MAGI2 (membrane associated guanylate kinase, WW and PDZ domain containing 2) - Rat Genome Database

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Gene: MAGI2 (membrane associated guanylate kinase, WW and PDZ domain containing 2) Chlorocebus sabaeus
Analyze
Symbol: MAGI2
Name: membrane associated guanylate kinase, WW and PDZ domain containing 2
RGD ID: 18538706
Description: ENCODES a protein that exhibits activin receptor binding (ortholog); beta-1 adrenergic receptor binding (ortholog); kinesin binding (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); clathrin-dependent endocytosis (ortholog); negative regulation of activin receptor signaling pathway (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); anxiety disorder (ortholog); Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); FOUND IN bicellular tight junction (ortholog); centriole (ortholog); ciliary base (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12169,460,345 - 70,916,684 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604233,007,517 - 34,474,279 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAGI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12169,460,345 - 70,916,684 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604233,007,517 - 34,474,279 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MAGI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38778,017,055 - 79,453,667 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl778,017,055 - 79,453,667 (-)EnsemblGRCh38hg38GRCh38
GRCh37777,646,372 - 79,082,983 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36777,484,310 - 78,920,826 (-)NCBINCBI36Build 36hg18NCBI36
Build 34777,291,048 - 78,727,541NCBI
Celera772,346,978 - 73,783,869 (-)NCBICelera
Cytogenetic Map7q21.11NCBI
HuRef772,249,405 - 73,685,020 (-)NCBIHuRef
CHM1_1777,576,560 - 79,013,089 (-)NCBICHM1_1
T2T-CHM13v2.0779,268,893 - 80,705,470 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2776,978,436 - 78,414,480 (-)NCBI
Magi2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39519,431,787 - 20,909,790 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl519,432,034 - 20,909,790 (+)EnsemblGRCm39 Ensembl
GRCm38519,219,387 - 20,704,792 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl519,227,036 - 20,704,792 (+)EnsemblGRCm38mm10GRCm38
MGSCv37518,732,864 - 20,210,610 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36518,738,799 - 20,216,616 (+)NCBIMGSCv36mm8
Celera516,180,595 - 17,665,978 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map58.6NCBI
Magi2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8415,278,518 - 16,762,427 (-)NCBIGRCr8
mRatBN7.2414,386,389 - 15,870,036 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,386,399 - 15,870,240 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx419,521,700 - 20,999,622 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0415,323,728 - 16,811,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0413,707,338 - 15,197,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0410,995,241 - 12,472,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,995,234 - 11,610,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0410,987,831 - 12,456,502 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.449,909,448 - 11,441,301 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1410,054,955 - 11,441,302 (-)NCBI
Celera49,948,183 - 11,419,535 (-)NCBICelera
Cytogenetic Map4q11NCBI
Magi2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554106,400,242 - 7,294,924 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554106,739,115 - 7,295,027 (+)NCBIChiLan1.0ChiLan1.0
MAGI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2695,878,453 - 97,322,027 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17144,143,091 - 145,586,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0769,943,704 - 71,395,176 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1783,759,307 - 84,511,987 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl783,758,512 - 84,760,872 (-)Ensemblpanpan1.1panPan2
MAGI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,973,058 - 19,098,785 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,918,928 - 18,930,059 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1817,565,936 - 18,971,443 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01818,307,564 - 19,031,590 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1818,283,692 - 19,747,053 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11818,054,185 - 19,371,256 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,997,659 - 18,302,395 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01818,251,940 - 19,581,985 (-)NCBIUU_Cfam_GSD_1.0
Magi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511860,250,078 - 60,938,785 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647921,373,746 - 21,920,214 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647921,373,917 - 22,062,498 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9100,847,013 - 102,170,004 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19100,846,693 - 102,171,199 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29112,312,166 - 112,574,012 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Magi2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473927,134,993 - 28,430,686 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473927,132,533 - 28,430,765 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007982406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007982420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038004353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007982418   ⟹   XP_007980609
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12169,460,348 - 70,913,924 (+)NCBI
Vero_WHO_p1.0NW_02366604233,010,157 - 34,474,279 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038004352   ⟹   XP_037860280
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604233,007,517 - 34,474,278 (-)NCBI
RefSeq Acc Id: XM_038004353   ⟹   XP_037860281
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604233,007,517 - 34,474,277 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007980609 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860280 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860281 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007980609   ⟸   XM_007982418
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037860280   ⟸   XM_038004352
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037860281   ⟸   XM_038004353
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene MAGI2 ENTREZGENE