CTNND1 (catenin delta 1) - Rat Genome Database

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Gene: CTNND1 (catenin delta 1) Chlorocebus sabaeus
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Symbol: CTNND1
Name: catenin delta 1
RGD ID: 18494059
Description: ENCODES a protein that exhibits beta-catenin binding (ortholog); cell adhesion molecule binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN cell adhesion (ortholog); cell-cell adhesion (ortholog); epithelial cell differentiation involved in salivary gland development (ortholog); PARTICIPATES IN E-cadherin signaling pathway; fibroblast growth factor signaling pathway; N-cadherin signaling pathway; ASSOCIATED WITH blepharocheilodontic syndrome 2 (ortholog); cleft lip (ortholog); COVID-19 (ortholog); FOUND IN apicolateral plasma membrane (ortholog); bicellular tight junction (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: catenin delta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,408,581 - 15,466,457 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,411,454 - 15,466,456 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CTNND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,408,581 - 15,466,457 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,411,454 - 15,466,456 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CTNND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,761,802 - 57,819,540 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,753,243 - 57,819,546 (+)EnsemblGRCh38hg38GRCh38
GRCh371157,529,274 - 57,587,012 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,285,810 - 57,343,228 (+)NCBINCBI36Build 36hg18NCBI36
Build 341157,285,844 - 57,343,226NCBI
Celera1154,886,498 - 54,943,699 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,877,613 - 53,935,179 (+)NCBIHuRef
CHM1_11157,396,253 - 57,453,671 (+)NCBICHM1_1
T2T-CHM13v2.01157,712,138 - 57,769,885 (+)NCBIT2T-CHM13v2.0
Ctnnd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,417,440 - 84,489,321 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,430,415 - 84,481,109 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl284,431,783 - 84,508,385 (-)EnsemblGRCm39 Ensembl
GRCm38284,587,096 - 84,658,977 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,600,071 - 84,650,765 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl284,601,439 - 84,678,041 (-)EnsemblGRCm38mm10GRCm38
MGSCv37284,440,938 - 84,490,897 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,401,622 - 84,451,512 (-)NCBIMGSCv36mm8
Celera286,195,656 - 86,245,817 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Ctnnd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,090,025 - 90,141,247 (-)NCBIGRCr8
mRatBN7.2369,683,328 - 69,734,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl369,683,313 - 69,734,516 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,065,626 - 73,116,086 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0381,664,290 - 81,714,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,423,182 - 79,473,649 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,001,904 - 72,053,047 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,002,152 - 72,053,049 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,522,817 - 78,573,692 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4367,809,603 - 67,860,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1367,705,435 - 67,756,536 (-)NCBI
Celera369,039,896 - 69,090,199 (-)NCBICelera
Cytogenetic Map3q24NCBI
Ctnnd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555112,658,858 - 2,703,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555112,658,879 - 2,705,992 (+)NCBIChiLan1.0ChiLan1.0
CTNND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,907,516 - 58,972,840 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,927,487 - 59,992,833 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01153,000,582 - 53,058,054 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,470,169 - 56,527,593 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,470,174 - 56,527,593 (+)Ensemblpanpan1.1panPan2
CTNND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,415,687 - 38,469,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,417,701 - 38,462,216 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1837,962,765 - 38,016,771 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,097,716 - 39,151,685 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1839,083,149 - 39,145,376 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11838,680,858 - 38,734,838 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,254,198 - 38,307,993 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01838,884,472 - 38,938,494 (-)NCBIUU_Cfam_GSD_1.0
Ctnnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494714,638,778 - 14,688,432 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365814,750,947 - 4,802,289 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365814,750,845 - 4,802,262 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl213,154,338 - 13,209,250 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1213,143,604 - 13,209,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,789,450 - 12,842,242 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ctnnd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248642,951,556 - 3,006,529 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248642,953,357 - 3,000,355 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007998017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007998136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037999288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037999289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037999290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037999291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037999292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037999293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000004044   ⟹   ENSCSAP00000002310
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl115,411,454 - 15,466,456 (-)Ensembl
RefSeq Acc Id: XM_007998037   ⟹   XP_007996228
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,408,581 - 15,466,427 (-)NCBI
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007998053   ⟹   XP_007996244
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,408,581 - 15,466,427 (-)NCBI
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007998063   ⟹   XP_007996254
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,408,581 - 15,466,427 (-)NCBI
Vero_WHO_p1.0NW_023666038112,762,236 - 112,817,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007998073   ⟹   XP_007996264
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,408,581 - 15,466,457 (-)NCBI
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007998082   ⟹   XP_007996273
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,408,581 - 15,466,457 (-)NCBI
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007998128   ⟹   XP_007996319
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,408,581 - 15,466,457 (-)NCBI
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007998136   ⟹   XP_007996327
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1115,408,581 - 15,466,457 (-)NCBI
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037999288   ⟹   XP_037855216
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,229 (-)NCBI
RefSeq Acc Id: XM_037999289   ⟹   XP_037855217
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,271 (-)NCBI
RefSeq Acc Id: XM_037999290   ⟹   XP_037855218
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,250 (-)NCBI
RefSeq Acc Id: XM_037999291   ⟹   XP_037855219
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,228 (-)NCBI
RefSeq Acc Id: XM_037999292   ⟹   XP_037855220
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,231 (-)NCBI
RefSeq Acc Id: XM_037999293   ⟹   XP_037855221
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038112,759,621 - 112,817,231 (-)NCBI
RefSeq Acc Id: XP_007996327   ⟸   XM_007998136
- Peptide Label: isoform X10
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996319   ⟸   XM_007998128
- Peptide Label: isoform X9
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996273   ⟸   XM_007998082
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996264   ⟸   XM_007998073
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996254   ⟸   XM_007998063
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996244   ⟸   XM_007998053
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996228   ⟸   XM_007998037
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000002310   ⟸   ENSCSAT00000004044
RefSeq Acc Id: XP_037855217   ⟸   XM_037999289
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855218   ⟸   XM_037999290
- Peptide Label: isoform X6
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855221   ⟸   XM_037999293
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855220   ⟸   XM_037999292
- Peptide Label: isoform X7
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855216   ⟸   XM_037999288
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855219   ⟸   XM_037999291
- Peptide Label: isoform X6
- UniProtKB: A0A0D9R121 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006009 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004044.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  Plakophilin/d_Catenin UniProtKB/TrEMBL
NCBI Gene CTNND1 ENTREZGENE
PANTHER PTHR10372 UniProtKB/TrEMBL
  PTHR10372:SF6 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PROSITE ARM_REPEAT UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0D9R121 ENTREZGENE, UniProtKB/TrEMBL