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Gene: Lipt1 (lipoyltransferase 1) Mus musculus

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Symbol:

Lipt1

Name:

lipoyltransferase 1

RGD ID:

1616295

MGI Page

MGI

Description:

Enables N-acyltransferase activity. Involved in protein lipoylation. Is active in mitochondrion. Is expressed in embryo. Orthologous to human LIPT1 (lipoyltransferase 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

EG623661; lipoate biosynthesis protein; lipoate-protein ligase; lipoyl amidotransferase LIPT1, mitochondrial; lipoyl ligase; lipoyltransferase 1, mitochondrial; MGC28431

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIPT1 (lipoyltransferase 1)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Lipt1 (lipoyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lipt1 (lipoyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIPT1 (lipoyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	C10H2orf15 (chromosome 10 C2orf15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lipt1 (lipoyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LIPT1 (lipoyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIPT1 (lipoyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lipt1 (lipoyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Lipt1 (lipoyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LIPT1 (lipoyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lipt1 (lipoyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	AIM22	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C45G3.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG44243	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lipt1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,910,819 - 37,915,309 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,910,819 - 37,915,309 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,871,738 - 37,876,228 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,871,738 - 37,876,228 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,929,051 - 37,933,143 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,816,752 - 37,821,933 (+)	NCBI		MGSCv36	mm8
Celera	1	37,653,124 - 37,657,217 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	16.13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	Cardiovascular Abnormalities		ISO	LIPT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Abnormality of cardiovascular system morphology	ClinVar	PMID:25741868 more ...
Lipt1	Mouse	Failure to Thrive		ISO	LIPT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Failure to thrive	ClinVar	PMID:25741868 more ...
Lipt1	Mouse	genetic disease		ISO	LIPT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25326635 more ...
Lipt1	Mouse	Hearing Loss		ISO	LIPT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hearing impairment	ClinVar	PMID:25741868 more ...
Lipt1	Mouse	Lipoyltransferase 1 Deficiency		ISO	LIPT1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:17570395 more ...
Lipt1	Mouse	Muscle Hypotonia		ISO	LIPT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: poor muscle tone	ClinVar	PMID:25741868 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	Lipoyltransferase 1 Deficiency		ISO	LIPT1 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Lipt1 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in increased expression of LIPT1 mRNA	CTD	PMID:33387578
Lipt1	Mouse	2,4-dinitrotoluene	affects expression	ISO	Lipt1 (Rattus norvegicus)	6480464	2 and 4-dinitrotoluene affects the expression of LIPT1 mRNA	CTD	PMID:21346803
Lipt1	Mouse	2,6-dinitrotoluene	affects expression	ISO	Lipt1 (Rattus norvegicus)	6480464	2 and 6-dinitrotoluene affects the expression of LIPT1 mRNA	CTD	PMID:21346803
Lipt1	Mouse	2-palmitoylglycerol	increases expression	ISO	LIPT1 (Homo sapiens)	6480464	2-palmitoylglycerol results in increased expression of LIPT1 mRNA	CTD	PMID:37199045
Lipt1	Mouse	aristolochic acid A	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of LIPT1 mRNA	CTD	PMID:33212167
Lipt1	Mouse	arsane	affects methylation	ISO	LIPT1 (Homo sapiens)	6480464	Arsenic affects the methylation of LIPT1 gene	CTD	PMID:25304211
Lipt1	Mouse	arsenic atom	affects methylation	ISO	LIPT1 (Homo sapiens)	6480464	Arsenic affects the methylation of LIPT1 gene	CTD	PMID:25304211
Lipt1	Mouse	atrazine	increases expression	ISO	LIPT1 (Homo sapiens)	6480464	Atrazine results in increased expression of LIPT1 mRNA	CTD	PMID:22378314
Lipt1	Mouse	benzo[a]pyrene	increases methylation	ISO	LIPT1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of LIPT1 promoter	CTD	PMID:27901495
Lipt1	Mouse	bisphenol A	decreases expression	ISO	Lipt1 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of LIPT1 mRNA	CTD	PMID:25181051
Lipt1	Mouse	cadmium dichloride	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of LIPT1 mRNA	CTD	PMID:38568856
Lipt1	Mouse	cisplatin	increases expression	ISO	LIPT1 (Homo sapiens)	6480464	Cisplatin results in increased expression of LIPT1 mRNA	CTD	PMID:27392435
Lipt1	Mouse	copper atom	multiple interactions	ISO	LIPT1 (Homo sapiens)	6480464	[Disulfiram binds to Copper] which results in decreased expression of LIPT1 mRNA	CTD	PMID:24690739
Lipt1	Mouse	copper(0)	multiple interactions	ISO	LIPT1 (Homo sapiens)	6480464	[Disulfiram binds to Copper] which results in decreased expression of LIPT1 mRNA	CTD	PMID:24690739
Lipt1	Mouse	copper(II) sulfate	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of LIPT1 mRNA	CTD	PMID:19549813
Lipt1	Mouse	cyclosporin A	increases expression	ISO	LIPT1 (Homo sapiens)	6480464	Cyclosporine results in increased expression of LIPT1 mRNA	CTD	PMID:25562108
Lipt1	Mouse	Dibutyl phosphate	affects expression	ISO	LIPT1 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of LIPT1 mRNA	CTD	PMID:37042841
Lipt1	Mouse	disulfiram	multiple interactions	ISO	LIPT1 (Homo sapiens)	6480464	[Disulfiram binds to Copper] which results in decreased expression of LIPT1 mRNA	CTD	PMID:24690739
Lipt1	Mouse	diuron	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Diuron results in decreased expression of LIPT1 mRNA	CTD	PMID:35967413
Lipt1	Mouse	doxorubicin	increases expression	ISO	LIPT1 (Homo sapiens)	6480464	Doxorubicin results in increased expression of LIPT1 mRNA	CTD	PMID:29803840
Lipt1	Mouse	elemental selenium	multiple interactions	ISO	LIPT1 (Homo sapiens)	6480464	[Selenium co-treated with Vitamin E] results in decreased expression of LIPT1 mRNA	CTD	PMID:19244175
Lipt1	Mouse	elemental selenium	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Selenium results in decreased expression of LIPT1 mRNA	CTD	PMID:19244175
Lipt1	Mouse	formaldehyde	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Formaldehyde results in decreased expression of LIPT1 mRNA	CTD	PMID:20655997
Lipt1	Mouse	gallic acid	increases expression	ISO	LIPT1 (Homo sapiens)	6480464	Gallic Acid results in increased expression of LIPT1 mRNA	CTD	PMID:34408198
Lipt1	Mouse	gentamycin	decreases expression	ISO	Lipt1 (Rattus norvegicus)	6480464	Gentamicins results in decreased expression of LIPT1 mRNA	CTD	PMID:33387578
Lipt1	Mouse	quercetin	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Quercetin results in decreased expression of LIPT1 mRNA	CTD	PMID:21632981
Lipt1	Mouse	selenium atom	multiple interactions	ISO	LIPT1 (Homo sapiens)	6480464	[Selenium co-treated with Vitamin E] results in decreased expression of LIPT1 mRNA	CTD	PMID:19244175
Lipt1	Mouse	selenium atom	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Selenium results in decreased expression of LIPT1 mRNA	CTD	PMID:19244175
Lipt1	Mouse	titanium dioxide	decreases expression	EXP		6480464	titanium dioxide results in decreased expression of LIPT1 mRNA	CTD	PMID:35295148
Lipt1	Mouse	titanium dioxide	decreases methylation	EXP		6480464	titanium dioxide results in decreased methylation of LIPT1 gene	CTD	PMID:35295148
Lipt1	Mouse	triptonide	increases expression	EXP		6480464	triptonide results in increased expression of LIPT1 mRNA	CTD	PMID:33045310
Lipt1	Mouse	valproic acid	affects expression	ISO	LIPT1 (Homo sapiens)	6480464	Valproic Acid affects the expression of LIPT1 mRNA	CTD	PMID:25979313
Lipt1	Mouse	valproic acid	decreases methylation	ISO	LIPT1 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of LIPT1 gene	CTD	PMID:29154799
Lipt1	Mouse	valproic acid	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of LIPT1 mRNA	CTD	PMID:23179753 more ...
Lipt1	Mouse	vitamin E	multiple interactions	ISO	LIPT1 (Homo sapiens)	6480464	[Selenium co-treated with Vitamin E] results in decreased expression of LIPT1 mRNA	CTD	PMID:19244175
Lipt1	Mouse	vitamin E	decreases expression	ISO	LIPT1 (Homo sapiens)	6480464	Vitamin E results in decreased expression of LIPT1 mRNA	CTD	PMID:19244175

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	protein lipoylation	involved_in	IMP		2290270	PMID:32804083	MGI	PMID:32804083
Lipt1	Mouse	protein lipoylation	involved_in	IMP	MGI:6448947	2290270	PMID:31042466 and PMID:35388219	MGI	PMID:31042466 and PMID:35388219

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	cytoplasm	is_active_in	IBA	PANTHER:PTN000285676 more ...	2290270		GO_Central	GO_REF:0000033
Lipt1	Mouse	mitochondrion	is_active_in	IDA		2290270	PMID:23077570	MGI	PMID:23077570
Lipt1	Mouse	mitochondrion	located_in	HDA		2290270	PMID:18614015	MGI	PMID:18614015
Lipt1	Mouse	mitochondrion	is_active_in	IBA	PANTHER:PTN001757132 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	lipoyltransferase activity	enables	IBA	PANTHER:PTN000285676 more ...	2290270		GO_Central	GO_REF:0000033
Lipt1	Mouse	lipoyltransferase activity	enables	ISS	UniProtKB:O46419	2290270		UniProt	GO_REF:0000024
Lipt1	Mouse	N-acyltransferase activity	enables	IMP	MGI:6448947	2290270	PMID:31042466	MGI	PMID:31042466
Lipt1	Mouse	N-acyltransferase activity	enables	IMP		2290270	PMID:32804083	MGI	PMID:32804083
Lipt1	Mouse	protein binding	enables	ISO	UniProtKB:P17252	9068941	PMID:33961781	IntAct	PMID:33961781
Lipt1	Mouse	protein binding	enables	ISO	UniProtKB:P13473-2 more ...	9068941	PMID:32814053	IntAct	PMID:32814053

Imported Annotations - KEGG (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	lipoic acid metabolic pathway		IEA		6907045		KEGG	mmu:00785

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lipt1	Mouse	abnormal retina blood vessel morphology		IEA		5509061		MGI
Lipt1	Mouse	abnormal spleen morphology		IEA		5509061		MGI
Lipt1	Mouse	decreased embryo size		IAGP		5509061		MGI	PMID:31042466
Lipt1	Mouse	embryonic lethality during organogenesis, complete penetrance		IAGP		5509061		MGI	PMID:31042466
Lipt1	Mouse	pallor		IAGP		5509061		MGI	PMID:31042466
Lipt1	Mouse	preweaning lethality, complete penetrance		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:17015433	PMID:18614015
PMID:18799693	PMID:21677750	PMID:21873635	PMID:23077570	PMID:29987032	PMID:31042466	PMID:32804083	PMID:35388219	PMID:38355793

Lipt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,910,819 - 37,915,309 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,910,819 - 37,915,309 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,871,738 - 37,876,228 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,871,738 - 37,876,228 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,929,051 - 37,933,143 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,816,752 - 37,821,933 (+)	NCBI		MGSCv36	mm8
Celera	1	37,653,124 - 37,657,217 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	16.13	NCBI

LIPT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	99,154,967 - 99,163,137 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	99,154,955 - 99,163,157 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	99,771,430 - 99,779,600 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	99,137,850 - 99,146,043 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	93,976,106 - 93,984,222 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	93,537,214 - 93,545,383 (+)	NCBI		HuRef
CHM1_1	2	99,776,369 - 99,784,525 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	99,613,838 - 99,622,016 (+)	NCBI		T2T-CHM13v2.0

Lipt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,603,972 - 47,609,365 (+)	NCBI		GRCr8
mRatBN7.2	9	40,107,938 - 40,118,268 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	40,098,615 - 40,113,565 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,604,043 - 48,609,412 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,726,798 - 53,732,167 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	52,008,904 - 52,014,263 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	44,466,627 - 44,471,986 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	44,466,627 - 44,471,986 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	44,164,007 - 44,169,366 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,822,120 - 36,827,479 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,825,135 - 36,827,380 (+)	NCBI
Celera	9	37,862,435 - 37,867,794 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

Lipt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	5,480,279 - 5,492,250 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	5,480,279 - 5,492,259 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIPT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	29,264,381 - 29,277,632 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	29,266,189 - 29,280,392 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	100,136,392 - 100,144,665 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	100,083,711 - 100,091,689 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

C10H2orf15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	43,545,023 - 43,556,215 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	43,468,490 - 43,480,004 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	44,417,127 - 44,428,643 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	10	44,127,161 - 44,138,669 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	44,410,705 - 44,421,962 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	44,595,142 - 44,606,656 (-)	NCBI		UU_Cfam_GSD_1.0

Lipt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	84,923,893 - 84,929,911 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	1,638,036 - 1,645,607 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	1,640,255 - 1,645,588 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIPT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	55,176,387 - 55,177,508 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LIPT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	2,865,856 - 2,887,132 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	2,885,887 - 2,886,987 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	170,458,562 - 170,489,721 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lipt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	4,155,943 - 4,163,642 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	4,155,827 - 4,163,648 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Lipt1
207 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	1246
Count of miRNA genes:	623
Interacting mature miRNAs:	782
Transcripts:	ENSMUST00000041621, ENSMUST00000128085, ENSMUST00000142670, ENSMUST00000144440
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1301011	Cplaq4_m	circadian period of locomotor activity 4 (mouse)			Not determined		1	9673442	43673601	Mouse
1357524	W6q14_m	weight 6 weeks QTL 14 (mouse)			Not determined		1	34760138	73976915	Mouse
1301073	Orch5_m	autoimmune orchitis resistance 5 (mouse)			Not determined		1	19065351	53065454	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
1357651	Lgq5_m	late growth QTL 5 (mouse)			Not determined		1	34760138	73976915	Mouse
11100001	Col4a1m1_m	collagen, type IV, alpha 1 modifier 1 (mouse)					1	25550191	62946882	Mouse
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
1301240	Sluc15_m	susceptibility to lung cancer 15 (mouse)			Not determined		1	19065351	53065454	Mouse
1357759	W3q12_m	weight 3 weeks QTL 12 (mouse)			Not determined		1	34760138	73976915	Mouse
1301471	Obq2_m	obesity QTL 2 (mouse)			Not determined		1	3941620	37941887	Mouse
14700685	Civq2_m	cerebral infarct volume QTL 2 (mouse)					1	11340482	45340482	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1301756	Pgia1_m	proteoglycan induced arthritis 1 (mouse)			Not determined		1	19065351	53065454	Mouse
12880407	V125Dq2_m	vitamin D active form serum level QTL 2 (mouse)					1	19339081	53339081	Mouse
1357824	Estoq4_m	embryo survival total QTL 4 (mouse)			Not determined		1	34760138	73976915	Mouse
1357506	W10q6_m	weight 10 weeks QTL 6 (mouse)			Not determined		1	34760138	73976915	Mouse
1357475	w3q13_m	weight 3 weeks QTL 13 (mouse)			Not determined		1	23109591	73976915	Mouse
39128207	Lwq16_m	liver weight QTL 16 (mouse)					1	34760138	73976915	Mouse
10043970	Obq23_m	obesity QTL 23 (mouse)			Not determined		1	5012665	39012665	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
12880409	V125Dq1_m	vitamin D active form serum level QTL 1 (mouse)					1	26039160	60039160	Mouse
4142433	Hbnr1_m	Heligmosomoides bakeri nematode resistance 1 (mouse)			Not determined			25550191	58273271	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001037918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001377029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001377030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001377031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001377032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001377033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001377034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK039030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK048005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ442858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV649848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000041621 ⟹ ENSMUSP00000038739

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,911,287 - 37,915,309 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,872,206 - 37,876,228 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000128085 ⟹ ENSMUSP00000119243

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,910,819 - 37,914,424 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,871,738 - 37,875,343 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000142670 ⟹ ENSMUSP00000122160

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,911,455 - 37,914,541 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,872,374 - 37,875,460 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000144440 ⟹ ENSMUSP00000115465

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	37,911,643 - 37,914,635 (+)	Ensembl
GRCm38.p6 Ensembl	1	37,872,562 - 37,875,554 (+)	Ensembl

RefSeq Acc Id:

NM_001037918 ⟹ NP_001033007

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,911,300 - 37,915,309 (+)	NCBI
GRCm38	1	37,872,219 - 37,876,228 (+)	NCBI
MGSCv37	1	37,929,051 - 37,933,143 (+)	RGD
Celera	1	37,653,124 - 37,657,217 (+)	RGD
cM Map	1		ENTREZGENE

Sequence:

show sequence

ACTCCCCAGCAACTGCGTCTAGAGGGCTGAGTGTTCTGGGTTCCACGTGGGTTGATTGAGTTTTAATTTGCAGAAAAAGCTGCTGCGGGCGCGACCGGAAGTGGCAGCATGCTAATTCCACTTTCAAT
GAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCAATGATGTATATGAAAATCTGGCTTTTGAAGACT
GGATCCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAACCTCCATCTGATGAGACAGGAA
GGAATCAAACTGGCTCGGAGGAAGAGTGGAGGAGGAGCCGTGTACCACGACATGGGTAACATCAACCTCACCTTCTTTACCACCAAAACCAAGTATGACAGAATGGAAAATCTGAAACTAATCGTGAG
AGCTCTGAATGCTGTCCAACCCCAGCTGGATGTGCAGCCTACCAAAAAGTTTGACCTGCTACTCGACGGGCAGTTTAAAATCTCAGGAACCGCATCAAAGATCGGCCGGACTGCCGCGTACCACCACT
GCACCTTGCTATGCAGCACCAACCGGACAGCTCTGTCTTCTTCGCTGAAGAGCCCGTACTGCGGGATAAAGAGCAACGCCACTCCCAGCATCCCTTCCGCTGTCAAAAACCTTCTGGAAAGAGATTCC
ACGCTGACCTGTGAAGTTCTGATGAGTGCGGTGGCTGCAGAGTACGCGGCGCATCATCAAGTTGATGGTCACGTCAACCTAATAAACCCTGCAGATGAGACGATGTTCCCTGGAATAAACCGCAAAGT
CAAGGAACTGCAAAGTTGGGAGTGGGTATACGGCAGGACTCCCAAGTTTACCGTGGACACCACGTTTCATGTGCCGTATGAGCAGGCGCATTTGGAAATCCAAGTGTTCATGGATGTAAAGAACGGAC
GAATCGAAACCTGCGCTATTAAGGCACCCGATCACTGGCTGCCGCTGGAAATAGGTGAGAAATTAAACTCAAGTTTCATCGGCAGCAAATTCTGCCCCGTTGAAACCACCCTGCTAACGAATGTATTA
CTGAGAACATGTCCAGGCGACCATCACTTACACAGTAAATGGTACATTCTGTGTGAAAAAATCAGGGGGATAATGTGACCCTAACAACTTTGTCTACACTGGCAGTTTTGGTGAGAAAAAAACTTTAA
ACTACAATTTGTCTTATATCTTAACAGAAATAGGGGTGTCAGTTTGAACCTGTGTTGGTCTTGAGGTGGCCTGTCCCTAATTTCAACTCCTCAGCTTTTGTCAGACTTTGATTGATAATCTGTTAAGG
GTTTTGGCACTTTCAGGGCCTCGTCCTCTTCCATTTCTCCTCTCATTAAACTTCAGAGAAGAAA

hide sequence

RefSeq Acc Id:

NM_001377029 ⟹ NP_001363958

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,911,431 - 37,915,309 (+)	NCBI
GRCm38	1	37,872,350 - 37,876,228 (+)	NCBI

Sequence:

show sequence

AGTGAATTCTTTGCGGGTTGTGGAGGCACACGCTGAGCAGGAGTGGGTGCTGCGGAGAGCACGC
CATGCTAATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCAATGATGTATATG
AAAATCTGGCTTTTGAAGACTGGATCCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAAC
CTCCATCTGATGAGACAGGAAGGAATCAAACTGGCTCGGAGGAAGAGTGGAGGAGGAGCCGTGTACCACGACATGGGTAACATCAACCTCACCTTCTTTACCACCAAAACCAAGTATGACAGAATGGA
AAATCTGAAACTAATCGTGAGAGCTCTGAATGCTGTCCAACCCCAGCTGGATGTGCAGCCTACCAAAAAGTTTGACCTGCTACTCGACGGGCAGTTTAAAATCTCAGGAACCGCATCAAAGATCGGCC
GGACTGCCGCGTACCACCACTGCACCTTGCTATGCAGCACCAACCGGACAGCTCTGTCTTCTTCGCTGAAGAGCCCGTACTGCGGGATAAAGAGCAACGCCACTCCCAGCATCCCTTCCGCTGTCAAA
AACCTTCTGGAAAGAGATTCCACGCTGACCTGTGAAGTTCTGATGAGTGCGGTGGCTGCAGAGTACGCGGCGCATCATCAAGTTGATGGTCACGTCAACCTAATAAACCCTGCAGATGAGACGATGTT
CCCTGGAATAAACCGCAAAGTCAAGGAACTGCAAAGTTGGGAGTGGGTATACGGCAGGACTCCCAAGTTTACCGTGGACACCACGTTTCATGTGCCGTATGAGCAGGCGCATTTGGAAATCCAAGTGT
TCATGGATGTAAAGAACGGACGAATCGAAACCTGCGCTATTAAGGCACCCGATCACTGGCTGCCGCTGGAAATAGGTGAGAAATTAAACTCAAGTTTCATCGGCAGCAAATTCTGCCCCGTTGAAACC
ACCCTGCTAACGAATGTATTACTGAGAACATGTCCAGGCGACCATCACTTACACAGTAAATGGTACATTCTGTGTGAAAAAATCAGGGGGATAATGTGACCCTAACAACTTTGTCTACACTGGCAGTT
TTGGTGAGAAAAAAACTTTAAACTACAATTTGTCTTATATCTTAACAGAAATAGGGGTGTCAGTTTGAACCTGTGTTGGTCTTGAGGTGGCCTGTCCCTAATTTCAACTCCTCAGCTTTTGTCAGACT
TTGATTGATAATCTGTTAAGGGTTTTGGCACTTTCAGGGCCTCGTCCTCTTCCATTTCTCCTCTCATTAAACTTCAGAGAAGAAA

hide sequence

RefSeq Acc Id:

NM_001377030 ⟹ NP_001363959

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,911,431 - 37,915,309 (+)	NCBI
GRCm38	1	37,872,350 - 37,876,228 (+)	NCBI

Sequence:

show sequence

AGTGAATTCTTTGCGGGTTGTGGAGGCACACGCTGAGCAGGAGTGGGTGCTGCGGAGAGCACGCGTGCGTCCCATGGGCCCCTCCTATTGGTTCTGAAAGCTCTGCAGATTACACCTGCATGCTAATT
CCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCAATGATGTATATGAAAATCTGGC
TTTTGAAGACTGGATCCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAACCTCCATCTGA
TGAGACAGGAAGGAATCAAACTGGCTCGGAGGAAGAGTGGAGGAGGAGCCGTGTACCACGACATGGGTAACATCAACCTCACCTTCTTTACCACCAAAACCAAGTATGACAGAATGGAAAATCTGAAA
CTAATCGTGAGAGCTCTGAATGCTGTCCAACCCCAGCTGGATGTGCAGCCTACCAAAAAGTTTGACCTGCTACTCGACGGGCAGTTTAAAATCTCAGGAACCGCATCAAAGATCGGCCGGACTGCCGC
GTACCACCACTGCACCTTGCTATGCAGCACCAACCGGACAGCTCTGTCTTCTTCGCTGAAGAGCCCGTACTGCGGGATAAAGAGCAACGCCACTCCCAGCATCCCTTCCGCTGTCAAAAACCTTCTGG
AAAGAGATTCCACGCTGACCTGTGAAGTTCTGATGAGTGCGGTGGCTGCAGAGTACGCGGCGCATCATCAAGTTGATGGTCACGTCAACCTAATAAACCCTGCAGATGAGACGATGTTCCCTGGAATA
AACCGCAAAGTCAAGGAACTGCAAAGTTGGGAGTGGGTATACGGCAGGACTCCCAAGTTTACCGTGGACACCACGTTTCATGTGCCGTATGAGCAGGCGCATTTGGAAATCCAAGTGTTCATGGATGT
AAAGAACGGACGAATCGAAACCTGCGCTATTAAGGCACCCGATCACTGGCTGCCGCTGGAAATAGGTGAGAAATTAAACTCAAGTTTCATCGGCAGCAAATTCTGCCCCGTTGAAACCACCCTGCTAA
CGAATGTATTACTGAGAACATGTCCAGGCGACCATCACTTACACAGTAAATGGTACATTCTGTGTGAAAAAATCAGGGGGATAATGTGACCCTAACAACTTTGTCTACACTGGCAGTTTTGGTGAGAA
AAAAACTTTAAACTACAATTTGTCTTATATCTTAACAGAAATAGGGGTGTCAGTTTGAACCTGTGTTGGTCTTGAGGTGGCCTGTCCCTAATTTCAACTCCTCAGCTTTTGTCAGACTTTGATTGATA
ATCTGTTAAGGGTTTTGGCACTTTCAGGGCCTCGTCCTCTTCCATTTCTCCTCTCATTAAACTTCAGAGAAGAAA

hide sequence

RefSeq Acc Id:

NM_001377031 ⟹ NP_001363960

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,911,431 - 37,915,309 (+)	NCBI
GRCm38	1	37,872,350 - 37,876,228 (+)	NCBI

Sequence:

show sequence

AGTGAATTCTTTGCGGGTTGTGGAGGCACACGCTGAGCAGGAGTGGGTGCTGCGGAGAGCACGCGTGCGTCCCATGGGCCCCTCCTATTGGTTCTGAAAGCTCTGCAGATTACACCTGGTGCTCCGGA
CGTAATTTCATTATTGGGAACAGTTGATTTCTAATACGGCGTAGGGTAAACTAAACAAGACATTCAGTGCTAGTCGCGTGCCTGCTCCCGAAGAGTAAAGCTTGCTTAAAACATGCTAATTCCACTTT
CAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCAATGATGTATATGAAAATCTGGCTTTTGAA
GACTGGATCCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAACCTCCATCTGATGAGACA
GGAAGGAATCAAACTGGCTCGGAGGAAGAGTGGAGGAGGAGCCGTGTACCACGACATGGGTAACATCAACCTCACCTTCTTTACCACCAAAACCAAGTATGACAGAATGGAAAATCTGAAACTAATCG
TGAGAGCTCTGAATGCTGTCCAACCCCAGCTGGATGTGCAGCCTACCAAAAAGTTTGACCTGCTACTCGACGGGCAGTTTAAAATCTCAGGAACCGCATCAAAGATCGGCCGGACTGCCGCGTACCAC
CACTGCACCTTGCTATGCAGCACCAACCGGACAGCTCTGTCTTCTTCGCTGAAGAGCCCGTACTGCGGGATAAAGAGCAACGCCACTCCCAGCATCCCTTCCGCTGTCAAAAACCTTCTGGAAAGAGA
TTCCACGCTGACCTGTGAAGTTCTGATGAGTGCGGTGGCTGCAGAGTACGCGGCGCATCATCAAGTTGATGGTCACGTCAACCTAATAAACCCTGCAGATGAGACGATGTTCCCTGGAATAAACCGCA
AAGTCAAGGAACTGCAAAGTTGGGAGTGGGTATACGGCAGGACTCCCAAGTTTACCGTGGACACCACGTTTCATGTGCCGTATGAGCAGGCGCATTTGGAAATCCAAGTGTTCATGGATGTAAAGAAC
GGACGAATCGAAACCTGCGCTATTAAGGCACCCGATCACTGGCTGCCGCTGGAAATAGGTGAGAAATTAAACTCAAGTTTCATCGGCAGCAAATTCTGCCCCGTTGAAACCACCCTGCTAACGAATGT
ATTACTGAGAACATGTCCAGGCGACCATCACTTACACAGTAAATGGTACATTCTGTGTGAAAAAATCAGGGGGATAATGTGACCCTAACAACTTTGTCTACACTGGCAGTTTTGGTGAGAAAAAAACT
TTAAACTACAATTTGTCTTATATCTTAACAGAAATAGGGGTGTCAGTTTGAACCTGTGTTGGTCTTGAGGTGGCCTGTCCCTAATTTCAACTCCTCAGCTTTTGTCAGACTTTGATTGATAATCTGTT
AAGGGTTTTGGCACTTTCAGGGCCTCGTCCTCTTCCATTTCTCCTCTCATTAAACTTCAGAGAAGAAA

hide sequence

RefSeq Acc Id:

NM_001377032 ⟹ NP_001363961

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,911,431 - 37,915,309 (+)	NCBI
GRCm38	1	37,872,350 - 37,876,228 (+)	NCBI

Sequence:

show sequence

AGTGAATTCTTTGCGGGTTGTGGAGGCACACGCTGAGCAGGAGTGGGTGCTGCGGAGAGCACGCGTGCGTCCCATGGGCCCCTCCTATTGGTTCTGAAAGCTCTGCAGATTACACCTGGTGCTCCGGA
CGTAATTTCATTATTGGGAACAGTTGATTTCTAATACGGCGTAGGGTAAACTAAACAAGACATTCAGTGCTAGTCGCGTGCCTGCTCCCGAAGAGTAAAGCTTGCTTAAAAGTTCGTAATCACTTCCA
GGTTTGGATCGCGTTATTAGGAGGATAGCAAATAGTTTTGCATGCTAATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCAGCTGGCTTTAAAAGCCCACCCACA
CATGGGCTCATTTTACAGTCGATCTCCAATGATGTATATGAAAATCTGGCTTTTGAAGACTGGATCCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGT
CGTCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAACCTCCATCTGATGAGACAGGAAGGAATCAAACTGGCTCGGAGGAAGAGTGGAGGAGGAGCCGTGTACCACGACATGGGTAACATCAACC
TCACCTTCTTTACCACCAAAACCAAGTATGACAGAATGGAAAATCTGAAACTAATCGTGAGAGCTCTGAATGCTGTCCAACCCCAGCTGGATGTGCAGCCTACCAAAAAGTTTGACCTGCTACTCGAC
GGGCAGTTTAAAATCTCAGGAACCGCATCAAAGATCGGCCGGACTGCCGCGTACCACCACTGCACCTTGCTATGCAGCACCAACCGGACAGCTCTGTCTTCTTCGCTGAAGAGCCCGTACTGCGGGAT
AAAGAGCAACGCCACTCCCAGCATCCCTTCCGCTGTCAAAAACCTTCTGGAAAGAGATTCCACGCTGACCTGTGAAGTTCTGATGAGTGCGGTGGCTGCAGAGTACGCGGCGCATCATCAAGTTGATG
GTCACGTCAACCTAATAAACCCTGCAGATGAGACGATGTTCCCTGGAATAAACCGCAAAGTCAAGGAACTGCAAAGTTGGGAGTGGGTATACGGCAGGACTCCCAAGTTTACCGTGGACACCACGTTT
CATGTGCCGTATGAGCAGGCGCATTTGGAAATCCAAGTGTTCATGGATGTAAAGAACGGACGAATCGAAACCTGCGCTATTAAGGCACCCGATCACTGGCTGCCGCTGGAAATAGGTGAGAAATTAAA
CTCAAGTTTCATCGGCAGCAAATTCTGCCCCGTTGAAACCACCCTGCTAACGAATGTATTACTGAGAACATGTCCAGGCGACCATCACTTACACAGTAAATGGTACATTCTGTGTGAAAAAATCAGGG
GGATAATGTGACCCTAACAACTTTGTCTACACTGGCAGTTTTGGTGAGAAAAAAACTTTAAACTACAATTTGTCTTATATCTTAACAGAAATAGGGGTGTCAGTTTGAACCTGTGTTGGTCTTGAGGT
GGCCTGTCCCTAATTTCAACTCCTCAGCTTTTGTCAGACTTTGATTGATAATCTGTTAAGGGTTTTGGCACTTTCAGGGCCTCGTCCTCTTCCATTTCTCCTCTCATTAAACTTCAGAGAAGAAA

hide sequence

RefSeq Acc Id:

NM_001377033 ⟹ NP_001363962

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,911,431 - 37,915,309 (+)	NCBI
GRCm38	1	37,872,350 - 37,876,228 (+)	NCBI

Sequence:

show sequence

AGTGAATTCTTTGCGGGTTGTGGAGGCACACGCTGAGCAGGAGTGGGTGCTGCGGAGAGCACGCGTGCGTCCCATGGGCCCCTCCTATTGGTTCTGAAAGCTCTGCAGATTACACCTGGTGCTCCGGA
CGTAATTTCATTATTGGGAACAGTTGATTTCTAATACGGCGTAGGGTAAACTAAACAAGACATTCAGTGCTAGTCGCGTGCCTGCTCCCGAAGAGTAAAGCTTGCTTAAAAGTTCGTAATCACTTCCA
GGTTTGGATCGCGTTATTAGGAGGATAGCAAATAGTTTTGGTAAGGCCTTGTGAGGAAGGTAGGCCTGTAGTTAGGTCTTGCTTTACACTCTGTCAGGGAGAAGCATGTGTTGGCAGTTGCAGAAGTG
TCTCCCAGAGCATGGAAGTAAGAGCCTCCTGAGGAAATAATTATAACACCAGTAATGAAGATGAAAGCAGAGAGCTGGGGGTGGATTGCTCGGCGGTACAGTTCAAACCTAGACTGACATGCTAATTC
CACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCAGCTGGCTTTAAAAGCCCACCCACACATGGGCTCATTTTACAGTCGATCTCCAATGATGTATATGAAAATCTGGCT
TTTGAAGACTGGATCCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCGTCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAACCTCCATCTGAT
GAGACAGGAAGGAATCAAACTGGCTCGGAGGAAGAGTGGAGGAGGAGCCGTGTACCACGACATGGGTAACATCAACCTCACCTTCTTTACCACCAAAACCAAGTATGACAGAATGGAAAATCTGAAAC
TAATCGTGAGAGCTCTGAATGCTGTCCAACCCCAGCTGGATGTGCAGCCTACCAAAAAGTTTGACCTGCTACTCGACGGGCAGTTTAAAATCTCAGGAACCGCATCAAAGATCGGCCGGACTGCCGCG
TACCACCACTGCACCTTGCTATGCAGCACCAACCGGACAGCTCTGTCTTCTTCGCTGAAGAGCCCGTACTGCGGGATAAAGAGCAACGCCACTCCCAGCATCCCTTCCGCTGTCAAAAACCTTCTGGA
AAGAGATTCCACGCTGACCTGTGAAGTTCTGATGAGTGCGGTGGCTGCAGAGTACGCGGCGCATCATCAAGTTGATGGTCACGTCAACCTAATAAACCCTGCAGATGAGACGATGTTCCCTGGAATAA
ACCGCAAAGTCAAGGAACTGCAAAGTTGGGAGTGGGTATACGGCAGGACTCCCAAGTTTACCGTGGACACCACGTTTCATGTGCCGTATGAGCAGGCGCATTTGGAAATCCAAGTGTTCATGGATGTA
AAGAACGGACGAATCGAAACCTGCGCTATTAAGGCACCCGATCACTGGCTGCCGCTGGAAATAGGTGAGAAATTAAACTCAAGTTTCATCGGCAGCAAATTCTGCCCCGTTGAAACCACCCTGCTAAC
GAATGTATTACTGAGAACATGTCCAGGCGACCATCACTTACACAGTAAATGGTACATTCTGTGTGAAAAAATCAGGGGGATAATGTGACCCTAACAACTTTGTCTACACTGGCAGTTTTGGTGAGAAA
AAAACTTTAAACTACAATTTGTCTTATATCTTAACAGAAATAGGGGTGTCAGTTTGAACCTGTGTTGGTCTTGAGGTGGCCTGTCCCTAATTTCAACTCCTCAGCTTTTGTCAGACTTTGATTGATAA
TCTGTTAAGGGTTTTGGCACTTTCAGGGCCTCGTCCTCTTCCATTTCTCCTCTCATTAAACTTCAGAGAAGAAA

hide sequence

RefSeq Acc Id:

NM_001377034 ⟹ NP_001363963

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	37,910,819 - 37,915,309 (+)	NCBI
GRCm38	1	37,871,738 - 37,876,228 (+)	NCBI

Sequence:

show sequence

TGAAGGAGGAGAGACTGGTTTCTGTGGAAGAGCGAGGAATGACCACAAATTCTTTGGGCTCTGCTCATCAAGAAGTGGGTCCGTGATCTCATTCCTTAACTCTAGTCTGGCTTTGTTGTTCCTGGGGC
CATAGGAATGCGGTTGAAGCGCTTCCAAGTGCCTTGAATCGAACCGCCCCAGCAGCTAGACAGCACCTCCTGAGTGTGAACAGACCATTTTGGACCACACAGTTTAGCCAACTCTTGCTGAAAGAAAC
CAGCATAGGAATCACCCAGCTCGTCTTTACATATTTTGCATGCTAATTCCACTTTCAATGAAGAATTGCTTCCGATTACTTTGTCAGCACAAGGTCCCAGCAGCTGGCTTTAAAAGCCCACCCACACA
TGGGCTCATTTTACAGTCGATCTCCAATGATGTATATGAAAATCTGGCTTTTGAAGACTGGATCCACGACCACATACATCTAGAAGGCAAGCCGATTCTTTTCCTTTGGAGAAATTCTCCTTCTGTCG
TCATCGGCAGGCATCAGAATCCGTGGCAGGAATGTAACCTCCATCTGATGAGACAGGAAGGAATCAAACTGGCTCGGAGGAAGAGTGGAGGAGGAGCCGTGTACCACGACATGGGTAACATCAACCTC
ACCTTCTTTACCACCAAAACCAAGTATGACAGAATGGAAAATCTGAAACTAATCGTGAGAGCTCTGAATGCTGTCCAACCCCAGCTGGATGTGCAGCCTACCAAAAAGTTTGACCTGCTACTCGACGG
GCAGTTTAAAATCTCAGGAACCGCATCAAAGATCGGCCGGACTGCCGCGTACCACCACTGCACCTTGCTATGCAGCACCAACCGGACAGCTCTGTCTTCTTCGCTGAAGAGCCCGTACTGCGGGATAA
AGAGCAACGCCACTCCCAGCATCCCTTCCGCTGTCAAAAACCTTCTGGAAAGAGATTCCACGCTGACCTGTGAAGTTCTGATGAGTGCGGTGGCTGCAGAGTACGCGGCGCATCATCAAGTTGATGGT
CACGTCAACCTAATAAACCCTGCAGATGAGACGATGTTCCCTGGAATAAACCGCAAAGTCAAGGAACTGCAAAGTTGGGAGTGGGTATACGGCAGGACTCCCAAGTTTACCGTGGACACCACGTTTCA
TGTGCCGTATGAGCAGGCGCATTTGGAAATCCAAGTGTTCATGGATGTAAAGAACGGACGAATCGAAACCTGCGCTATTAAGGCACCCGATCACTGGCTGCCGCTGGAAATAGGTGAGAAATTAAACT
CAAGTTTCATCGGCAGCAAATTCTGCCCCGTTGAAACCACCCTGCTAACGAATGTATTACTGAGAACATGTCCAGGCGACCATCACTTACACAGTAAATGGTACATTCTGTGTGAAAAAATCAGGGGG
ATAATGTGACCCTAACAACTTTGTCTACACTGGCAGTTTTGGTGAGAAAAAAACTTTAAACTACAATTTGTCTTATATCTTAACAGAAATAGGGGTGTCAGTTTGAACCTGTGTTGGTCTTGAGGTGG
CCTGTCCCTAATTTCAACTCCTCAGCTTTTGTCAGACTTTGATTGATAATCTGTTAAGGGTTTTGGCACTTTCAGGGCCTCGTCCTCTTCCATTTCTCCTCTCATTAAACTTCAGAGAAGAAA

hide sequence


Protein RefSeqs	NP_001033007	(Get FASTA)	NCBI Sequence Viewer
	NP_001363958	(Get FASTA)	NCBI Sequence Viewer
	NP_001363959	(Get FASTA)	NCBI Sequence Viewer
	NP_001363960	(Get FASTA)	NCBI Sequence Viewer
	NP_001363961	(Get FASTA)	NCBI Sequence Viewer
	NP_001363962	(Get FASTA)	NCBI Sequence Viewer
	NP_001363963	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH19519	(Get FASTA)	NCBI Sequence Viewer
	BAC33210	(Get FASTA)	NCBI Sequence Viewer
	EDL14531	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000038739
	ENSMUSP00000038739.4
GenBank Protein	Q8VCM4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001033007 ⟸ NM_001037918
- Peptide Label:	precursor
- UniProtKB:	Q8VCM4 (UniProtKB/Swiss-Prot), Q8C894 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLIPLSMKNCFRLLCQHKVPAAGFKSPPTHGLILQSISNDVYENLAFEDWIHDHIHLEGKPILFLWRNSPSVVIGRHQNPWQECNLHLMRQEGIKLARRKSGGGAVYHDMGNINLTFFTTKTKYDRME NLKLIVRALNAVQPQLDVQPTKKFDLLLDGQFKISGTASKIGRTAAYHHCTLLCSTNRTALSSSLKSPYCGIKSNATPSIPSAVKNLLERDSTLTCEVLMSAVAAEYAAHHQVDGHVNLINPADETMF PGINRKVKELQSWEWVYGRTPKFTVDTTFHVPYEQAHLEIQVFMDVKNGRIETCAIKAPDHWLPLEIGEKLNSSFIGSKFCPVETTLLTNVLLRTCPGDHHLHSKWYILCEKIRGIM hide sequence

RefSeq Acc Id:	NP_001363963 ⟸ NM_001377034
- Peptide Label:	precursor
- UniProtKB:	Q8VCM4 (UniProtKB/Swiss-Prot), Q8C894 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001363962 ⟸ NM_001377033
- Peptide Label:	precursor
- UniProtKB:	Q8VCM4 (UniProtKB/Swiss-Prot), Q8C894 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001363961 ⟸ NM_001377032
- Peptide Label:	precursor
- UniProtKB:	Q8VCM4 (UniProtKB/Swiss-Prot), Q8C894 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001363960 ⟸ NM_001377031
- Peptide Label:	precursor
- UniProtKB:	Q8VCM4 (UniProtKB/Swiss-Prot), Q8C894 (UniProtKB/TrEMBL)

Protein Domains

BPL/LPL catalytic

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VCM4-F1-model_v2	AlphaFold	Q8VCM4	1-373	view protein structure

RGD ID:

6873494

Promoter ID:

EPDNEW_M198

Type:

multiple initiation site

Name:

Lipt1_1

Description:

Mus musculus lipoyltransferase 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	37,872,219 - 37,872,279	EPDNEW

RGD ID:

6818035

Promoter ID:

MM_KWN:493

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, MEF_B4, MEF_B6

Transcripts:

ENSMUST00000041621, OTTMUST00000052447, OTTMUST00000052448, OTTMUST00000052449

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	37,928,571 - 37,929,422 (+)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000037216	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000041621	ENTREZGENE
	ENSMUST00000041621.5	UniProtKB/Swiss-Prot
Gene3D-CATH	Bira Bifunctional Protein, Domain 2	UniProtKB/Swiss-Prot
	CO dehydrogenase flavoprotein, C-terminal domain	UniProtKB/Swiss-Prot
InterPro	aa-tRNA-synth_II/BPL/LPL	UniProtKB/Swiss-Prot
	BPL_LPL_catalytic	UniProtKB/Swiss-Prot
	LipoylTrfase_LipoateP_Ligase	UniProtKB/Swiss-Prot
KEGG Report	mmu:623661	UniProtKB/Swiss-Prot
MGD	MGI:3645211	ENTREZGENE
NCBI Gene	623661	ENTREZGENE
PANTHER	LIPOYLTRANSFERASE 1, MITOCHONDRIAL	UniProtKB/Swiss-Prot
	PTHR12561	UniProtKB/Swiss-Prot
Pfam	LplA-B_cat	UniProtKB/Swiss-Prot
PhenoGen	Lipt1	PhenoGen
PROSITE	BPL_LPL_CATALYTIC	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF55681	UniProtKB/Swiss-Prot
UniProt	D3Z093_MOUSE	UniProtKB/TrEMBL
	D3Z2L3_MOUSE	UniProtKB/TrEMBL
	D3Z7N1_MOUSE	UniProtKB/TrEMBL
	LIPT_MOUSE	UniProtKB/Swiss-Prot
	Q8C894	ENTREZGENE, UniProtKB/TrEMBL
	Q8VCM4	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype