LIPT1 (lipoyltransferase 1) - Rat Genome Database

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Gene: LIPT1 (lipoyltransferase 1) Chlorocebus sabaeus
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Symbol: LIPT1
Name: lipoyltransferase 1
RGD ID: 18457913
Description: ENCODES a protein that exhibits N-acyltransferase activity (ortholog); INVOLVED IN protein lipoylation (ortholog); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); Failure to Thrive (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipoyl amidotransferase LIPT1, mitochondrial; lipoyltransferase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,865,856 - 2,887,132 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,885,887 - 2,886,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,458,562 - 170,489,721 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LIPT1Green MonkeyCardiovascular Abnormalities  ISORGD:13210828554872ClinVar Annotator: match by term: Abnormality of cardiovascular system morphologyClinVarPMID:25741868|PMID:27247813|PMID:28492532
LIPT1Green MonkeyFailure to Thrive  ISORGD:13210828554872ClinVar Annotator: match by term: Failure to thriveClinVarPMID:25741868|PMID:27247813|PMID:28492532
LIPT1Green Monkeygenetic disease  ISORGD:13210828554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25326635|PMID:25741868|PMID:28492532|PMID:31042466|PMID:35388219
LIPT1Green MonkeyHearing Loss  ISORGD:13210828554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:25741868|PMID:27247813|PMID:28492532
LIPT1Green MonkeyLipoyltransferase 1 Deficiency  ISORGD:13210828554872ClinVar Annotator: match by term: LIPT1-related condition | ClinVar Annotator: match by term: Lipoyltransferase 1 more ...ClinVarPMID:17570395|PMID:24256811|PMID:24341803|PMID:25326635|PMID:25741868|PMID:27247813|PMID:28492532|PMID:31042466|PMID:34440436|PMID:35388219|PMID:38539105
LIPT1Green MonkeyMuscle Hypotonia  ISORGD:13210828554872ClinVar Annotator: match by term: poor muscle toneClinVarPMID:25741868|PMID:27247813|PMID:28492532
LIPT1Green Monkeyoptic nerve disease  ISORGD:13210828554872ClinVar Annotator: match by term: Abnormal optic nerve morphologyClinVarPMID:25741868|PMID:27247813|PMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LIPT1Green MonkeyLipoyltransferase 1 Deficiency  ISORGD:13210827240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LIPT1Green Monkeyprotein lipoylation involved_inISORGD:16162959068941 PMID:32804083MGIPMID:32804083
LIPT1Green Monkeyprotein lipoylation involved_inISOMGI:64489479068941 PMID:31042466, PMID:35388219MGIPMID:31042466|PMID:35388219

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LIPT1Green Monkeycytoplasm located_inIEAPANTHER:PTN002649651150520179 TreeGrafterGO_REF:0000118
LIPT1Green Monkeymitochondrion is_active_inISORGD:16162959068941 PMID:23077570MGIPMID:23077570
LIPT1Green Monkeymitochondrion located_inIEAPANTHER:PTN002649651150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LIPT1Green Monkeylipoyltransferase activity enablesIEAPANTHER:PTN002649651150520179 TreeGrafterGO_REF:0000118
LIPT1Green MonkeyN-acyltransferase activity enablesISORGD:16162959068941 PMID:32804083MGIPMID:32804083
LIPT1Green MonkeyN-acyltransferase activity enablesISOMGI:64489479068941 PMID:31042466MGIPMID:31042466
LIPT1Green Monkeyprotein binding enablesISOUniProtKB:P172529068941 PMID:33961781IntActPMID:33961781
LIPT1Green Monkeyprotein binding enablesISOUniProtKB:P13473-2|UniProtKB:P17252|UniProtKB:P55212|UniProtKB:P61981|UniProtKB:Q15047-2|UniProtKB:Q8TAP4-4|UniProtKB:Q929939068941 PMID:32814053IntActPMID:32814053

PMID:22301074   PMID:30032202  



LIPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,865,856 - 2,887,132 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,885,887 - 2,886,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,458,562 - 170,489,721 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LIPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38299,154,967 - 99,163,137 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl299,154,955 - 99,163,157 (+)EnsemblGRCh38hg38GRCh38
GRCh37299,771,430 - 99,779,600 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36299,137,850 - 99,146,043 (+)NCBINCBI36Build 36hg18NCBI36
Celera293,976,106 - 93,984,222 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,537,214 - 93,545,383 (+)NCBIHuRef
CHM1_1299,776,369 - 99,784,525 (+)NCBICHM1_1
T2T-CHM13v2.0299,613,838 - 99,622,016 (+)NCBIT2T-CHM13v2.0
Lipt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,910,819 - 37,915,309 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,910,819 - 37,915,309 (+)EnsemblGRCm39 Ensembl
GRCm38137,871,738 - 37,876,228 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,871,738 - 37,876,228 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,929,051 - 37,933,143 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,816,752 - 37,821,933 (+)NCBIMGSCv36mm8
Celera137,653,124 - 37,657,217 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map116.13NCBI
Lipt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,603,972 - 47,609,365 (+)NCBIGRCr8
mRatBN7.2940,107,938 - 40,118,268 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,098,615 - 40,113,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,604,043 - 48,609,412 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,726,798 - 53,732,167 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,008,904 - 52,014,263 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,466,627 - 44,471,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,466,627 - 44,471,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,164,007 - 44,169,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,822,120 - 36,827,479 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,825,135 - 36,827,380 (+)NCBI
Celera937,862,435 - 37,867,794 (+)NCBICelera
Cytogenetic Map9q21NCBI
Lipt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,480,279 - 5,492,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,480,279 - 5,492,259 (+)NCBIChiLan1.0ChiLan1.0
LIPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,264,381 - 29,277,632 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,266,189 - 29,280,392 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,136,392 - 100,144,665 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,083,711 - 100,091,689 (+)NCBIpanpan1.1PanPan1.1panPan2
C10H2orf15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,545,023 - 43,556,215 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,468,490 - 43,480,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,417,127 - 44,428,643 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11044,127,161 - 44,138,669 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,410,705 - 44,421,962 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,595,142 - 44,606,656 (-)NCBIUU_Cfam_GSD_1.0
Lipt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,923,893 - 84,929,911 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,638,036 - 1,645,607 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,640,255 - 1,645,588 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1355,176,387 - 55,177,508 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Lipt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,155,943 - 4,163,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,155,827 - 4,163,648 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in LIPT1
448 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20



Ensembl Acc Id: ENSCSAT00000019517   ⟹   ENSCSAP00000018935
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl142,885,887 - 2,886,987 (+)Ensembl
RefSeq Acc Id: XM_008008124   ⟹   XP_008006315
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,865,856 - 2,887,132 (+)NCBI
Vero_WHO_p1.0NW_023666041170,458,579 - 170,489,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008008125   ⟹   XP_008006316
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,865,856 - 2,887,132 (+)NCBI
Vero_WHO_p1.0NW_023666041170,458,562 - 170,489,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008008126   ⟹   XP_008006317
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1142,879,523 - 2,887,132 (+)NCBI
Vero_WHO_p1.0NW_023666041170,482,072 - 170,489,706 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038004195   ⟹   XP_037860123
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041170,473,682 - 170,489,721 (+)NCBI
Protein RefSeqs XP_008006315 (Get FASTA)   NCBI Sequence Viewer  
  XP_008006316 (Get FASTA)   NCBI Sequence Viewer  
  XP_008006317 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018935.1
RefSeq Acc Id: XP_008006315   ⟸   XM_008008124
RefSeq Acc Id: XP_008006316   ⟸   XM_008008125
RefSeq Acc Id: XP_008006317   ⟸   XM_008008126
Ensembl Acc Id: ENSCSAP00000018935   ⟸   ENSCSAT00000019517
RefSeq Acc Id: XP_037860123   ⟸   XM_038004195



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000019427 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019517.1 UniProtKB/TrEMBL
Gene3D-CATH Bira Bifunctional Protein, Domain 2 UniProtKB/TrEMBL
  CO dehydrogenase flavoprotein, C-terminal domain UniProtKB/TrEMBL
InterPro aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  BPL_LPL_catalytic UniProtKB/TrEMBL
  LipoylTrfase_LipoateP_Ligase UniProtKB/TrEMBL
KEGG Report csab:103241103 UniProtKB/TrEMBL
NCBI Gene LIPT1 ENTREZGENE
PANTHER LIPOYLTRANSFERASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12561 UniProtKB/TrEMBL
Pfam LplA-B_cat UniProtKB/TrEMBL
PROSITE BPL_LPL_CATALYTIC UniProtKB/TrEMBL
Superfamily-SCOP SSF55681 UniProtKB/TrEMBL
UniProt A0A0D9SDJ6_CHLSB UniProtKB/TrEMBL
1 to 15 of 15 rows