NIPBL (NIPBL cohesin loading factor) - Rat Genome Database

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Gene: NIPBL (NIPBL cohesin loading factor) Homo sapiens
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Symbol: NIPBL
Name: NIPBL cohesin loading factor
RGD ID: 1604032
HGNC Page HGNC:28862
Description: Enables several functions, including chromo shadow domain binding activity; cohesin loader activity; and histone deacetylase binding activity. Involved in several processes, including cellular response to X-ray; embryonic morphogenesis; and reproductive structure development. Located in cytosol and nucleoplasm. Part of Scc2-Scc4 cohesin loading complex. Implicated in Cornelia de Lange syndrome and Cornelia de Lange syndrome 1.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CDLS; CDLS1; delangin; DKFZp434L1319; FLJ11203; FLJ12597; FLJ13354; FLJ13648; FLJ44854; IDN3; IDN3-B; NIPBL, cohesin loading factor; Nipped-B homolog; Nipped-B homolog (Drosophila); nipped-B-like protein; Scc2; SCC2 homolog; sister chromatid cohesion 2 homolog
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38536,876,769 - 37,066,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl536,876,769 - 37,066,413 (+)EnsemblGRCh38hg38GRCh38
GRCh37536,876,871 - 37,066,515 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36536,912,742 - 37,101,678 (+)NCBINCBI36Build 36hg18NCBI36
Celera536,763,790 - 36,952,889 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef536,829,492 - 37,018,602 (+)NCBIHuRef
CHM1_1536,879,597 - 37,068,738 (+)NCBICHM1_1
T2T-CHM13v2.0537,126,599 - 37,316,247 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
NIPBLHumanCornelia de Lange syndrome severityIAGP 155630600DNA:mutations:cds:RGD 
NIPBLHumanCornelia de Lange syndrome  ISONipbl (Mus musculus)155630598 RGD 
NIPBLHumanCornelia de Lange syndrome  IAGP 155630599DNA:mutations:cds:RGD 
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NIPBLHumanbrachydactyly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: BrachydactylyClinVarPMID:25741868
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVar 
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Brachmann de Lange syndromeClinVarPMID:25741868 and PMID:28492532
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar more ...ClinVarPMID:18414213
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:18414213 and PMID:28492532
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Brachmann de Lange syndromeClinVarPMID:25741868 and PMID:28492532
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:18414213 and PMID:25741868
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:16199547 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Brachmann de Lange syndromeClinVarPMID:25741868 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:15318302 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:15318302 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Brachmann de Lange syndromeClinVarPMID:15318302 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Brachmann de Lange syndromeClinVarPMID:25125236 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:15318302 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:15318302 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:25741868 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:20824775 more ...
NIPBLHumanCornelia de Lange syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Typus degenerativus amstelodamensisClinVarPMID:15318302 more ...
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Original Reference(s)
NIPBLHumanbone development disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19763162
NIPBLHumanChromosome Breakage  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:35435490
NIPBLHumancongenital heart disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19763162
NIPBLHumanCornelia de Lange syndrome  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19763162 more ...
NIPBLHumanCraniofacial Abnormalities  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19763162
NIPBLHumanHearing Disorders  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19763162
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Original Reference(s)
NIPBLHumanCornelia de Lange syndrome 1  ISSNipbl (Mus musculus)13592920OMIM:122470MouseDO 
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Original Reference(s)
NIPBLHumanCornelia de Lange syndrome 1  IAGP 7240710 OMIM 

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Original Reference(s)
NIPBLHuman1,2-dimethylhydrazine decreases expressionISONipbl (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NIPBL mRNACTDPMID:22206623
NIPBLHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISONipbl (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of NIPBL mRNACTDPMID:21570461
NIPBLHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISONipbl (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of NIPBL mRNACTDPMID:32109520 and PMID:34747641
NIPBLHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISONipbl (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of NIPBL mRNACTDPMID:19465110
NIPBLHuman2,4,6-tribromophenol increases expressionEXP 64804642 more ...CTDPMID:31675489
NIPBLHuman3,3',5,5'-tetrabromobisphenol A increases expressionEXP 6480464tetrabromobisphenol A results in increased expression of NIPBL proteinCTDPMID:31675489
NIPBLHuman4,4'-sulfonyldiphenol decreases expressionISONipbl (Mus musculus)6480464bisphenol S results in decreased expression of NIPBL mRNACTDPMID:39298647
NIPBLHuman4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one increases expressionEXP 64804644-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone results in increased expression of NIPBL mRNA alternative formCTDPMID:35435490
NIPBLHuman4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one increases response to substanceEXP 6480464NIPBL mRNA alternative form results in increased susceptibility to 4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanoneCTDPMID:35435490
NIPBLHuman4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one multiple interactionsEXP 6480464NIPBL mRNA alternative form promotes the reaction [4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone results in decreased expression of FEN1 protein] more ...CTDPMID:35435490
NIPBLHuman6-propyl-2-thiouracil decreases expressionISONipbl (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of NIPBL mRNACTDPMID:30047161
NIPBLHumanacrylamide increases expressionISONipbl (Rattus norvegicus)6480464Acrylamide results in increased expression of NIPBL mRNACTDPMID:28959563
NIPBLHumanafimoxifene affects response to substanceEXP 6480464NIPBL gene affects the susceptibility to afimoxifeneCTDPMID:21482774
NIPBLHumanaflatoxin B1 increases expressionISONipbl (Mus musculus)6480464Aflatoxin B1 results in increased expression of NIPBL mRNACTDPMID:19770486
NIPBLHumanall-trans-retinoic acid decreases expressionEXP 6480464Tretinoin results in decreased expression of NIPBL mRNACTDPMID:21934132
NIPBLHumanamitrole decreases expressionISONipbl (Rattus norvegicus)6480464Amitrole results in decreased expression of NIPBL mRNACTDPMID:30047161
NIPBLHumanantirheumatic drug decreases expressionEXP 6480464Antirheumatic Agents results in decreased expression of NIPBL mRNACTDPMID:24449571
NIPBLHumanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of NIPBL mRNACTDPMID:33212167
NIPBLHumanAroclor 1254 decreases expressionISONipbl (Mus musculus)6480464Chlorodiphenyl (54% Chlorine) results in decreased expression of NIPBL mRNACTDPMID:23650126
NIPBLHumanatrazine affects methylationISONipbl (Rattus norvegicus)6480464Atrazine affects the methylation of NIPBL geneCTDPMID:28931070

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Biological Process
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Original Reference(s)
NIPBLHumanbrain development involved_inIBAPANTHER:PTN002729525 and UniProtKB:Q6KC79150520179 GO_CentralGO_REF:0000033
NIPBLHumanbrain development involved_inIMP 150520179 PMID:8291537BHF-UCLPMID:8291537
NIPBLHumancellular response to X-ray involved_inIMP 150520179 PMID:17468178UniProtPMID:17468178
NIPBLHumanchromatin looping involved_inIEAInterPro:IPR033031150520179 InterProGO_REF:0000002
NIPBLHumanchromatin remodeling involved_inIDA 150520179 PMID:18854353BHF-UCLPMID:18854353
NIPBLHumancognition involved_inIMP 150520179 PMID:15146186BHF-UCLPMID:15146186
NIPBLHumandevelopmental growth involved_inIMP 150520179 PMID:15146186BHF-UCLPMID:15146186
NIPBLHumandigestive tract development involved_inIBAPANTHER:PTN002729525 more ...150520179 GO_CentralGO_REF:0000033
NIPBLHumanDNA damage response involved_inIMP 150520179 PMID:17468178UniProtPMID:17468178
NIPBLHumanear morphogenesis involved_inIMP 150520179 PMID:8291537BHF-UCLPMID:8291537
NIPBLHumanembryonic cranial skeleton morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumanembryonic digestive tract morphogenesis involved_inIMP 150520179 PMID:19242925 and PMID:8291537BHF-UCLPMID:19242925 and PMID:8291537
NIPBLHumanembryonic forelimb morphogenesis involved_inIMP 150520179 PMID:19242925 and PMID:8291537BHF-UCLPMID:19242925 and PMID:8291537
NIPBLHumanembryonic viscerocranium morphogenesis involved_inIBAMGI:1913976 more ...150520179 GO_CentralGO_REF:0000033
NIPBLHumanembryonic viscerocranium morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumanestablishment of mitotic sister chromatid cohesion involved_inIBAPANTHER:PTN000496017 and SGD:S000002588150520179 GO_CentralGO_REF:0000033
NIPBLHumanestablishment of protein localization to chromatin involved_inIBAPANTHER:PTN000496017 and SGD:S000002588150520179 GO_CentralGO_REF:0000033
NIPBLHumanexternal genitalia morphogenesis involved_inIMP 150520179 PMID:15146186 and PMID:19242925BHF-UCLPMID:15146186 and PMID:19242925
NIPBLHumaneye morphogenesis involved_inIMP 150520179 PMID:8291537BHF-UCLPMID:8291537
NIPBLHumanface morphogenesis involved_inIMP 150520179 PMID:15146186 and PMID:19242925BHF-UCLPMID:15146186 and PMID:19242925
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Cellular Component
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NIPBLHumanchromatin located_inIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumanchromosome located_inIEAUniProtKB-KW:KW-0158150520179 UniProtGO_REF:0000043
NIPBLHumanchromosome located_inIEAUniProtKB-SubCell:SL-0468150520179 UniProtGO_REF:0000044
NIPBLHumancytosol located_inIDA 150520179 HPAGO_REF:0000052
NIPBLHumanextracellular exosome located_inHDA 150520179 PMID:19056867UniProtPMID:19056867
NIPBLHumanintegrator complex part_ofISSUniProtKB:Q6KCD5150520179 UniProtGO_REF:0000024
NIPBLHumanintegrator complex part_ofIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumanintracellular membrane-bounded organelle located_inIDA 150520179 HPAGO_REF:0000052
NIPBLHumannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
NIPBLHumannucleoplasm located_inTAS 150520179 ReactomeReactome:R-HSA-2470935
NIPBLHumannucleus located_inIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
NIPBLHumannucleus located_inIDA 150520179 PMID:16802858UniProtPMID:16802858
NIPBLHumannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
NIPBLHumanScc2-Scc4 cohesin loading complex part_ofIDA 150520179 PMID:22628566UniProtPMID:22628566
NIPBLHumanScc2-Scc4 cohesin loading complex part_ofIBAPANTHER:PTN000496017 more ...150520179 GO_CentralGO_REF:0000033
NIPBLHumanSMC loading complex part_ofIDA 150520179 PMID:16682347UniProtPMID:16682347
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Molecular Function
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Original Reference(s)
NIPBLHumanchromatin binding enablesIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumanchromatin binding enablesIBAFB:FBgn0026401 more ...150520179 GO_CentralGO_REF:0000033
NIPBLHumanchromo shadow domain binding enablesIPIUniProtKB:P45973150520179 PMID:15882967BHF-UCLPMID:15882967
NIPBLHumancohesin loader activity enablesIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumancohesin loader activity enablesIEAInterPro:IPR033031150520179 InterProGO_REF:0000002
NIPBLHumancohesin loader activity enablesIMP 150520179 PMID:22628566UniProtPMID:22628566
NIPBLHumanhistone deacetylase binding enablesIPIUniProtKB:O15379 and UniProtKB:Q13547150520179 PMID:18854353BHF-UCLPMID:18854353
NIPBLHumanmediator complex binding enablesIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumanpromoter-specific chromatin binding enablesISSUniProtKB:Q6KCD5150520179 ARUK-UCLGO_REF:0000024
NIPBLHumanpromoter-specific chromatin binding enablesIEAUniProtKB:Q6KCD5 and ensembl:ENSMUSP00000059385150520179 EnsemblGO_REF:0000107
NIPBLHumanprotein binding enablesIPIUniProtKB:Q9Y6X3150520179 PMID:16682347 more ...UniProtPMID:16682347 more ...
NIPBLHumanprotein binding enablesIPIUniProtKB:Q9BQA5150520179 PMID:17577209UniProtPMID:17577209
NIPBLHumantranscription corepressor activity enablesIDA 150520179 PMID:18854353BHF-UCLPMID:18854353
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Original Reference(s)
NIPBLHuman2-3 toe syndactyly  IAGP 8699517 HPOMIM:122470
NIPBLHumanAbnormal cardiovascular system morphology  IAGP 8699517 HPOORPHA:199
NIPBLHumanAbnormal incisura morphology  IAGP 8699517 HPOMIM:122470
NIPBLHumanAbnormal morphology of ulna  IAGP 8699517 HPOORPHA:199
NIPBLHumanAbnormal speech pattern  IAGP 8699517 HPOORPHA:199
NIPBLHumanAbnormality of the uterus  IAGP 8699517 HPOORPHA:199
NIPBLHumanAbnormally low-pitched voice  IAGP 8699517 HPOORPHA:199
NIPBLHumanAggressive behavior  IAGP 8699517 HPOMIM:122470
NIPBLHumanAnal atresia  IAGP 8699517 HPOMIM:122470
NIPBLHumanAnteriorly placed anus  IAGP 8699517 HPOMIM:122470
NIPBLHumanAnteverted nares  IAGP 8699517 HPOMIM:122470
NIPBLHumanAnteverted nares  IAGP 8699517 HPOORPHA:199
NIPBLHumanAnxiety  IAGP 8699517 HPOMIM:122470
NIPBLHumanAnxiety  IAGP 8699517 HPOORPHA:199
NIPBLHumanAplasia/Hypoplasia of the cerebellum  IAGP 8699517 HPOORPHA:199
NIPBLHumanAstigmatism  IAGP 8699517 HPOMIM:122470
NIPBLHumanAtresia of the external auditory canal  IAGP 8699517 HPOORPHA:199
NIPBLHumanAtrial septal defect  IAGP 8699517 HPOMIM:122470
NIPBLHumanAtrial septal defect  IAGP 8699517 HPOORPHA:199
NIPBLHumanAttention deficit hyperactivity disorder  IAGP 8699517 HPOMIM:122470
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NIPBLHumanAbnormal brain morphology  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormality of brain morphologyClinVarPMID:15318302 more ...
NIPBLHumanBrachydactyly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: BrachydactylyClinVarPMID:25741868
NIPBLHumanCongenital diaphragmatic hernia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Diaphragmatic herniaClinVarPMID:25741868
NIPBLHumanCryptorchidism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CryptorchidismClinVarPMID:25741868
NIPBLHumanGlobal developmental delay  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:25741868
NIPBLHumanGlobal developmental delay  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:28492532
NIPBLHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
NIPBLHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
NIPBLHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
NIPBLHumanIntellectual disability  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
NIPBLHumanIntrauterine growth retardation  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Prenatal-onset growth retardationClinVarPMID:25741868
NIPBLHumanLong philtrum  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Vertical hyperplasia of philtrumClinVarPMID:25741868
NIPBLHumanMicroretrognathia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: RetromicrognathiaClinVarPMID:25741868
NIPBLHumanNephronophthisis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: NephronophthisisClinVar 
NIPBLHumanNeurodevelopmental delay  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental delayClinVarPMID:16199547 more ...
NIPBLHumanPenile hypospadias  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hypospadias and penileClinVarPMID:25741868
NIPBLHumanPlagiocephaly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: PlagiocephalyClinVarPMID:30311386
NIPBLHumanPulmonary hypoplasia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pulmonary hypoplasiaClinVarPMID:25741868
NIPBLHumanRight ventricular hypertrophy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Heart right ventricle hypertrophyClinVarPMID:25741868
NIPBLHumanSingle umbilical artery  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Single umbilical arteryClinVarPMID:25741868
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Reference Title
Reference Citation
1. NIPBL expression levels in CdLS probands as a predictor of mutation type and phenotypic severity. Kaur M, etal., Am J Med Genet C Semin Med Genet. 2016 Jun;172(2):163-70. doi: 10.1002/ajmg.c.31495. Epub 2016 Apr 29.
2. Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange Syndrome. Kawauchi S, etal., PLoS Genet. 2009 Sep;5(9):e1000650. doi: 10.1371/journal.pgen.1000650. Epub 2009 Sep 18.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
7. Intragenic and large NIPBL rearrangements revealed by MLPA in Cornelia de Lange patients. Russo S, etal., Eur J Hum Genet. 2012 Jul;20(7):734-41. doi: 10.1038/ejhg.2012.7. Epub 2012 Feb 22.
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PMID:8291537   PMID:12477932   PMID:14702039   PMID:15146185   PMID:15146186   PMID:15146197   PMID:15302935   PMID:15318302   PMID:15489334   PMID:15591270   PMID:15635413   PMID:15882967  
PMID:16100726   PMID:16169070   PMID:16236812   PMID:16565220   PMID:16682347   PMID:16802858   PMID:16964243   PMID:17081983   PMID:17106445   PMID:17264868   PMID:17468178   PMID:17577209  
PMID:17661813   PMID:18299561   PMID:18854353   PMID:19052029   PMID:19056867   PMID:19242925   PMID:19468298   PMID:20124326   PMID:20301283   PMID:20301533   PMID:20358602   PMID:20360068  
PMID:20431927   PMID:20467437   PMID:20562864   PMID:20634891   PMID:20720539   PMID:20727427   PMID:20824775   PMID:20850016   PMID:21784059   PMID:21873635   PMID:21934712   PMID:22094256  
PMID:22174317   PMID:22241092   PMID:22586326   PMID:22628566   PMID:22857006   PMID:22939629   PMID:22965847   PMID:23085304   PMID:23251661   PMID:23254390   PMID:23505322   PMID:23508102  
PMID:23760082   PMID:23912250   PMID:24136230   PMID:24145515   PMID:24189319   PMID:24218399   PMID:24332808   PMID:24457600   PMID:24550742   PMID:24711643   PMID:24918291   PMID:24999758  
PMID:25184681   PMID:25196272   PMID:25447906   PMID:25963978   PMID:26176819   PMID:26299517   PMID:26344197   PMID:26437745   PMID:26496610   PMID:26674342   PMID:26701315   PMID:26725122  
PMID:26925417   PMID:26949251   PMID:27797076   PMID:28167679   PMID:28241484   PMID:28242625   PMID:28425213   PMID:28472652   PMID:28514442   PMID:28515276   PMID:28548707   PMID:28794006  
PMID:28914604   PMID:28987049   PMID:29117863   PMID:29155047   PMID:29261648   PMID:29348408   PMID:29379197   PMID:29395067   PMID:29452578   PMID:29467282   PMID:29478914   PMID:29507755  
PMID:29509190   PMID:29531005   PMID:29611806   PMID:29764989   PMID:29955894   PMID:30096364   PMID:30098241   PMID:30224337   PMID:30404004   PMID:30463901   PMID:30554943   PMID:30606125  
1 to 10 of 16 rows



NIPBL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38536,876,769 - 37,066,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl536,876,769 - 37,066,413 (+)EnsemblGRCh38hg38GRCh38
GRCh37536,876,871 - 37,066,515 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36536,912,742 - 37,101,678 (+)NCBINCBI36Build 36hg18NCBI36
Celera536,763,790 - 36,952,889 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef536,829,492 - 37,018,602 (+)NCBIHuRef
CHM1_1536,879,597 - 37,068,738 (+)NCBICHM1_1
T2T-CHM13v2.0537,126,599 - 37,316,247 (+)NCBIT2T-CHM13v2.0
Nipbl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,319,308 - 8,494,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,320,101 - 8,473,947 (-)EnsemblGRCm39 Ensembl
GRCm38158,289,824 - 8,465,315 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,290,617 - 8,444,463 (-)EnsemblGRCm38mm10GRCm38
MGSCv37158,241,225 - 8,394,463 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,238,440 - 8,391,678 (-)NCBIMGSCv36mm8
Celera158,136,258 - 8,289,610 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
Nipbl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,126,676 - 59,314,841 (-)NCBIGRCr8
mRatBN7.2257,399,443 - 57,586,770 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl257,399,445 - 57,565,899 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0257,508,830 - 57,676,197 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,509,428 - 57,600,820 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0278,992,721 - 79,160,884 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4257,908,828 - 58,099,422 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1257,837,538 - 58,006,254 (-)NCBI
Celera253,014,297 - 53,179,686 (-)NCBICelera
Cytogenetic Map2q16NCBI
Nipbl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,666,857 - 21,841,515 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542621,666,958 - 21,841,515 (+)NCBIChiLan1.0ChiLan1.0
NIPBL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2473,270,202 - 73,457,542 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1571,423,834 - 71,611,174 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0573,306,527 - 73,491,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1578,585,649 - 78,772,665 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl578,585,649 - 78,698,184 (-)Ensemblpanpan1.1panPan2
NIPBL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1471,583,118 - 71,780,986 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl471,583,732 - 71,780,852 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,193,245 - 71,390,556 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0472,093,046 - 72,290,807 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl472,093,358 - 72,290,830 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1471,840,270 - 72,037,537 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0471,962,190 - 72,159,916 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0472,493,866 - 72,691,524 (-)NCBIUU_Cfam_GSD_1.0
Nipbl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213226,330,734 - 226,501,147 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365184,869,546 - 4,969,450 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365184,870,686 - 5,041,099 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPBL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1622,152,469 - 22,363,821 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11622,152,455 - 22,364,373 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21623,393,877 - 23,512,467 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NIPBL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,748,112 - 35,940,075 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl435,829,386 - 35,941,271 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607126,085,896 - 26,277,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nipbl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475917,899,152 - 17,999,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475917,899,152 - 18,078,213 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in NIPBL
1860 total Variants

1 to 10 of 2171 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_133433.4(NIPBL):c.2595dup (p.Leu866fs) duplication Cornelia de Lange syndrome 1 [RCV000553774] Chr5:36985772..36985773 [GRCh38]
Chr5:36985874..36985875 [GRCh37]
Chr5:5p13.2
pathogenic
NM_133433.4(NIPBL):c.4203A>G (p.Leu1401=) single nucleotide variant Cornelia de Lange syndrome 1 [RCV001457247] Chr5:37007438 [GRCh38]
Chr5:37007540 [GRCh37]
Chr5:5p13.2
likely benign
NM_133433.4(NIPBL):c.3583G>A (p.Asp1195Asn) single nucleotide variant not specified [RCV000516385] Chr5:37000997 [GRCh38]
Chr5:37001099 [GRCh37]
Chr5:5p13.2
uncertain significance
NM_133433.4(NIPBL):c.2T>A (p.Met1Lys) single nucleotide variant Cornelia de Lange syndrome 1 [RCV000002221]|not provided [RCV004700178] Chr5:36953698 [GRCh38]
Chr5:36953800 [GRCh37]
Chr5:5p13.2
pathogenic|likely pathogenic
NM_133433.4(NIPBL):c.7289A>G (p.Tyr2430Cys) single nucleotide variant Cornelia de Lange syndrome 1 [RCV000002222] Chr5:37057211 [GRCh38]
Chr5:37057313 [GRCh37]
Chr5:5p13.2
pathogenic
NM_133433.4(NIPBL):c.150del (p.Asn51fs) deletion Cornelia de Lange syndrome 1 [RCV000002223] Chr5:36955557 [GRCh38]
Chr5:36955659 [GRCh37]
Chr5:5p13.2
pathogenic
NM_133433.4(NIPBL):c.7306dup (p.Ala2436fs) duplication Cornelia de Lange syndrome 1 [RCV000002224] Chr5:37057227..37057228 [GRCh38]
Chr5:37057329..37057330 [GRCh37]
Chr5:5p13.2
pathogenic
NM_133433.4(NIPBL):c.1547dup (p.Ala517fs) duplication Cornelia de Lange syndrome 1 [RCV000002225] Chr5:36984722..36984723 [GRCh38]
Chr5:36984824..36984825 [GRCh37]
Chr5:5p13.2
pathogenic
NM_133433.4(NIPBL):c.3616_3618del (p.Ile1206del) deletion Cornelia de Lange syndrome 1 [RCV000002226] Chr5:37001029..37001031 [GRCh38]
Chr5:37001131..37001133 [GRCh37]
Chr5:5p13.2
pathogenic
NIPBL, 2-BP DEL, 2479AG deletion Cornelia de Lange syndrome 1 [RCV000002227] Chr5:5p13.1 pathogenic
1 to 10 of 2171 rows

Predicted Target Of
Summary Value
Count of predictions:1068
Count of miRNA genes:633
Interacting mature miRNAs:745
Transcripts:ENST00000282516, ENST00000448238, ENST00000503274, ENST00000504430, ENST00000505998, ENST00000509429, ENST00000513819, ENST00000514335
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597081238GWAS1177312_HSelf-injurious behavior QTL GWAS1177312 (human)0.000004Self-injurious behavior53703356037033561Human
407045154GWAS694130_Hphysical activity QTL GWAS694130 (human)0.000007physical activity53690074136900742Human
597591419GWAS1648279_HMyoclonus QTL GWAS1648279 (human)1e-14Myoclonus53692696636926967Human
597060671GWAS1156745_Hadolescent idiopathic scoliosis QTL GWAS1156745 (human)7e-09adolescent idiopathic scoliosis53698254636982547Human
597042812GWAS1138886_Happendicular lean mass QTL GWAS1138886 (human)2e-13appendicular lean mass53701284337012844Human
597200259GWAS1296333_Hlean body mass QTL GWAS1296333 (human)3e-15body lean mass (VT:0010483)total body lean mass (CMO:0003950)53701284337012844Human
597070717GWAS1166791_Hbody weight QTL GWAS1166791 (human)0.000001body mass (VT:0001259)body weight (CMO:0000012)53704352637043527Human

RH65882  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37536,993,508 - 36,993,634UniSTSGRCh37
Build 36537,029,265 - 37,029,391RGDNCBI36
Celera536,880,476 - 36,880,602RGD
Cytogenetic Map5p13.2UniSTS
HuRef536,946,182 - 36,946,308UniSTS
GeneMap99-GB4 RH Map5128.67UniSTS
NCBI RH Map5175.4UniSTS
RH47582  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37537,065,546 - 37,065,717UniSTSGRCh37
Build 36537,101,303 - 37,101,474RGDNCBI36
Celera536,952,514 - 36,952,685RGD
Cytogenetic Map5p13.2UniSTS
HuRef537,018,227 - 37,018,398UniSTS
GeneMap99-GB4 RH Map5128.67UniSTS
NCBI RH Map5175.4UniSTS
RH76750  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37537,065,320 - 37,065,420UniSTSGRCh37
Build 36537,101,077 - 37,101,177RGDNCBI36
Celera536,952,288 - 36,952,388RGD
Cytogenetic Map5p13.2UniSTS
HuRef537,018,001 - 37,018,101UniSTS
RH119355  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37536,986,598 - 36,986,871UniSTSGRCh37
Build 36537,022,355 - 37,022,628RGDNCBI36
Celera536,873,557 - 36,873,830RGD
Cytogenetic Map5p13.2UniSTS
HuRef536,939,264 - 36,939,537UniSTS
TNG Radiation Hybrid Map516375.0UniSTS
D5S1878  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37537,063,771 - 37,063,870UniSTSGRCh37
GRCh37537,063,716 - 37,063,849UniSTSGRCh37
Build 36537,099,528 - 37,099,627RGDNCBI36
Celera536,950,739 - 36,950,838RGD
Celera536,950,684 - 36,950,817UniSTS
Cytogenetic Map5p13.2UniSTS
HuRef537,016,452 - 37,016,551UniSTS
HuRef537,016,397 - 37,016,530UniSTS
Whitehead-YAC Contig Map5 UniSTS
NIPBL_7249  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37537,065,178 - 37,066,060UniSTSGRCh37
Build 36537,100,935 - 37,101,817RGDNCBI36
Celera536,952,146 - 36,953,028RGD
HuRef537,017,859 - 37,018,741UniSTS
WI-18161  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37536,897,863 - 36,897,990UniSTSGRCh37
Build 36536,933,620 - 36,933,747RGDNCBI36
Celera536,784,797 - 36,784,924RGD
Cytogenetic Map5p13.2UniSTS
HuRef536,850,501 - 36,850,628UniSTS
GeneMap99-GB4 RH Map5124.47UniSTS
Whitehead-RH Map5132.3UniSTS
SGC44479  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37536,963,042 - 36,963,335UniSTSGRCh37
Build 36536,998,799 - 36,999,092RGDNCBI36
Celera536,849,996 - 36,850,289RGD
Cytogenetic Map5p13.2UniSTS
HuRef536,915,702 - 36,915,995UniSTS
Whitehead-RH Map5143.7UniSTS
MARC_21845-21846:1025102921:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37536,961,621 - 36,962,284UniSTSGRCh37
Build 36536,997,378 - 36,998,041RGDNCBI36
Celera536,848,575 - 36,849,238RGD
HuRef536,914,281 - 36,914,944UniSTS
L17705  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map18q21.31UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map11q12UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map4p16UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map3q21.3UniSTS
D5S1878  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5p13.2UniSTS
Whitehead-YAC Contig Map5 UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2438 2788 2252 4973 1726 2351 5 624 1951 465 2269 7302 6469 53 3734 1 852 1744 1617 175 1


1 to 30 of 49 rows
RefSeq Transcripts NG_006987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054352327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054352328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054352329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054352330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054352331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054352332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA508213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC026741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ627032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ640137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY726600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 49 rows

Ensembl Acc Id: ENST00000282516   ⟹   ENSP00000282516
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl536,876,769 - 37,066,413 (+)Ensembl
Ensembl Acc Id: ENST00000448238   ⟹   ENSP00000406266
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl536,876,790 - 37,064,190 (+)Ensembl
Ensembl Acc Id: ENST00000503274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl536,995,150 - 37,000,506 (+)Ensembl
Ensembl Acc Id: ENST00000504430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl536,961,506 - 36,997,002 (+)Ensembl
Ensembl Acc Id: ENST00000505998
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl536,954,968 - 36,975,897 (+)Ensembl
Ensembl Acc Id: ENST00000509429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl536,995,750 - 36,997,002 (+)Ensembl
Ensembl Acc Id: ENST00000513819   ⟹   ENSP00000421504
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl537,058,903 - 37,063,978 (+)Ensembl
Ensembl Acc Id: ENST00000514335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl537,050,943 - 37,065,502 (+)Ensembl
Ensembl Acc Id: ENST00000652901   ⟹   ENSP00000499536
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl536,876,841 - 37,065,394 (+)Ensembl
RefSeq Acc Id: NM_015384   ⟹   NP_056199
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 37,065,819 (+)NCBI
GRCh37536,876,861 - 37,065,926 (+)NCBI
Build 36536,912,742 - 37,100,057 (+)NCBI Archive
HuRef536,829,492 - 37,018,602 (+)ENTREZGENE
CHM1_1536,879,597 - 37,068,738 (+)NCBI
T2T-CHM13v2.0537,126,599 - 37,315,653 (+)NCBI
Sequence:
RefSeq Acc Id: NM_133433   ⟹   NP_597677
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 37,066,413 (+)NCBI
GRCh37536,876,861 - 37,065,926 (+)NCBI
Build 36536,912,742 - 37,101,678 (+)NCBI Archive
HuRef536,829,492 - 37,018,602 (+)ENTREZGENE
CHM1_1536,879,597 - 37,068,738 (+)NCBI
T2T-CHM13v2.0537,126,599 - 37,316,247 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005248280   ⟹   XP_005248337
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 37,066,413 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005248282   ⟹   XP_005248339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,971,037 - 37,066,413 (+)NCBI
GRCh37536,876,861 - 37,065,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714467   ⟹   XP_006714530
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 37,066,413 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714468   ⟹   XP_006714531
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 37,066,413 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011514015   ⟹   XP_011512317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 37,060,986 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009329   ⟹   XP_016864818
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 37,066,413 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054352327   ⟹   XP_054208302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0537,126,599 - 37,316,247 (+)NCBI
RefSeq Acc Id: XM_054352328   ⟹   XP_054208303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0537,126,599 - 37,316,247 (+)NCBI
RefSeq Acc Id: XM_054352329   ⟹   XP_054208304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0537,126,599 - 37,316,247 (+)NCBI
RefSeq Acc Id: XM_054352330   ⟹   XP_054208305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0537,126,599 - 37,316,247 (+)NCBI
RefSeq Acc Id: XM_054352331   ⟹   XP_054208306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0537,220,873 - 37,316,247 (+)NCBI
RefSeq Acc Id: XM_054352332   ⟹   XP_054208307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0537,126,599 - 37,310,820 (+)NCBI
1 to 30 of 34 rows
Protein RefSeqs NP_056199 (Get FASTA)   NCBI Sequence Viewer  
  NP_597677 (Get FASTA)   NCBI Sequence Viewer  
  XP_005248337 (Get FASTA)   NCBI Sequence Viewer  
  XP_005248339 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714530 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714531 (Get FASTA)   NCBI Sequence Viewer  
  XP_011512317 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864818 (Get FASTA)   NCBI Sequence Viewer  
  XP_054208302 (Get FASTA)   NCBI Sequence Viewer  
  XP_054208303 (Get FASTA)   NCBI Sequence Viewer  
  XP_054208304 (Get FASTA)   NCBI Sequence Viewer  
  XP_054208305 (Get FASTA)   NCBI Sequence Viewer  
  XP_054208306 (Get FASTA)   NCBI Sequence Viewer  
  XP_054208307 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH33847 (Get FASTA)   NCBI Sequence Viewer  
  AAI31491 (Get FASTA)   NCBI Sequence Viewer  
  AAI46822 (Get FASTA)   NCBI Sequence Viewer  
  BAC86701 (Get FASTA)   NCBI Sequence Viewer  
  BAF83036 (Get FASTA)   NCBI Sequence Viewer  
  CAD98051 (Get FASTA)   NCBI Sequence Viewer  
  CAD98052 (Get FASTA)   NCBI Sequence Viewer  
  CAE45790 (Get FASTA)   NCBI Sequence Viewer  
  CAF25290 (Get FASTA)   NCBI Sequence Viewer  
  CAG26691 (Get FASTA)   NCBI Sequence Viewer  
  DAA05331 (Get FASTA)   NCBI Sequence Viewer  
  EAW55948 (Get FASTA)   NCBI Sequence Viewer  
  EAW55949 (Get FASTA)   NCBI Sequence Viewer  
  EAW55950 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000282516
  ENSP00000282516.8
1 to 30 of 34 rows
1 to 5 of 18 rows
1 to 5 of 18 rows
RefSeq Acc Id: NP_056199   ⟸   NM_015384
- Peptide Label: isoform B
- UniProtKB: Q6IEH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_597677   ⟸   NM_133433
- Peptide Label: isoform A
- UniProtKB: Q9Y6Y3 (UniProtKB/Swiss-Prot),   Q8N4M5 (UniProtKB/Swiss-Prot),   Q7Z2E6 (UniProtKB/Swiss-Prot),   Q6ZT92 (UniProtKB/Swiss-Prot),   Q6N080 (UniProtKB/Swiss-Prot),   Q6KCD6 (UniProtKB/Swiss-Prot),   Q9Y6Y4 (UniProtKB/Swiss-Prot),   Q6KC79 (UniProtKB/Swiss-Prot),   Q6IEH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005248337   ⟸   XM_005248280
- Peptide Label: isoform X3
- UniProtKB: Q6IEH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005248339   ⟸   XM_005248282
- Peptide Label: isoform X5
- UniProtKB: Q6IEH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006714530   ⟸   XM_006714467
- Peptide Label: isoform X1
- UniProtKB: Q6IEH8 (UniProtKB/TrEMBL)
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q6KC79-F1-model_v2 AlphaFold Q6KC79 1-1400 view protein structure
AF-Q6KC79-F2-model_v2 AlphaFold Q6KC79 201-1600 view protein structure
AF-Q6KC79-F3-model_v2 AlphaFold Q6KC79 401-1800 view protein structure
AF-Q6KC79-F4-model_v2 AlphaFold Q6KC79 601-2000 view protein structure
AF-Q6KC79-F5-model_v2 AlphaFold Q6KC79 801-2200 view protein structure
AF-Q6KC79-F6-model_v2 AlphaFold Q6KC79 1001-2400 view protein structure
AF-Q6KC79-F7-model_v2 AlphaFold Q6KC79 1201-2600 view protein structure
AF-Q6KC79-F8-model_v2 AlphaFold Q6KC79 1401-2800 view protein structure
AF-Q6KC79-F9-model_v2 AlphaFold Q6KC79 1601-2804 view protein structure

RGD ID:6869408
Promoter ID:EPDNEW_H7869
Type:initiation region
Name:NIPBL_2
Description:NIPBL, cohesin loading factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7870  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,654 - 36,876,714EPDNEW
RGD ID:6869410
Promoter ID:EPDNEW_H7870
Type:initiation region
Name:NIPBL_1
Description:NIPBL, cohesin loading factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7869  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38536,876,769 - 36,876,829EPDNEW
RGD ID:6803397
Promoter ID:HG_KWN:49977
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_015384,   OTTHUMT00000207582
Position:
Human AssemblyChrPosition (strand)Source
Build 36536,911,841 - 36,913,092 (+)MPROMDB


1 to 40 of 46 rows
Database
Acc Id
Source(s)
COSMIC NIPBL COSMIC
Ensembl Genes ENSG00000164190 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000282516 ENTREZGENE
  ENST00000282516.13 UniProtKB/Swiss-Prot
  ENST00000448238 ENTREZGENE
  ENST00000448238.2 UniProtKB/Swiss-Prot
  ENST00000652901 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
GTEx ENSG00000164190 GTEx
HGNC ID HGNC:28862 ENTREZGENE
Human Proteome Map NIPBL Human Proteome Map
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  Cohesin_HEAT UniProtKB/Swiss-Prot
  Nipped-B_C UniProtKB/Swiss-Prot
  SCC2/Nipped-B UniProtKB/Swiss-Prot
KEGG Report hsa:25836 UniProtKB/Swiss-Prot
NCBI Gene 25836 ENTREZGENE
OMIM 608667 OMIM
PANTHER NIPPED-B-LIKE PROTEIN UniProtKB/Swiss-Prot
  PTHR21704 UniProtKB/Swiss-Prot
Pfam Cohesin_HEAT UniProtKB/Swiss-Prot
  Nipped-B_C UniProtKB/Swiss-Prot
PharmGKB PA134962343 PharmGKB
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt A0A590UJS4 ENTREZGENE, UniProtKB/TrEMBL
  A2RRA7_HUMAN UniProtKB/TrEMBL
  A6QL62_HUMAN UniProtKB/TrEMBL
  H0Y8M3_HUMAN UniProtKB/TrEMBL
  NIPBL_HUMAN UniProtKB/Swiss-Prot
  Q6IEH8 ENTREZGENE, UniProtKB/TrEMBL
  Q6KC79 ENTREZGENE
  Q6KCD6 ENTREZGENE
  Q6N080 ENTREZGENE
  Q6ZT92 ENTREZGENE
  Q7Z2E6 ENTREZGENE
  Q8N4M5 ENTREZGENE
  Q9Y6Y3 ENTREZGENE
  Q9Y6Y4 ENTREZGENE
UniProt Secondary Q6KCD6 UniProtKB/Swiss-Prot
1 to 40 of 46 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 NIPBL  NIPBL cohesin loading factor  NIPBL  NIPBL, cohesin loading factor  Symbol and/or name change 5135510 APPROVED
2016-04-26 NIPBL  NIPBL, cohesin loading factor  NIPBL  Nipped-B homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED