SSTR1 (somatostatin receptor 1) - Rat Genome Database

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Gene: SSTR1 (somatostatin receptor 1) Chlorocebus sabaeus
Analyze
Symbol: SSTR1
Name: somatostatin receptor 1
RGD ID: 18375432
Description: ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); somatostatin receptor activity (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); cerebellum development (ortholog); PARTICIPATES IN somatostatin signaling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Experimental Diabetes Mellitus (ortholog); neuroendocrine tumor (ortholog); FOUND IN cytoplasm (ortholog); G protein-coupled receptor heterodimeric complex (ortholog); G protein-coupled receptor homodimeric complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: somatostatin receptor type 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12415,000,190 - 15,006,757 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2415,003,116 - 15,004,291 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660534,033,896 - 4,039,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SSTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12415,000,190 - 15,006,757 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2415,003,116 - 15,004,291 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660534,033,896 - 4,039,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SSTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381438,207,904 - 38,213,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1438,207,904 - 38,213,067 (+)EnsemblGRCh38hg38GRCh38
GRCh371438,677,109 - 38,682,272 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361437,746,955 - 37,752,019 (+)NCBINCBI36Build 36hg18NCBI36
Build 341437,746,954 - 37,752,019NCBI
Celera1418,541,740 - 18,546,804 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1418,792,180 - 18,797,244 (+)NCBIHuRef
CHM1_11438,674,961 - 38,680,025 (+)NCBICHM1_1
T2T-CHM13v2.01432,396,603 - 32,401,766 (+)NCBIT2T-CHM13v2.0
Sstr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391258,258,524 - 58,262,822 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1258,258,558 - 58,260,673 (+)EnsemblGRCm39 Ensembl
GRCm381258,211,421 - 58,216,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1258,211,772 - 58,214,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv371259,312,791 - 59,317,023 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361259,129,816 - 59,132,456 (+)NCBIMGSCv36mm8
Celera1259,362,952 - 59,367,171 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1225.61NCBI
Sstr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8681,567,237 - 81,571,759 (+)NCBIGRCr8
mRatBN7.2675,832,292 - 75,836,806 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl675,832,530 - 75,836,802 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx676,235,331 - 76,239,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0676,534,673 - 76,538,973 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0675,962,144 - 75,966,444 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0679,252,914 - 79,258,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl679,254,339 - 79,258,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0688,783,414 - 88,787,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,803,393 - 78,806,978 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1678,806,518 - 78,810,104 (+)NCBI
Celera674,603,631 - 74,607,903 (+)NCBICelera
RH 3.4 Map6546.4RGD
Cytogenetic Map6q23NCBI
Sstr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540922,889,800 - 22,894,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540922,889,800 - 22,894,480 (-)NCBIChiLan1.0ChiLan1.0
SSTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21539,532,858 - 39,536,701 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11438,749,551 - 38,753,211 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01418,968,969 - 18,973,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11437,327,348 - 37,332,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1437,329,309 - 37,330,484 (+)Ensemblpanpan1.1panPan2
SSTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1816,571,069 - 16,575,730 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha816,377,472 - 16,378,647 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0816,688,125 - 16,691,797 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl816,688,172 - 16,689,347 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1816,381,728 - 16,382,903 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0816,439,948 - 16,441,123 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0816,740,560 - 16,741,735 (+)NCBIUU_Cfam_GSD_1.0
Sstr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864048,558,403 - 48,563,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649412,065,473 - 12,066,648 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649412,065,388 - 12,067,759 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl761,890,563 - 61,894,978 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1761,890,560 - 61,900,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2766,593,626 - 66,599,948 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sstr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248137,539,304 - 7,540,479 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248137,538,104 - 7,543,836 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000019492   ⟹   ENSCSAP00000018910
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2415,003,116 - 15,004,291 (+)Ensembl
RefSeq Acc Id: XM_007986541   ⟹   XP_007984732
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12415,000,190 - 15,006,757 (+)NCBI
Vero_WHO_p1.0NW_0236660534,033,897 - 4,039,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037983914   ⟹   XP_037839842
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660534,033,896 - 4,039,724 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007984732 (Get FASTA)   NCBI Sequence Viewer  
  XP_037839842 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018910.1
RefSeq Acc Id: XP_007984732   ⟸   XM_007986541
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000018910   ⟸   ENSCSAT00000019492
RefSeq Acc Id: XP_037839842   ⟸   XM_037983914
- Peptide Label: isoform X1
- UniProtKB: A0A0D9SDH1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019402 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019492.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Somatstn_rcpt UniProtKB/TrEMBL
  Somatstn_rcpt_1 UniProtKB/TrEMBL
KEGG Report csab:103228857 UniProtKB/TrEMBL
NCBI Gene SSTR1 ENTREZGENE
PANTHER NEUROPEPTIDES RECEPTOR UniProtKB/TrEMBL
  SOMATOSTATIN RECEPTOR TYPE 1 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  SOMATOSTATNR UniProtKB/TrEMBL
  SOMATOSTTN1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SDH1 ENTREZGENE, UniProtKB/TrEMBL