Lipt1 (lipoyltransferase 1) - Rat Genome Database

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Gene: Lipt1 (lipoyltransferase 1) Heterocephalus glaber
Analyze
Symbol: Lipt1
Name: lipoyltransferase 1
RGD ID: 18936554
Description: ENCODES a protein that exhibits lipoate-protein ligase activity (inferred); lipoyltransferase activity (inferred); transferase activity (inferred); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); Failure to Thrive (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Lipoyltransferase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,155,943 - 4,163,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,155,827 - 4,163,648 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lipt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,155,943 - 4,163,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,155,827 - 4,163,648 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LIPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38299,154,967 - 99,163,137 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl299,154,955 - 99,163,157 (+)EnsemblGRCh38hg38GRCh38
GRCh37299,771,430 - 99,779,600 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36299,137,850 - 99,146,043 (+)NCBINCBI36Build 36hg18NCBI36
Celera293,976,106 - 93,984,222 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,537,214 - 93,545,383 (+)NCBIHuRef
CHM1_1299,776,369 - 99,784,525 (+)NCBICHM1_1
T2T-CHM13v2.0299,613,838 - 99,622,016 (+)NCBIT2T-CHM13v2.0
Lipt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,910,819 - 37,915,309 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,910,819 - 37,915,309 (+)EnsemblGRCm39 Ensembl
GRCm38137,871,738 - 37,876,228 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,871,738 - 37,876,228 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,929,051 - 37,933,143 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,816,752 - 37,821,933 (+)NCBIMGSCv36mm8
Celera137,653,124 - 37,657,217 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map116.13NCBI
Lipt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,603,972 - 47,609,365 (+)NCBIGRCr8
mRatBN7.2940,107,938 - 40,118,268 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,098,615 - 40,113,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,604,043 - 48,609,412 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,726,798 - 53,732,167 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,008,904 - 52,014,263 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,466,627 - 44,471,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,466,627 - 44,471,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,164,007 - 44,169,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,822,120 - 36,827,479 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,825,135 - 36,827,380 (+)NCBI
Celera937,862,435 - 37,867,794 (+)NCBICelera
Cytogenetic Map9q21NCBI
Lipt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,480,279 - 5,492,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,480,279 - 5,492,259 (+)NCBIChiLan1.0ChiLan1.0
LIPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,264,381 - 29,277,632 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,266,189 - 29,280,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,136,392 - 100,144,665 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,083,711 - 100,091,689 (+)NCBIpanpan1.1PanPan1.1panPan2
C10H2orf15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,545,023 - 43,556,215 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,468,490 - 43,480,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,417,127 - 44,428,643 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11044,127,161 - 44,138,669 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,410,705 - 44,421,962 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,595,142 - 44,606,656 (-)NCBIUU_Cfam_GSD_1.0
Lipt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,923,893 - 84,929,911 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,638,036 - 1,645,607 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,640,255 - 1,645,588 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1355,176,387 - 55,177,508 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LIPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,865,856 - 2,887,132 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,885,887 - 2,886,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,458,562 - 170,489,721 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006795   ⟹   ENSHGLP00000006712
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247494,155,943 - 4,163,642 (+)Ensembl
RefSeq Acc Id: XM_004844423   ⟹   XP_004844480
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247494,155,827 - 4,163,648 (+)NCBI
RefSeq Acc Id: XM_013072128   ⟹   XP_012927582
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247494,155,833 - 4,163,648 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004844480   ⟸   XM_004844423
- UniProtKB: G5BMT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927582   ⟸   XM_013072128
- UniProtKB: G5BMT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006712   ⟸   ENSHGLT00000006795


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004904 Ensembl
  ENSHGLG00000034919 UniProtKB/TrEMBL
  ENSHGLG00100033039 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000006795 UniProtKB/TrEMBL
  ENSHGLT00000044755 UniProtKB/TrEMBL
  ENSHGLT00000056147 UniProtKB/TrEMBL
  ENSHGLT00000067350 UniProtKB/TrEMBL
  ENSHGLT00000068727 UniProtKB/TrEMBL
  ENSHGLT00000072367 UniProtKB/TrEMBL
  ENSHGLT00000080064 UniProtKB/TrEMBL
  ENSHGLT00000083468 UniProtKB/TrEMBL
  ENSHGLT00000088087 UniProtKB/TrEMBL
  ENSHGLT00100022392 UniProtKB/TrEMBL
  ENSHGLT00100048309 UniProtKB/TrEMBL
  ENSHGLT00100049528 UniProtKB/TrEMBL
  ENSHGLT00100060499 UniProtKB/TrEMBL
  ENSHGLT00100073614 UniProtKB/TrEMBL
  ENSHGLT00100074987 UniProtKB/TrEMBL
  ENSHGLT00100079872 UniProtKB/TrEMBL
  ENSHGLT00100092271 UniProtKB/TrEMBL
Gene3D-CATH CO dehydrogenase flavoprotein, C-terminal domain UniProtKB/TrEMBL
InterPro aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  BPL_LPL_catalytic UniProtKB/TrEMBL
  LipoylTrfase_LipoateP_Ligase UniProtKB/TrEMBL
KEGG Report hgl:101696353 UniProtKB/TrEMBL
NCBI Gene Lipt1 ENTREZGENE
PANTHER LIPOYLTRANSFERASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12561 UniProtKB/TrEMBL
PROSITE BPL_LPL_CATALYTIC UniProtKB/TrEMBL
Superfamily-SCOP SSF55681 UniProtKB/TrEMBL
UniProt G5BMT1 ENTREZGENE, UniProtKB/TrEMBL