SSTR1 (somatostatin receptor 1) - Rat Genome Database

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Gene: SSTR1 (somatostatin receptor 1) Canis lupus familiaris
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Symbol: SSTR1
Name: somatostatin receptor 1
RGD ID: 12135678
Description: ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); somatostatin receptor activity (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); cerebellum development (ortholog); PARTICIPATES IN somatostatin signaling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); G protein-coupled receptor heterodimeric complex (ortholog); G protein-coupled receptor homodimeric complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: somatostatin receptor type 1; SS-1-R; SS1-R; SS1R
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1816,571,069 - 16,575,730 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha816,377,472 - 16,378,647 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0816,688,125 - 16,691,797 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl816,688,172 - 16,689,347 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1816,381,728 - 16,382,903 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0816,439,948 - 16,441,123 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0816,740,560 - 16,741,735 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SSTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1816,571,069 - 16,575,730 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha816,377,472 - 16,378,647 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0816,688,125 - 16,691,797 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl816,688,172 - 16,689,347 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1816,381,728 - 16,382,903 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0816,439,948 - 16,441,123 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0816,740,560 - 16,741,735 (+)NCBIUU_Cfam_GSD_1.0
SSTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381438,207,904 - 38,213,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1438,207,904 - 38,213,067 (+)EnsemblGRCh38hg38GRCh38
GRCh371438,677,109 - 38,682,272 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361437,746,955 - 37,752,019 (+)NCBINCBI36Build 36hg18NCBI36
Build 341437,746,954 - 37,752,019NCBI
Celera1418,541,740 - 18,546,804 (+)NCBICelera
Cytogenetic Map14q21.1NCBI
HuRef1418,792,180 - 18,797,244 (+)NCBIHuRef
CHM1_11438,674,961 - 38,680,025 (+)NCBICHM1_1
T2T-CHM13v2.01432,396,603 - 32,401,766 (+)NCBIT2T-CHM13v2.0
Sstr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391258,258,524 - 58,262,822 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1258,258,558 - 58,260,673 (+)EnsemblGRCm39 Ensembl
GRCm381258,211,421 - 58,216,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1258,211,772 - 58,214,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv371259,312,791 - 59,317,023 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361259,129,816 - 59,132,456 (+)NCBIMGSCv36mm8
Celera1259,362,952 - 59,367,171 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1225.61NCBI
Sstr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8681,567,237 - 81,571,759 (+)NCBIGRCr8
mRatBN7.2675,832,292 - 75,836,806 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl675,832,530 - 75,836,802 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx676,235,331 - 76,239,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0676,534,673 - 76,538,973 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0675,962,144 - 75,966,444 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0679,252,914 - 79,258,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl679,254,339 - 79,258,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0688,783,414 - 88,787,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4678,803,393 - 78,806,978 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1678,806,518 - 78,810,104 (+)NCBI
Celera674,603,631 - 74,607,903 (+)NCBICelera
RH 3.4 Map6546.4RGD
Cytogenetic Map6q23NCBI
Sstr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540922,889,800 - 22,894,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540922,889,800 - 22,894,480 (-)NCBIChiLan1.0ChiLan1.0
SSTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21539,532,858 - 39,536,701 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11438,749,551 - 38,753,211 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01418,968,969 - 18,973,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11437,327,348 - 37,332,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1437,329,309 - 37,330,484 (+)Ensemblpanpan1.1panPan2
Sstr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864048,558,403 - 48,563,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649412,065,473 - 12,066,648 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649412,065,388 - 12,067,759 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl761,890,563 - 61,894,978 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1761,890,560 - 61,900,567 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2766,593,626 - 66,599,948 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SSTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12415,000,190 - 15,006,757 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2415,003,116 - 15,004,291 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660534,033,896 - 4,039,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sstr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248137,539,304 - 7,540,479 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248137,538,104 - 7,543,836 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SSTR1
54 total Variants

Expression


Sequence


RefSeq Acc Id: ENSCAFT00845005541   ⟹   ENSCAFP00845004397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl816,688,172 - 16,689,347 (+)Ensembl
RefSeq Acc Id: NM_001031816   ⟹   NP_001026986
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1816,572,110 - 16,573,285 (+)NCBI
Dog10K_Boxer_Tasha816,377,472 - 16,378,647 (+)NCBI
ROS_Cfam_1.0816,688,172 - 16,689,347 (+)NCBI
UMICH_Zoey_3.1816,381,728 - 16,382,903 (+)NCBI
UNSW_CanFamBas_1.0816,439,948 - 16,441,123 (+)NCBI
UU_Cfam_GSD_1.0816,740,560 - 16,741,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038672835   ⟹   XP_038528763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0816,688,125 - 16,691,797 (+)NCBI
RefSeq Acc Id: XM_038672836   ⟹   XP_038528764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0816,688,125 - 16,691,797 (+)NCBI
RefSeq Acc Id: NP_001026986   ⟸   NM_001031816
- UniProtKB: Q49LX5 (UniProtKB/Swiss-Prot),   A0A8C0LGF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038528763   ⟸   XM_038672835
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M047 (UniProtKB/TrEMBL),   A0A8I3MMW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528764   ⟸   XM_038672836
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M047 (UniProtKB/TrEMBL),   A0A8I3MMW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845004397   ⟸   ENSCAFT00845005541

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013755 UniProtKB/Swiss-Prot
  ENSCAFG00030002633 UniProtKB/TrEMBL
  ENSCAFG00040000183 UniProtKB/Swiss-Prot
  ENSCAFG00805005771 UniProtKB/Swiss-Prot
  ENSCAFG00845003155 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000021824.5 UniProtKB/Swiss-Prot
  ENSCAFT00030004856.1 UniProtKB/TrEMBL
  ENSCAFT00040000280.1 UniProtKB/Swiss-Prot
  ENSCAFT00805010556 UniProtKB/Swiss-Prot
  ENSCAFT00845005541 ENTREZGENE
  ENSCAFT00845005541.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Somatstn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Somatstn_rcpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:403455 UniProtKB/Swiss-Prot
NCBI Gene SSTR1 ENTREZGENE
PANTHER NEUROPEPTIDES RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOMATOSTATIN RECEPTOR TYPE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOMATOSTATNR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOMATOSTTN1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0LGF6 ENTREZGENE
  A0A8C0M047 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MMW3 ENTREZGENE, UniProtKB/TrEMBL
  Q49LX5 ENTREZGENE
  Q7YS18_CANLF UniProtKB/TrEMBL
  SSR1_CANLF UniProtKB/Swiss-Prot
VGNC ID VGNC:46843 ENTREZGENE