SYNJ2 (synaptojanin 2) - Rat Genome Database

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Gene: SYNJ2 (synaptojanin 2) Chlorocebus sabaeus
Analyze
Symbol: SYNJ2
Name: synaptojanin 2
RGD ID: 18559302
Description: ENCODES a protein that exhibits inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity (ortholog); inositol-1,4,5-trisphosphate 5-phosphatase activity (ortholog); phosphatidylinositol monophosphate phosphatase activity (ortholog); INVOLVED IN inositol phosphate catabolic process (ortholog); phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); Meniere's disease (ortholog); FOUND IN axon terminus (ortholog); cytoplasmic microtubule (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptojanin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11385,579,457 - 85,695,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1385,580,392 - 85,692,908 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604057,949,365 - 58,065,977 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SYNJ2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11385,579,457 - 85,695,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1385,580,392 - 85,692,908 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604057,949,365 - 58,065,977 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SYNJ2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386157,981,296 - 158,099,176 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6157,981,863 - 158,099,176 (+)EnsemblGRCh38hg38GRCh38
GRCh376158,402,895 - 158,520,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,322,907 - 158,439,556 (+)NCBINCBI36Build 36hg18NCBI36
Build 346158,373,327 - 158,489,977NCBI
Celera6159,051,752 - 159,169,058 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6155,875,294 - 155,992,255 (+)NCBIHuRef
CHM1_16158,665,133 - 158,782,434 (+)NCBICHM1_1
T2T-CHM13v2.06159,227,492 - 159,345,318 (+)NCBIT2T-CHM13v2.0
Synj2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,991,555 - 6,106,041 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,991,555 - 6,094,565 (+)EnsemblGRCm39 Ensembl
GRCm38175,941,280 - 6,055,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,941,280 - 6,044,290 (+)EnsemblGRCm38mm10GRCm38
MGSCv37175,941,280 - 6,044,290 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,932,123 - 6,000,772 (+)NCBIMGSCv36mm8
Celera176,513,365 - 6,582,071 (+)NCBICelera
Cytogenetic Map17A1NCBI
cM Map173.59NCBI
Synj2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8148,923,742 - 49,027,153 (+)NCBIGRCr8
mRatBN7.2146,518,594 - 46,621,919 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,518,709 - 46,633,687 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,069,005 - 47,165,022 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,056,255 - 53,152,284 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,144,430 - 47,240,455 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,835,922 - 46,932,544 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,835,971 - 46,932,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,140,566 - 48,236,043 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4140,763,794 - 40,818,491 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1140,766,738 - 40,821,418 (+)NCBI
Celera142,211,492 - 42,305,219 (+)NCBICelera
Cytogenetic Map1q11NCBI
Synj2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554394,290,238 - 4,400,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554394,305,630 - 4,400,775 (-)NCBIChiLan1.0ChiLan1.0
SYNJ2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,095,787 - 178,228,422 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16175,999,205 - 176,128,735 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06155,881,818 - 156,011,416 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16157,940,846 - 158,058,462 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6157,940,179 - 158,055,662 (+)Ensemblpanpan1.1panPan2
SYNJ2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,506,925 - 47,582,353 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,483,942 - 47,579,831 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha148,327,920 - 48,426,329 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,669,938 - 47,768,899 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,669,793 - 47,771,015 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,548,877 - 47,647,228 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,418,371 - 47,516,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,977,352 - 48,075,852 (+)NCBIUU_Cfam_GSD_1.0
Synj2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946142,595,865 - 142,659,959 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364899,848,062 - 9,908,760 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364899,848,070 - 9,911,952 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNJ2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl19,014,551 - 9,109,103 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.119,014,206 - 9,109,050 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2111,136,293 - 11,232,123 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Synj2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624785145,228 - 266,022 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624785157,455 - 265,926 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000011116   ⟹   ENSCSAP00000009199
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1385,580,392 - 85,692,908 (+)Ensembl
RefSeq Acc Id: XM_008007693   ⟹   XP_008005884
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11385,580,253 - 85,695,694 (+)NCBI
Vero_WHO_p1.0NW_02366604057,950,033 - 58,065,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008007694   ⟹   XP_008005885
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11385,580,253 - 85,693,760 (+)NCBI
Vero_WHO_p1.0NW_02366604057,950,033 - 58,065,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008007697   ⟹   XP_008005888
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11385,579,457 - 85,695,694 (+)NCBI
Vero_WHO_p1.0NW_02366604057,949,365 - 58,065,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008007698   ⟹   XP_008005889
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11385,580,252 - 85,692,246 (+)NCBI
Vero_WHO_p1.0NW_02366604057,950,033 - 58,062,522 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038001142   ⟹   XP_037857070
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604057,994,710 - 58,065,977 (+)NCBI
RefSeq Acc Id: XM_038001143   ⟹   XP_037857071
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604057,994,232 - 58,065,977 (+)NCBI
RefSeq Acc Id: XM_038001145   ⟹   XP_037857073
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604058,023,204 - 58,065,977 (+)NCBI
RefSeq Acc Id: XP_008005888   ⟸   XM_008007697
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RKR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008005889   ⟸   XM_008007698
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RKR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008005884   ⟸   XM_008007693
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RKR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008005885   ⟸   XM_008007694
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RKR0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000009199   ⟸   ENSCSAT00000011116
RefSeq Acc Id: XP_037857071   ⟸   XM_038001143
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RKR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037857070   ⟸   XM_038001142
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RKR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037857073   ⟸   XM_038001145
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RKR0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013130 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011116.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  3.60.10.10 UniProtKB/TrEMBL
InterPro DUF1866 UniProtKB/TrEMBL
  Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  IP5 UniProtKB/TrEMBL
  IPPc UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  SAC_dom UniProtKB/TrEMBL
  SYNJ2_RRM UniProtKB/TrEMBL
KEGG Report csab:103240794 UniProtKB/TrEMBL
NCBI Gene SYNJ2 ENTREZGENE
PANTHER INOSITOL 5-PHOSPHATASE UniProtKB/TrEMBL
  PTHR11200:SF148 UniProtKB/TrEMBL
Pfam DUF1866 UniProtKB/TrEMBL
  Exo_endo_phos2 UniProtKB/TrEMBL
  Syja_N UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
  SAC UniProtKB/TrEMBL
SMART DUF1866 UniProtKB/TrEMBL
  IPPc UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  SSF56219 UniProtKB/TrEMBL
UniProt A0A0D9RKR0 ENTREZGENE, UniProtKB/TrEMBL