Dnajc5 (DnaJ heat shock protein family (Hsp40) member C5) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Dnajc5 (DnaJ heat shock protein family (Hsp40) member C5) Mus musculus
Analyze
Symbol: Dnajc5
Name: DnaJ heat shock protein family (Hsp40) member C5
RGD ID: 731705
MGI Page MGI
Description: Predicted to have ATP-dependent protein binding activity. Involved in chaperone-mediated protein folding; negative regulation of neuron apoptotic process; and regulation of synaptic vesicle cycle. Localizes to neuromuscular junction and synaptic vesicle. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 4B. Orthologous to human DNAJC5 (DnaJ heat shock protein family (Hsp40) member C5); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2610314I24Rik; AU018536; C; Csp; cysteine string protein; cysteine-string protein isoform alpha; DnaJ (Hsp40) homolog, subfamily C, member 5; dnaJ homolog subfamily C member 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,162,141 - 181,194,679 (+)NCBIGRCm39mm39
GRCm39 Ensembl2181,162,278 - 181,196,926 (+)Ensembl
GRCm382181,518,858 - 181,552,886 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,520,485 - 181,555,133 (+)EnsemblGRCm38mm10GRCm38
MGSCv372181,255,210 - 181,286,954 (+)NCBIGRCm37mm9NCBIm37
MGSCv362181,449,912 - 181,481,656 (+)NCBImm8
Celera2185,601,949 - 185,633,720 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9257949   PMID:10349636   PMID:10501973   PMID:10512203   PMID:10544143   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11147971   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14610273   PMID:15091340   PMID:15572359   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16269331   PMID:16407767   PMID:16477021   PMID:16602821  
PMID:17114649   PMID:17208939   PMID:18554416   PMID:18596047   PMID:18598257   PMID:18799693   PMID:19242542   PMID:20505105   PMID:20798282   PMID:20847230   PMID:21151134   PMID:21267068  
PMID:21677750   PMID:22187053   PMID:22500636   PMID:22500637   PMID:22896677   PMID:23129765   PMID:23604909   PMID:23945775   PMID:24036317   PMID:24190036   PMID:24475152   PMID:25253725  
PMID:27261198   PMID:27480124   PMID:27881461   PMID:28424476   PMID:30926666   PMID:32042150   PMID:32325033  


Genomics

Comparative Map Data
Dnajc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,162,141 - 181,194,679 (+)NCBIGRCm39mm39
GRCm39 Ensembl2181,162,278 - 181,196,926 (+)Ensembl
GRCm382181,518,858 - 181,552,886 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,520,485 - 181,555,133 (+)EnsemblGRCm38mm10GRCm38
MGSCv372181,255,210 - 181,286,954 (+)NCBIGRCm37mm9NCBIm37
MGSCv362181,449,912 - 181,481,656 (+)NCBImm8
Celera2185,601,949 - 185,633,720 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.63NCBI
DNAJC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2063,895,126 - 63,936,031 (+)EnsemblGRCh38hg38GRCh38
GRCh382063,895,126 - 63,936,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372062,526,479 - 62,567,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,996,962 - 62,035,839 (+)NCBINCBI36hg18NCBI36
Build 342061,996,961 - 62,035,838NCBI
Celera2059,210,381 - 59,249,259 (+)NCBI
Cytogenetic Map20q13.33NCBI
HuRef2059,258,875 - 59,300,772 (+)NCBIHuRef
CHM1_12062,427,271 - 62,467,998 (+)NCBICHM1_1
Dnajc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23168,621,905 - 168,656,570 (+)NCBI
Rnor_6.0 Ensembl3177,013,604 - 177,043,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03177,012,714 - 177,047,787 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03180,723,449 - 180,758,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,655,557 - 170,685,855 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13170,561,592 - 170,591,891 (+)NCBI
Celera3163,934,331 - 163,964,588 (-)NCBICelera
Cytogenetic Map3q43NCBI
Dnajc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528317,891 - 366,293 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528317,891 - 366,299 (-)NCBIChiLan1.0ChiLan1.0
DNAJC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12061,848,236 - 61,856,265 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,848,236 - 61,856,265 (+)Ensemblpanpan1.1panPan2
DNAJC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.02448,520,496 - 48,548,620 (+)NCBI
Dnajc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,630,910 - 195,685,765 (+)NCBI
SpeTri2.0NW_00493651411,131,666 - 11,139,404 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,773,940 - 62,777,311 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,754,630 - 62,780,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNAJC5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12303,195 - 310,618 (-)NCBI
ChlSab1.1 Ensembl2307,988 - 310,475 (-)Ensembl
Dnajc5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474129,515,338 - 29,562,619 (+)NCBI

Position Markers
AW742687  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382181,552,829 - 181,553,077UniSTSGRCm38
MGSCv372181,287,534 - 181,287,782UniSTSGRCm37
Celera2185,634,300 - 185,634,548UniSTS
Cytogenetic Map2H4UniSTS
cM Map2106.0UniSTS
Whitehead/MRC_RH22023.44UniSTS
RH136216  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382181,551,930 - 181,552,128UniSTSGRCm38
MGSCv372181,286,635 - 181,286,833UniSTSGRCm37
Celera2185,633,401 - 185,633,599UniSTS
Cytogenetic Map2H4UniSTS
cM Map2106.0UniSTS
AU041474  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382181,533,682 - 181,533,786UniSTSGRCm38
MGSCv372181,268,387 - 181,268,491UniSTSGRCm37
Celera2185,615,160 - 185,615,264UniSTS
Cytogenetic Map2H4UniSTS
cM Map2106.0UniSTS
Whitehead/MRC_RH22022.0UniSTS
UniSTS:234632  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382181,533,729 - 181,533,972UniSTSGRCm38
MGSCv372181,268,434 - 181,268,677UniSTSGRCm37
Celera2185,615,207 - 185,615,450UniSTS
Cytogenetic Map2H4UniSTS
cM Map2106.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155982127182113224Mouse
1558748Vacq1_mvoluntary alcohol consumption QTL 1 (mouse)Not determined2178800545181873487Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162791700182113224Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163844614182113224Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150370301182113224Mouse
12738428Lfibq19_mliver fibrosis QTL 19 (mouse)2181090877181807525Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2150146982182113224Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148396284182113224Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151936377182113224Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152487900182113224Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150370301182113224Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148822973182113224Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164873361182113224Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150370301182113224Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149394987182113224Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156354671182113224Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163844614182113224Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5537
Count of miRNA genes:897
Interacting mature miRNAs:1292
Transcripts:ENSMUST00000072334, ENSMUST00000108796, ENSMUST00000108797, ENSMUST00000116365, ENSMUST00000141523, ENSMUST00000152578
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_867108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF032115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY101584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY333630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB249513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN459638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000072334   ⟹   ENSMUSP00000072175
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2181,520,485 - 181,555,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108796   ⟹   ENSMUSP00000104424
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2181,520,947 - 181,549,590 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108797   ⟹   ENSMUSP00000104425
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2181,520,551 - 181,552,232 (+)Ensembl
RefSeq Acc Id: ENSMUST00000116365   ⟹   ENSMUSP00000112066
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2181,520,526 - 181,552,249 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2181,549,326 - 181,550,258 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152578   ⟹   ENSMUSP00000116120
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2181,520,812 - 181,548,772 (+)Ensembl
RefSeq Acc Id: NM_001271584   ⟹   NP_001258513
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,162,278 - 181,194,673 (+)NCBI
GRCm382181,520,485 - 181,552,880 (+)NCBI
Celera2185,601,929 - 185,634,351 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271585   ⟹   NP_001258514
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,162,278 - 181,194,673 (+)NCBI
GRCm382181,520,485 - 181,552,880 (+)NCBI
Celera2185,601,929 - 185,634,351 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016775   ⟹   NP_058055
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,162,278 - 181,194,673 (+)NCBI
GRCm382181,520,485 - 181,552,880 (+)NCBI
MGSCv372181,255,210 - 181,286,954 (+)RGD
Celera2185,601,929 - 185,634,351 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_073369
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,162,278 - 181,194,673 (+)NCBI
GRCm382181,520,485 - 181,552,880 (+)NCBI
Celera2185,601,929 - 185,634,351 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239923   ⟹   XP_011238225
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,162,586 - 181,194,679 (+)NCBI
GRCm382181,520,790 - 181,552,886 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157985   ⟹   XP_036013878
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,182,263 - 181,194,679 (+)NCBI
RefSeq Acc Id: XR_003950402
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,182,269 - 181,194,677 (+)NCBI
GRCm382181,540,537 - 181,552,886 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938013
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,162,278 - 181,194,677 (+)NCBI
RefSeq Acc Id: XR_004938017
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,182,269 - 181,194,679 (+)NCBI
RefSeq Acc Id: XR_867108
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392181,162,141 - 181,194,677 (+)NCBI
GRCm382181,518,858 - 181,552,886 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058055   ⟸   NM_016775
- UniProtKB: P60904 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258513   ⟸   NM_001271584
- UniProtKB: P60904 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258514   ⟸   NM_001271585
- UniProtKB: P60904 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011238225   ⟸   XM_011239923
- Peptide Label: isoform X1
- UniProtKB: P60904 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000116120   ⟸   ENSMUST00000152578
RefSeq Acc Id: ENSMUSP00000072175   ⟸   ENSMUST00000072334
RefSeq Acc Id: ENSMUSP00000104424   ⟸   ENSMUST00000108796
RefSeq Acc Id: ENSMUSP00000104425   ⟸   ENSMUST00000108797
RefSeq Acc Id: ENSMUSP00000112066   ⟸   ENSMUST00000116365
RefSeq Acc Id: XP_036013878   ⟸   XM_036157985
- Peptide Label: isoform X1
Protein Domains
J

Promoters
RGD ID:6831178
Promoter ID:MM_KWN:33636
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108796,   ENSMUST00000108798,   OTTMUST00000040585,   OTTMUST00000040589,   UC008OMQ.1,   UC008OMR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362181,254,831 - 181,255,331 (+)MPROMDB
RGD ID:6831179
Promoter ID:MM_KWN:33637
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000040590
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362181,283,456 - 181,284,487 (+)MPROMDB
RGD ID:6880142
Promoter ID:EPDNEW_M3521
Type:initiation region
Name:Dnajc5_1
Description:Mus musculus DnaJ heat shock protein family member C5 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3522  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382181,520,551 - 181,520,611EPDNEW
RGD ID:6880144
Promoter ID:EPDNEW_M3522
Type:initiation region
Name:Dnajc5_2
Description:Mus musculus DnaJ heat shock protein family member C5 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3521  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382181,521,842 - 181,521,902EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:892995 AgrOrtholog
Ensembl Genes ENSMUSG00000000826 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000072175 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104424 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104425 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112066 UniProtKB/TrEMBL
  ENSMUSP00000116120 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072334 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108796 UniProtKB/Swiss-Prot
  ENSMUST00000108797 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000116365 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000152578 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  J_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13002 UniProtKB/Swiss-Prot
MGD MGI:892995 ENTREZGENE
NCBI Gene 13002 ENTREZGENE
Pfam DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dnajc5 PhenoGen
PRINTS JDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AUE1_MOUSE UniProtKB/TrEMBL
  DNJC5_MOUSE UniProtKB/Swiss-Prot
  G5E8T0_MOUSE UniProtKB/TrEMBL
  P60904 ENTREZGENE
  Q8K1C3_MOUSE UniProtKB/TrEMBL
  Q921J3_MOUSE UniProtKB/TrEMBL
UniProt Secondary P54101 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Dnajc5  DnaJ heat shock protein family (Hsp40) member C5    DnaJ (Hsp40) homolog, subfamily C, member 5  Symbol and/or name change 5135510 APPROVED