ST13 (ST13 Hsp70 interacting protein) - Rat Genome Database

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Gene: ST13 (ST13 Hsp70 interacting protein) Chlorocebus sabaeus
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Symbol: ST13
Name: ST13 Hsp70 interacting protein
RGD ID: 18409539
Description: ENCODES a protein that exhibits dATP binding (ortholog); Hsp70 protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN chaperone cofactor-dependent protein refolding (ortholog); negative regulation of protein refolding (ortholog); response to bacterium (ortholog); PARTICIPATES IN androgen signaling pathway; chaperone mediated autophagy pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hsc70-interacting protein; suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,373,970 - 23,413,054 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,375,723 - 23,412,742 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045102,161,727 - 102,195,149 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ST13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,373,970 - 23,413,054 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,375,723 - 23,412,742 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045102,161,727 - 102,195,149 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ST13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,824,535 - 40,856,639 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,824,535 - 40,856,639 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,220,539 - 41,252,643 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,550,545 - 39,582,633 (-)NCBINCBI36Build 36hg18NCBI36
Build 342239,545,102 - 39,577,187NCBI
Celera2225,024,269 - 25,056,358 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,182,572 - 24,215,046 (-)NCBIHuRef
CHM1_12241,179,290 - 41,211,764 (-)NCBICHM1_1
T2T-CHM13v2.02241,296,730 - 41,328,831 (-)NCBIT2T-CHM13v2.0
St13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,247,869 - 81,284,278 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,247,870 - 81,284,278 (-)EnsemblGRCm39 Ensembl
GRCm381581,365,044 - 81,399,694 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,363,669 - 81,400,077 (-)EnsemblGRCm38mm10GRCm38
MGSCv371581,195,474 - 81,230,124 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,192,299 - 81,226,949 (-)NCBIMGSCv36mm8
Celera1583,483,114 - 83,517,731 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.07NCBI
St13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,769,758 - 114,805,877 (-)NCBIGRCr8
mRatBN7.27112,891,007 - 112,925,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,844,375 - 112,925,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7114,653,298 - 114,688,067 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,876,850 - 116,911,568 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,846,210 - 116,880,977 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,585,770 - 122,635,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,585,771 - 122,635,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07122,561,392 - 122,612,277 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47119,694,123 - 119,728,936 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17119,728,353 - 119,763,166 (-)NCBI
Celera7109,210,016 - 109,245,175 (-)NCBICelera
Cytogenetic Map7q34NCBI
St13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,476,469 - 26,507,671 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,478,579 - 26,507,671 (-)NCBIChiLan1.0ChiLan1.0
ST13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22350,656,928 - 50,687,437 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,355,816 - 53,387,712 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02221,719,713 - 21,751,912 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12239,815,337 - 39,848,049 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2239,815,337 - 39,848,049 (-)Ensemblpanpan1.1panPan2
ST13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11024,379,997 - 24,411,764 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1024,379,997 - 24,411,766 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1024,314,161 - 24,345,833 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01025,127,715 - 25,159,445 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1025,127,684 - 25,161,322 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,842,961 - 24,874,594 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01025,163,854 - 25,195,541 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01025,338,235 - 25,369,960 (+)NCBIUU_Cfam_GSD_1.0
St13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,966,770 - 7,998,826 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936492976,928 - 1,010,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,583,048 - 7,617,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,583,074 - 7,617,766 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,763,686 - 4,796,346 (+)NCBISscrofa10.2Sscrofa10.2susScr3
St13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,634,970 - 7,661,974 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,634,910 - 7,663,135 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007975887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000003905   ⟹   ENSCSAP00000002177
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1923,375,723 - 23,412,742 (-)Ensembl
RefSeq Acc Id: XM_007975887   ⟹   XP_007974078
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11923,373,970 - 23,413,054 (-)NCBI
Vero_WHO_p1.0NW_023666045102,161,727 - 102,195,149 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974078 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002177
  ENSCSAP00000002177.1
RefSeq Acc Id: XP_007974078   ⟸   XM_007975887
- UniProtKB: A0A0D9R0N8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000002177   ⟸   ENSCSAT00000003905


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005882 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003905.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.100 UniProtKB/TrEMBL
  1.25.40.10 UniProtKB/TrEMBL
  6.10.250.3420 UniProtKB/TrEMBL
InterPro Hip_N UniProtKB/TrEMBL
  STI1 UniProtKB/TrEMBL
  STI1_HS-bd UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report csab:103223366 UniProtKB/TrEMBL
NCBI Gene ST13 ENTREZGENE
PANTHER HSC70-INTERACTING PROTEIN UniProtKB/TrEMBL
  HSC70-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam HipN UniProtKB/TrEMBL
  STI1 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9R0N8 ENTREZGENE, UniProtKB/TrEMBL