DNAJC5 (DnaJ heat shock protein family (Hsp40) member C5) - Rat Genome Database

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Gene: DNAJC5 (DnaJ heat shock protein family (Hsp40) member C5) Chlorocebus sabaeus
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Symbol: DNAJC5
Name: DnaJ heat shock protein family (Hsp40) member C5
RGD ID: 18622607
Description: ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); INVOLVED IN chaperone-mediated protein folding (inferred); negative regulation of neuron apoptotic process (inferred); neuron apoptotic process (inferred); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dnaJ homolog subfamily C member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12303,195 - 310,618 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2307,988 - 310,475 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,836,851 - 47,872,106 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 12 of 12 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DNAJC5Green Monkeyautosomal dominant nocturnal frontal lobe epilepsy  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal dominant nocturnal frontal lobe epilepsyClinVarPMID:24811917 more ...
DNAJC5Green Monkeybenign familial infantile seizures 6  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal dominant nocturnal frontal lobe epilepsyClinVarPMID:24811917 more ...
DNAJC5Green Monkeydevelopmental and epileptic encephalopathy  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:14534157 more ...
DNAJC5Green Monkeydevelopmental and epileptic encephalopathy 33  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathy more ...ClinVarPMID:24811917 more ...
DNAJC5Green Monkeyearly infantile epileptic encephalopathy  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:14534157 more ...
DNAJC5Green Monkeyepilepsy  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: SeizuresClinVarPMID:25741868 more ...
DNAJC5Green Monkeygenetic disease  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
DNAJC5Green Monkeyneuronal ceroid lipofuscinosis  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosisClinVarPMID:14534157 more ...
DNAJC5Green Monkeyneuronal ceroid lipofuscinosis  ISODNAJC5 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17576681 more ...
DNAJC5Green Monkeyneuronal ceroid lipofuscinosis 4  ISODNAJC5 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11489285 more ...
DNAJC5Green Monkeyprogressive myoclonus epilepsy  ISODNAJC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Neuronal Ceroid-Lipofuscinosis and RecessiveClinVarPMID:25741868 more ...
DNAJC5Green Monkeyvisual epilepsy  ISODNAJC5 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
1 to 12 of 12 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DNAJC5Green Monkeyneuronal ceroid lipofuscinosis 4  ISODNAJC5 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DNAJC5Green Monkeychaperone-mediated protein folding involved_inIEAPANTHER:PTN002375760150520179 TreeGrafterGO_REF:0000118
DNAJC5Green Monkeychaperone-mediated protein folding involved_inIEAUniProtKB:P60904 and ensembl:ENSMUSP00000072175150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeynegative regulation of neuron apoptotic process acts_upstream_of_or_withinIEAUniProtKB:P60904 and ensembl:ENSMUSP00000072175150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeyneuron apoptotic process acts_upstream_ofIEAUniProtKB:P60904 and ensembl:ENSMUSP00000072175150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeyregulation of synaptic vesicle cycle involved_inIEAUniProtKB:P60904 and ensembl:ENSMUSP00000072175150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeyregulation of synaptic vesicle cycle involved_inIEAPANTHER:PTN002375760150520179 TreeGrafterGO_REF:0000118

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DNAJC5Green Monkeychromaffin granule membrane located_inIEAUniProtKB-SubCell:SL-0062150520179 UniProtGO_REF:0000044
DNAJC5Green Monkeycytoplasm located_inIEAARBA:ARBA00026971150520179 UniProtGO_REF:0000117
DNAJC5Green Monkeycytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
DNAJC5Green Monkeycytosol located_inIEAUniProtKB-SubCell:SL-0091150520179 UniProtGO_REF:0000044
DNAJC5Green Monkeyintracellular membrane-bounded organelle located_inIEAPANTHER:PTN002375760150520179 TreeGrafterGO_REF:0000118
DNAJC5Green Monkeymelanosome located_inIEAUniProtKB-SubCell:SL-0161150520179 UniProtGO_REF:0000044
DNAJC5Green Monkeymembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
DNAJC5Green Monkeymembrane located_inIEAPANTHER:PTN002375760150520179 TreeGrafterGO_REF:0000118
DNAJC5Green Monkeyneuromuscular junction is_active_inIEAUniProtKB:P60904 and ensembl:ENSMUSP00000072175150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeyplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
DNAJC5Green Monkeyplasma membrane located_inIEAUniProtKB:Q9H3Z4 and ensembl:ENSP00000354111150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeypresynapse located_inIEAPANTHER:PTN002375760150520179 TreeGrafterGO_REF:0000118
DNAJC5Green Monkeypresynapse is_active_inIEAUniProtKB:P60904 and ensembl:ENSMUSP00000072175150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeysynaptic vesicle located_inIEAUniProtKB:P60904 and ensembl:ENSMUSP00000072175150520179 EnsemblGO_REF:0000107
DNAJC5Green Monkeysynaptic vesicle membrane is_active_inISODnajc5 (Rattus norvegicus)9068941PMID:11580898SynGOPMID:11580898 and REF_RGD_ID:13702369
DNAJC5Green Monkeysynaptic vesicle membrane is_active_inISODnajc5 (Rattus norvegicus)9068941PMID:7535880SynGOPMID:7535880 and REF_RGD_ID:632551
1 to 16 of 16 rows

Molecular Function

  

PMID:30032202  



DNAJC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12303,195 - 310,618 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2307,988 - 310,475 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,836,851 - 47,872,106 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DNAJC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,895,126 - 63,936,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,895,126 - 63,936,031 (+)EnsemblGRCh38hg38GRCh38
GRCh372062,526,479 - 62,567,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,996,962 - 62,035,839 (+)NCBINCBI36Build 36hg18NCBI36
Build 342061,996,961 - 62,035,838NCBI
Celera2059,210,381 - 59,249,259 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,258,875 - 59,300,772 (+)NCBIHuRef
CHM1_12062,427,271 - 62,467,998 (+)NCBICHM1_1
T2T-CHM13v2.02065,714,973 - 65,755,860 (+)NCBIT2T-CHM13v2.0
Dnajc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,162,141 - 181,194,679 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,162,278 - 181,196,926 (+)EnsemblGRCm39 Ensembl
GRCm382181,518,858 - 181,552,886 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,520,485 - 181,555,133 (+)EnsemblGRCm38mm10GRCm38
MGSCv372181,255,210 - 181,286,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,449,912 - 181,481,656 (+)NCBIMGSCv36mm8
Celera2185,601,949 - 185,633,720 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.63NCBI
Dnajc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,999,508 - 189,033,455 (+)NCBIGRCr8
mRatBN7.23168,621,905 - 168,656,570 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,621,969 - 168,655,935 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3173,002,718 - 173,032,873 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,961,813 - 181,991,968 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,623,311 - 178,653,609 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03177,012,714 - 177,047,787 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,013,604 - 177,043,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,723,449 - 180,758,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,655,557 - 170,685,855 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13170,561,592 - 170,591,891 (+)NCBI
Celera3163,934,331 - 163,964,588 (-)NCBICelera
Cytogenetic Map3q43NCBI
Dnajc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528317,891 - 366,293 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528317,891 - 366,299 (-)NCBIChiLan1.0ChiLan1.0
DNAJC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,707,007 - 69,748,067 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,699,028 - 69,740,072 (+)NCBINHGRI_mPanPan1
PanPan1.12061,848,236 - 61,856,265 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,848,236 - 61,856,265 (+)Ensemblpanpan1.1panPan2
DNAJC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.02448,520,496 - 48,548,620 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2448,514,370 - 48,545,332 (+)EnsemblROS_Cfam_1.0 Ensembl
Dnajc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,630,910 - 195,685,765 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,131,074 - 11,139,446 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651411,131,666 - 11,139,404 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,754,802 - 62,780,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,754,630 - 62,780,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Dnajc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,515,298 - 29,562,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,515,338 - 29,562,619 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in DNAJC5
208 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20



Ensembl Acc Id: ENSCSAT00000014755   ⟹   ENSCSAP00000012717
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2307,988 - 310,475 (-)Ensembl
RefSeq Acc Id: XM_037983045   ⟹   XP_037838973
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605047,836,851 - 47,872,103 (-)NCBI
RefSeq Acc Id: XR_005235006
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605047,836,851 - 47,872,106 (-)NCBI
Protein RefSeqs XP_037838973 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012717.1
Ensembl Acc Id: ENSCSAP00000012717   ⟸   ENSCSAT00000014755
RefSeq Acc Id: XP_037838973   ⟸   XM_037983045



1 to 17 of 17 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000016656 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014755.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
InterPro DnaJ_C_subfamily_member5 UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
NCBI Gene DNAJC5 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 5 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
UniProt A0A0D9RVS8_CHLSB UniProtKB/TrEMBL
1 to 17 of 17 rows