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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | neuronal ceroid lipofuscinosis 4B | | ISO | RGD:1344057 | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | neuronal ceroid lipofuscinosis 4B | | ISO | RGD:1344057 | 7240710 | | OMIM | | |
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1. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
2. | Ko MS, etal., Development 2000 Apr;127(8):1737-49. |
3. | MGD data from the GO Consortium |
4. | MGD IEA |
5. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
6. | OMIM Disease Annotation Pipeline |
7. | Pipeline to import KEGG annotations from KEGG into RGD |
8. | RGD automated import pipeline |
9. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
10. | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:9257949 | PMID:10349636 | PMID:10501973 | PMID:10512203 | PMID:10544143 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11147971 | PMID:12477932 | PMID:12520002 |
PMID:12904583 | PMID:14610273 | PMID:15091340 | PMID:15572359 | PMID:15782199 | PMID:15840001 | PMID:16141072 | PMID:16141073 | PMID:16269331 | PMID:16407767 | PMID:16477021 | PMID:16602821 |
PMID:17114649 | PMID:17208939 | PMID:18554416 | PMID:18596047 | PMID:18598257 | PMID:18799693 | PMID:19242542 | PMID:20505105 | PMID:20798282 | PMID:20847230 | PMID:21151134 | PMID:21267068 |
PMID:21677750 | PMID:22187053 | PMID:22500636 | PMID:22500637 | PMID:22896677 | PMID:23129765 | PMID:23604909 | PMID:23945775 | PMID:24036317 | PMID:24190036 | PMID:24475152 | PMID:25253725 |
PMID:27261198 | PMID:27480124 | PMID:27881461 | PMID:28424476 | PMID:30926666 | PMID:32042150 | PMID:32325033 |
Dnajc5 (Mus musculus - house mouse) |
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DNAJC5 (Homo sapiens - human) |
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Dnajc5 (Rattus norvegicus - Norway rat) |
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Dnajc5 (Chinchilla lanigera - long-tailed chinchilla) |
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DNAJC5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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DNAJC5 (Canis lupus familiaris - dog) |
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Dnajc5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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DNAJC5 (Sus scrofa - pig) |
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DNAJC5 (Chlorocebus sabaeus - African green monkey) |
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Dnajc5 (Heterocephalus glaber - naked mole-rat) |
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AW742687 |
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RH136216 |
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AU041474 |
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UniSTS:234632 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_001271584 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001271585 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_016775 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_073369 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011239923 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036157985 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_003950402 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_004938013 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_004938017 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_867108 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AF032115 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK007879 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK012029 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK029006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK032373 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK035288 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK083584 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK135001 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK179639 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK181062 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK209609 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK211685 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK216674 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK218605 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK219962 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL929094 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC012268 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC018231 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC024465 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY101584 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY333630 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CB249513 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466626 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CN459638 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000072334 ⟹ ENSMUSP00000072175 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000108796 ⟹ ENSMUSP00000104424 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000108797 ⟹ ENSMUSP00000104425 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000116365 ⟹ ENSMUSP00000112066 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000141523 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000152578 ⟹ ENSMUSP00000116120 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001271584 ⟹ NP_001258513 | ||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001271585 ⟹ NP_001258514 | ||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_016775 ⟹ NP_058055 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_073369 | ||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||
Type: | NON-CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011239923 ⟹ XP_011238225 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036157985 ⟹ XP_036013878 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_003950402 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XR_004938013 | ||||||||
RefSeq Status: | |||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_004938017 | ||||||||
RefSeq Status: | |||||||||
Type: | NON-CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_867108 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001258513 | (Get FASTA) | NCBI Sequence Viewer |
NP_001258514 | (Get FASTA) | NCBI Sequence Viewer | |
NP_058055 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011238225 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036013878 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAB87080 | (Get FASTA) | NCBI Sequence Viewer |
AAH12268 | (Get FASTA) | NCBI Sequence Viewer | |
AAH24465 | (Get FASTA) | NCBI Sequence Viewer | |
BAC26236 | (Get FASTA) | NCBI Sequence Viewer | |
BAC27841 | (Get FASTA) | NCBI Sequence Viewer | |
EDL07424 | (Get FASTA) | NCBI Sequence Viewer | |
EDL07425 | (Get FASTA) | NCBI Sequence Viewer | |
EDL07426 | (Get FASTA) | NCBI Sequence Viewer | |
P60904 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_058055 ⟸ NM_016775 |
- UniProtKB: | P60904 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001258513 ⟸ NM_001271584 |
- UniProtKB: | P60904 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001258514 ⟸ NM_001271585 |
- UniProtKB: | P60904 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_011238225 ⟸ XM_011239923 |
- Peptide Label: | isoform X1 |
- UniProtKB: | P60904 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000116120 ⟸ ENSMUST00000152578 |
RefSeq Acc Id: | ENSMUSP00000072175 ⟸ ENSMUST00000072334 |
RefSeq Acc Id: | ENSMUSP00000104424 ⟸ ENSMUST00000108796 |
RefSeq Acc Id: | ENSMUSP00000104425 ⟸ ENSMUST00000108797 |
RefSeq Acc Id: | ENSMUSP00000112066 ⟸ ENSMUST00000116365 |
RefSeq Acc Id: | XP_036013878 ⟸ XM_036157985 |
- Peptide Label: | isoform X1 |
RGD ID: | 6831178 | ||||||||
Promoter ID: | MM_KWN:33636 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000108796, ENSMUST00000108798, OTTMUST00000040585, OTTMUST00000040589, UC008OMQ.1, UC008OMR.1 | ||||||||
Position: |
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RGD ID: | 6831179 | ||||||||
Promoter ID: | MM_KWN:33637 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_4Hour, Brain, Kidney, Lung | ||||||||
Transcripts: | OTTMUST00000040590 | ||||||||
Position: |
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RGD ID: | 6880142 | ||||||||
Promoter ID: | EPDNEW_M3521 | ||||||||
Type: | initiation region | ||||||||
Name: | Dnajc5_1 | ||||||||
Description: | Mus musculus DnaJ heat shock protein family member C5 , transcriptvariant 3, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M3522 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6880144 | ||||||||
Promoter ID: | EPDNEW_M3522 | ||||||||
Type: | initiation region | ||||||||
Name: | Dnajc5_2 | ||||||||
Description: | Mus musculus DnaJ heat shock protein family member C5 , transcriptvariant 3, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M3521 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:892995 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000000826 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSMUSP00000072175 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUSP00000104424 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSMUSP00000104425 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSMUSP00000112066 | UniProtKB/TrEMBL | |
ENSMUSP00000116120 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSMUST00000072334 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUST00000108796 | UniProtKB/Swiss-Prot | |
ENSMUST00000108797 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSMUST00000116365 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUST00000152578 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.287.110 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | DnaJ_domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
DnaJ_domain_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
J_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:13002 | UniProtKB/Swiss-Prot |
MGD | MGI:892995 | ENTREZGENE |
NCBI Gene | 13002 | ENTREZGENE |
Pfam | DnaJ | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Dnajc5 | PhenoGen |
PRINTS | JDOMAIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | DNAJ_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
DNAJ_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | DnaJ | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF46565 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A2AUE1_MOUSE | UniProtKB/TrEMBL |
DNJC5_MOUSE | UniProtKB/Swiss-Prot | |
G5E8T0_MOUSE | UniProtKB/TrEMBL | |
P60904 | ENTREZGENE | |
Q8K1C3_MOUSE | UniProtKB/TrEMBL | |
Q921J3_MOUSE | UniProtKB/TrEMBL | |
UniProt Secondary | P54101 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2015-12-22 | Dnajc5 | DnaJ heat shock protein family (Hsp40) member C5 | DnaJ (Hsp40) homolog, subfamily C, member 5 | Symbol and/or name change | 5135510 | APPROVED |