187 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,930,382 - 140,954,593 (-)NCBI
Celera1130,566,888 - 130,589,532 (-)NCBICelera
Cytogenetic Map1q31NCBI
Fah
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955533904,295 - 921,730 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955533904,294 - 921,730 (+)NCBIChiLan1.0ChiLan1.0
FAH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21669,406,972 - 69,440,591 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11573,571,710 - 73,605,514 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01559,121,657 - 59,155,229 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11578,081,523 - 78,115,169 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1578,048,571 - 78,115,098 (+)Ensemblpanpan1.1panPan2
FAH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,300,422 - 57,326,546 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,300,441 - 57,326,486 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha359,958,877 - 59,985,019 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,726,930 - 57,753,060 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,702,957 - 57,753,270 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,232,805 - 57,258,945 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,439,515 - 57,465,634 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,786,369 - 57,812,502 (-)NCBIUU_Cfam_GSD_1.0
Fah
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,292,223 - 120,326,410 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647138,140,273 - 38,174,702 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647138,140,324 - 38,174,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl749,047,902 - 49,087,783 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1749,047,833 - 49,087,790 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2754,556,153 - 54,596,338 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fah
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249411,039,429 - 1,056,568 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249411,039,389 - 1,056,568 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000013168   ⟹   ENSCSAP00000011171
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl263,223,079 - 3,258,657 (-)Ensembl
RefSeq Acc Id: XM_008015666   ⟹   XP_008013857
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1263,223,327 - 3,258,600 (-)NCBI
Vero_WHO_p1.0NW_023666048138,617,513 - 138,652,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008015667   ⟹   XP_008013858
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1263,223,327 - 3,258,599 (-)NCBI
Vero_WHO_p1.0NW_023666048138,617,515 - 138,652,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008015668   ⟹   XP_008013859
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1263,223,327 - 3,258,487 (-)NCBI
Vero_WHO_p1.0NW_023666048138,617,646 - 138,652,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008015669   ⟹   XP_008013860
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1263,223,327 - 3,259,367 (-)NCBI
Vero_WHO_p1.0NW_023666048138,616,632 - 138,652,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008015670   ⟹   XP_008013861
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1263,223,327 - 3,258,605 (-)NCBI
Vero_WHO_p1.0NW_023666048138,617,528 - 138,652,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008015671   ⟹   XP_008013862
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1263,223,327 - 3,258,598 (-)NCBI
Vero_WHO_p1.0NW_023666048138,617,511 - 138,652,526 (+)NCBI
Sequence:
RefSeq Acc Id: XP_008013860   ⟸   XM_008015669
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RRD2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013861   ⟸   XM_008015670
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RRD2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013857   ⟸   XM_008015666
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RRD2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013858   ⟸   XM_008015667
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RRD2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013862   ⟸   XM_008015671
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RRD2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013859   ⟸   XM_008015668
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RRD2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000011171   ⟸   ENSCSAT00000013168


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015069 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013168.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.230 UniProtKB/TrEMBL
  3.90.850.10 UniProtKB/TrEMBL
InterPro Fumarylacetoacetase UniProtKB/TrEMBL
  Fumarylacetoacetase-like_C UniProtKB/TrEMBL
  Fumarylacetoacetase_C_sf UniProtKB/TrEMBL
  Fumarylacetoacetase_N UniProtKB/TrEMBL
  Fumarylacetoacetase_N_sf UniProtKB/TrEMBL
KEGG Report csab:103245223 UniProtKB/TrEMBL
NCBI Gene FAH ENTREZGENE
PANTHER FUMARYLACETOACETASE UniProtKB/TrEMBL
  PTHR43069 UniProtKB/TrEMBL
Pfam FAA_hydrolase UniProtKB/TrEMBL
  FAA_hydrolase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56529 UniProtKB/TrEMBL
  SSF63433 UniProtKB/TrEMBL
UniProt A0A0D9RRD2 ENTREZGENE, UniProtKB/TrEMBL