SRGAP2 (SLIT-ROBO Rho GTPase activating protein 2) - Rat Genome Database

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Gene: SRGAP2 (SLIT-ROBO Rho GTPase activating protein 2) Homo sapiens
Analyze
Symbol: SRGAP2
Name: SLIT-ROBO Rho GTPase activating protein 2
RGD ID: 1603684
HGNC Page HGNC:19751
Description: Enables GTPase activator activity; protein homodimerization activity; and small GTPase binding activity. Involved in several processes, including plasma membrane bounded cell projection organization; substrate adhesion-dependent cell spreading; and synapse assembly. Located in dendritic spine head; lamellipodium; and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: ARHGAP34; FNBP2; formin binding protein 2; formin-binding protein 2; KIAA0456; rho GTPase-activating protein 34; RP11-312O7.2; SLIT-ROBO GAP2; SLIT-ROBO Rho GTPase-activating protein 2; SRGAP2A; srGAP3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,203,541 - 206,464,436 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,203,346 - 206,464,436 (+)EnsemblGRCh38hg38GRCh38
GRCh371206,516,197 - 206,637,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,582,823 - 204,704,406 (+)NCBINCBI36Build 36hg18NCBI36
Celera1179,840,685 - 179,889,229 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,269,281 - 177,336,031 (+)NCBIHuRef
CHM1_11207,651,212 - 207,909,982 (+)NCBICHM1_1
T2T-CHM13v2.01205,467,727 - 205,728,612 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8268792   PMID:9455484   PMID:11672528   PMID:12477932   PMID:12736724   PMID:14702039   PMID:14744259   PMID:15046868   PMID:15161933   PMID:15252450   PMID:15324660   PMID:16318909  
PMID:16344560   PMID:17043677   PMID:17353931   PMID:17500595   PMID:17979178   PMID:19041431   PMID:19807924   PMID:19913121   PMID:20379614   PMID:20602751   PMID:20628086   PMID:20810653  
PMID:21148482   PMID:21873635   PMID:22106086   PMID:22261722   PMID:22467852   PMID:22559943   PMID:22559944   PMID:23031429   PMID:23443559   PMID:23782070   PMID:23892896   PMID:24255178  
PMID:25468996   PMID:25662211   PMID:25921289   PMID:26186194   PMID:26365803   PMID:26496610   PMID:26638075   PMID:27173435   PMID:27373832   PMID:27917825   PMID:27966608   PMID:28514442  
PMID:28515276   PMID:28611215   PMID:28912560   PMID:29242313   PMID:29507755   PMID:29509190   PMID:29511261   PMID:29568061   PMID:30021884   PMID:30224337   PMID:31527615   PMID:31871319  
PMID:31932471   PMID:32203420   PMID:32780723   PMID:33111431   PMID:33187986   PMID:33916271   PMID:33961781   PMID:33984363   PMID:34079125   PMID:34672954   PMID:35271311   PMID:35384245  
PMID:35446349   PMID:35748872   PMID:35914814   PMID:35944360   PMID:36059022   PMID:36215168   PMID:36232890   PMID:36277474   PMID:36543142   PMID:36593959   PMID:36931259   PMID:37689310  
PMID:38117590  


Genomics

Comparative Map Data
SRGAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,203,541 - 206,464,436 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,203,346 - 206,464,436 (+)EnsemblGRCh38hg38GRCh38
GRCh371206,516,197 - 206,637,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,582,823 - 204,704,406 (+)NCBINCBI36Build 36hg18NCBI36
Celera1179,840,685 - 179,889,229 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,269,281 - 177,336,031 (+)NCBIHuRef
CHM1_11207,651,212 - 207,909,982 (+)NCBICHM1_1
T2T-CHM13v2.01205,467,727 - 205,728,612 (+)NCBIT2T-CHM13v2.0
Srgap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,212,989 - 131,455,269 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,212,989 - 131,455,090 (-)EnsemblGRCm39 Ensembl
GRCm381131,285,251 - 131,527,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,285,251 - 131,527,352 (-)EnsemblGRCm38mm10GRCm38
MGSCv371133,181,828 - 133,423,938 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,112,797 - 133,354,907 (-)NCBIMGSCv36mm8
Celera1133,908,005 - 134,139,712 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.93NCBI
Srgap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,298,192 - 45,519,330 (-)NCBIGRCr8
mRatBN7.21342,745,956 - 42,967,091 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,745,947 - 42,967,058 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,354,029 - 45,577,291 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,642,156 - 46,865,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,905,845 - 44,129,315 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,065,280 - 48,286,888 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,068,158 - 48,286,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,141,198 - 53,362,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,239,946 - 44,452,446 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1343,100,229 - 43,312,451 (-)NCBICelera
Cytogenetic Map13q13NCBI
Srgap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,801,235 - 42,050,731 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,801,235 - 42,050,731 (+)NCBIChiLan1.0ChiLan1.0
SRGAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,913,844 - 43,168,344 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,879,341 - 43,133,846 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,808,318 - 182,064,583 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,090,389 - 186,346,012 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,092,113 - 186,346,019 (+)Ensemblpanpan1.1panPan2
SRGAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,506,617 - 2,741,866 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,599,173 - 2,834,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,504,091 - 2,739,418 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,504,099 - 2,739,408 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,497,737 - 2,732,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,890,316 - 3,126,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0383,090,840 - 3,326,253 (+)NCBIUU_Cfam_GSD_1.0
Srgap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,855,976 - 69,097,751 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365576,096,258 - 6,338,024 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRGAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,838,123 - 67,117,315 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,838,062 - 67,117,315 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,085,753 - 73,361,203 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRGAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,897,699 - 23,147,097 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,897,469 - 23,145,218 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,596,464 - 23,848,743 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srgap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,935,472 - 5,169,050 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,937,573 - 5,169,104 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SRGAP2
12 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11		 pathogenic
GRCh38/hg38 1q32.1-32.2(chr1:204990129-210220258)x3 copy number gain See cases [RCV000051859] Chr1:204990129..210220258 [GRCh38]
Chr1:204959257..210572305 [GRCh37]
Chr1:203225880..208638928 [NCBI36]
Chr1:1q32.1-32.2		 pathogenic
GRCh38/hg38 1q32.1-42.12(chr1:204764914-225408698)x3 copy number gain See cases [RCV000142054] Chr1:204764914..225408698 [GRCh38]
Chr1:204734042..225596400 [GRCh37]
Chr1:203000665..223663023 [NCBI36]
Chr1:1q32.1-42.12		 pathogenic
NC_000001.10:g.(?_206516175)_(206567055_?)dup duplication Undetermined early-onset epileptic encephalopathy [RCV000585850] Chr1:206516175..206567055 [GRCh37]
Chr1:1q32.1		 likely pathogenic
NC_000001.10:g.(?_206579711)_(206634815_?)dup duplication Undetermined early-onset epileptic encephalopathy [RCV000585817] Chr1:206579711..206634815 [GRCh37]
Chr1:1q32.1		 likely pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13		 pathogenic
NM_015326.5(SRGAP2):c.704G>A (p.Arg235His) single nucleotide variant Intellectual disability [RCV000578222] Chr1:206393546 [GRCh38]
Chr1:206566903 [GRCh37]
Chr1:1q32.1		 likely pathogenic|uncertain significance
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1q32.1-32.3(chr1:204682513-212815646) copy number loss Global developmental delay [RCV000626524] Chr1:204682513..212815646 [GRCh37]
Chr1:1q32.1-32.3		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
NC_000001.11:g.(?_204033173)_(208209798_?)del deletion Autism [RCV000754138] Chr1:204033173..208209798 [GRCh38]
Chr1:1q32.1-32.2		 likely pathogenic
GRCh37/hg19 1q32.1(chr1:206316055-206581938)x1 copy number loss not provided [RCV000736845] Chr1:206316055..206581938 [GRCh37]
Chr1:1q32.1		 benign
NM_015326.5(SRGAP2):c.920A>C (p.His307Pro) single nucleotide variant not provided [RCV000761692] Chr1:206401509 [GRCh38]
Chr1:206574868 [GRCh37]
Chr1:1q32.1		 uncertain significance
GRCh37/hg19 1q32.1(chr1:206539637-206661564)x1 copy number loss not provided [RCV000684692] Chr1:206539637..206661564 [GRCh37]
Chr1:1q32.1		 uncertain significance
GRCh37/hg19 1q25.3-41(chr1:185644663-221698833)x3 copy number gain not provided [RCV000749265] Chr1:185644663..221698833 [GRCh37]
Chr1:1q25.3-41		 pathogenic
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44		 pathogenic
GRCh37/hg19 1q32.1-32.3(chr1:206329070-213263817)x3 copy number gain not provided [RCV000848713] Chr1:206329070..213263817 [GRCh37]
Chr1:1q32.1-32.3		 uncertain significance
GRCh37/hg19 1q32.1-44(chr1:204045948-249218992)x3 copy number gain See cases [RCV001007407] Chr1:204045948..249218992 [GRCh37]
Chr1:1q32.1-44		 pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44		 uncertain significance
NC_000001.10:g.(?_200522516)_(208391267_?)dup duplication Hypokalemic periodic paralysis, type 1 [RCV003119239]|not provided [RCV003119240] Chr1:200522516..208391267 [GRCh37]
Chr1:1q32.1-32.2		 uncertain significance|no classifications from unflagged records
GRCh37/hg19 1q31.3-44(chr1:197867914-249224684)x3 copy number gain See cases [RCV002287837] Chr1:197867914..249224684 [GRCh37]
Chr1:1q31.3-44		 pathogenic
NM_015326.5(SRGAP2):c.1015C>T (p.Pro339Ser) single nucleotide variant SRGAP2-associated Neurodevelopmental Disorder [RCV002266864] Chr1:206401604 [GRCh38]
Chr1:206574963 [GRCh37]
Chr1:1q32.1		 uncertain significance
NM_015326.5(SRGAP2):c.1440A>T (p.Glu480Asp) single nucleotide variant not provided [RCV003414730] Chr1:206415972 [GRCh38]
Chr1:206589332 [GRCh37]
Chr1:1q32.1		 uncertain significance
GRCh37/hg19 1q31.3-32.2(chr1:194356425-210988710)x3 copy number gain not provided [RCV001249273] Chr1:194356425..210988710 [GRCh37]
Chr1:1q31.3-32.2		 not provided
NC_000001.10:g.(?_200522516)_(206945780_?)dup duplication Epilepsy, familial adult myoclonic, 5 [RCV003116306] Chr1:200522516..206945780 [GRCh37]
Chr1:1q32.1		 uncertain significance
GRCh37/hg19 1q25.3-32.3(chr1:181453460-213107248)x3 copy number gain not provided [RCV002475637] Chr1:181453460..213107248 [GRCh37]
Chr1:1q25.3-32.3		 pathogenic
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR214hsa-miR-214-3pMirtarbaseexternal_infoReporter assayFunctional MTI21276775

Predicted Target Of
Summary Value
Count of predictions:4453
Count of miRNA genes:1229
Interacting mature miRNAs:1541
Transcripts:ENST00000295713, ENST00000414007, ENST00000419187, ENST00000426388, ENST00000439126, ENST00000467419, ENST00000471256, ENST00000483628, ENST00000488049
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D1S2636  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,635,153 - 206,635,370UniSTSGRCh37
Build 361204,701,776 - 204,701,993RGDNCBI36
Celera1179,886,594 - 179,886,815RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,333,396 - 177,333,617UniSTS
Marshfield Genetic Map1222.84UniSTS
Marshfield Genetic Map1222.84RGD
Genethon Genetic Map1227.3UniSTS
deCODE Assembly Map1208.42UniSTS
Whitehead-YAC Contig Map1 UniSTS
RH48365  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,580,622 - 206,580,788UniSTSGRCh37
GRCh371121,130,382 - 121,130,548UniSTSGRCh37
Build 361120,831,905 - 120,832,071RGDNCBI36
Cytogenetic Map1p11.2UniSTS
Cytogenetic Map1q32.1UniSTS
HuRef1177,278,910 - 177,279,076UniSTS
RH36527  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371121,113,581 - 121,113,755UniSTSGRCh37
GRCh371206,563,810 - 206,563,984UniSTSGRCh37
Build 361120,815,104 - 120,815,278RGDNCBI36
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map1p11.2UniSTS
RH64480  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,578,039 - 206,578,135UniSTSGRCh37
GRCh371121,127,798 - 121,127,894UniSTSGRCh37
Build 361120,829,321 - 120,829,417RGDNCBI36
Cytogenetic Map1p11.2UniSTS
Cytogenetic Map1q32.1UniSTS
HuRef1177,276,326 - 177,276,422UniSTS
RH119902  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371121,108,690 - 121,109,016UniSTSGRCh37
GRCh371206,558,903 - 206,559,231UniSTSGRCh37
Build 361120,810,213 - 120,810,539RGDNCBI36
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map1p11.2UniSTS
SHGC-112560  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,582,312 - 206,582,586UniSTSGRCh37
GRCh371121,132,072 - 121,132,346UniSTSGRCh37
Build 361120,833,595 - 120,833,869RGDNCBI36
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map1p11.2UniSTS
HuRef1177,280,600 - 177,280,874UniSTS
FNBP2__6744  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,637,017 - 206,637,814UniSTSGRCh37
Build 361204,703,640 - 204,704,437RGDNCBI36
Celera1179,888,463 - 179,889,260RGD
HuRef1177,335,265 - 177,336,062UniSTS
SHGC-76221  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,637,530 - 206,637,669UniSTSGRCh37
Build 361204,704,153 - 204,704,292RGDNCBI36
Celera1179,888,976 - 179,889,115RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,335,778 - 177,335,917UniSTS
TNG Radiation Hybrid Map1100296.0UniSTS
GeneMap99-GB4 RH Map1682.48UniSTS
NCBI RH Map11791.2UniSTS
RH64549  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,629,270 - 206,629,413UniSTSGRCh37
Build 361204,695,893 - 204,696,036RGDNCBI36
Celera1179,880,711 - 179,880,854RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,327,512 - 177,327,655UniSTS
GeneMap99-GB4 RH Map1682.48UniSTS
NCBI RH Map11796.4UniSTS
SHGC-76254  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,597,438 - 206,597,520UniSTSGRCh37
Build 361204,664,061 - 204,664,143RGDNCBI36
Celera1179,848,882 - 179,848,964RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,295,738 - 177,295,820UniSTS
TNG Radiation Hybrid Map1100313.0UniSTS
GeneMap99-GB4 RH Map1682.48UniSTS
Whitehead-RH Map1838.5UniSTS
NCBI RH Map11791.2UniSTS
RH64614  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,636,141 - 206,636,254UniSTSGRCh37
Build 361204,702,764 - 204,702,877RGDNCBI36
Celera1179,887,586 - 179,887,699RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,334,388 - 177,334,501UniSTS
GeneMap99-GB4 RH Map1682.48UniSTS
NCBI RH Map11796.4UniSTS
SHGC-76241  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,624,018 - 206,624,145UniSTSGRCh37
Build 361204,690,641 - 204,690,768RGDNCBI36
Celera1179,875,462 - 179,875,589RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,322,262 - 177,322,389UniSTS
TNG Radiation Hybrid Map1100292.0UniSTS
GeneMap99-GB4 RH Map1682.41UniSTS
NCBI RH Map11796.4UniSTS
A002S48  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,629,234 - 206,629,394UniSTSGRCh37
Build 361204,695,857 - 204,696,017RGDNCBI36
Celera1179,880,675 - 179,880,835RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,327,476 - 177,327,636UniSTS
GeneMap99-GB4 RH Map1682.0UniSTS
NCBI RH Map11791.2UniSTS
IB1439  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,629,272 - 206,629,454UniSTSGRCh37
Build 361204,695,895 - 204,696,077RGDNCBI36
Celera1179,880,713 - 179,880,895RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,327,514 - 177,327,696UniSTS
GeneMap99-GB4 RH Map1682.48UniSTS
Whitehead-RH Map1838.5UniSTS
NCBI RH Map11791.2UniSTS
SHGC-76240  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,628,148 - 206,628,310UniSTSGRCh37
Build 361204,694,771 - 204,694,933RGDNCBI36
Celera1179,879,589 - 179,879,751RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,326,390 - 177,326,552UniSTS
TNG Radiation Hybrid Map1100296.0UniSTS
GeneMap99-GB4 RH Map1682.41UniSTS
NCBI RH Map11796.4UniSTS
G34859  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371121,118,628 - 121,118,760UniSTSGRCh37
GRCh371206,568,847 - 206,568,979UniSTSGRCh37
Build 361120,820,151 - 120,820,283RGDNCBI36
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map1p11.2UniSTS
D1S283E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,578,015 - 206,578,221UniSTSGRCh37
GRCh371121,127,774 - 121,127,980UniSTSGRCh37
Build 361120,829,297 - 120,829,503RGDNCBI36
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map1p11.2UniSTS
HuRef1177,276,302 - 177,276,508UniSTS
GeneMap99-G3 RH Map15645.0UniSTS
G29313  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,569,026 - 206,569,175UniSTSGRCh37
GRCh371121,118,807 - 121,118,956UniSTSGRCh37
Build 361120,820,330 - 120,820,479RGDNCBI36
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map1p11.2UniSTS
HuRef1177,267,308 - 177,267,457UniSTS
RH66387  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371206,637,395 - 206,637,556UniSTSGRCh37
Build 361204,704,018 - 204,704,179RGDNCBI36
Celera1179,888,841 - 179,889,002RGD
Cytogenetic Map1q32.1UniSTS
HuRef1177,335,643 - 177,335,804UniSTS
GeneMap99-GB4 RH Map1681.27UniSTS
RH66473  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q32.1UniSTS
RH44985  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q32.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 349 437 368 22 462 19 2785 202 1848 73 577 841 11 1024 1405 1
Low 2002 2546 1115 410 1310 255 1533 1991 1815 109 683 622 160 180 1383 3
Below cutoff 1 1 1 2 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_033804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054335627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB007925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC244023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC244034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC244035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC244158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL109844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL161736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA447513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR407567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA110905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX533503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S68466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000419187   ⟹   ENSP00000397990
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,205,626 - 206,406,709 (+)Ensembl
RefSeq Acc Id: ENST00000572793   ⟹   ENSP00000459397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,214,723 - 206,392,757 (+)Ensembl
RefSeq Acc Id: ENST00000573034   ⟹   ENSP00000459615
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,203,541 - 206,464,436 (+)Ensembl
RefSeq Acc Id: ENST00000579225   ⟹   ENSP00000474255
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,203,345 - 206,303,473 (+)Ensembl
RefSeq Acc Id: ENST00000603575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,203,908 - 206,205,819 (+)Ensembl
RefSeq Acc Id: ENST00000603708
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,203,346 - 206,205,829 (+)Ensembl
RefSeq Acc Id: ENST00000604010   ⟹   ENSP00000474818
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,453,199 - 206,461,227 (+)Ensembl
RefSeq Acc Id: ENST00000604133
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,312,148 - 206,392,904 (+)Ensembl
RefSeq Acc Id: ENST00000604247
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,453,661 - 206,456,159 (+)Ensembl
RefSeq Acc Id: ENST00000604419
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,437,619 - 206,446,204 (+)Ensembl
RefSeq Acc Id: ENST00000604423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,404,963 - 206,408,031 (+)Ensembl
RefSeq Acc Id: ENST00000604925   ⟹   ENSP00000474699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,440,061 - 206,456,131 (+)Ensembl
RefSeq Acc Id: ENST00000605242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,214,505 - 206,384,066 (+)Ensembl
RefSeq Acc Id: ENST00000605476   ⟹   ENSP00000474270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,406,377 - 206,456,159 (+)Ensembl
RefSeq Acc Id: ENST00000605610   ⟹   ENSP00000473954
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,205,673 - 206,454,700 (+)Ensembl
RefSeq Acc Id: ENST00000624686
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,203,888 - 206,208,229 (+)Ensembl
RefSeq Acc Id: ENST00000624873   ⟹   ENSP00000485517
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1206,205,909 - 206,462,850 (+)Ensembl
RefSeq Acc Id: NM_001170637   ⟹   NP_001164108
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,464,436 (+)NCBI
GRCh371206,516,197 - 206,637,783 (+)ENTREZGENE
Celera1179,840,685 - 179,889,229 (+)RGD
HuRef1177,269,281 - 177,336,031 (+)RGD
CHM1_11207,650,968 - 207,909,982 (+)NCBI
T2T-CHM13v2.01205,467,727 - 205,728,612 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001300952   ⟹   NP_001287881
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,456,159 (+)NCBI
CHM1_11207,650,968 - 207,901,700 (+)NCBI
T2T-CHM13v2.01205,467,727 - 205,720,343 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001377444   ⟹   NP_001364373
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,464,436 (+)NCBI
T2T-CHM13v2.01205,467,727 - 205,728,612 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001377445   ⟹   NP_001364374
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,456,159 (+)NCBI
T2T-CHM13v2.01205,467,727 - 205,720,343 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001377446   ⟹   NP_001364375
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,456,159 (+)NCBI
T2T-CHM13v2.01205,467,727 - 205,720,343 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001377447   ⟹   NP_001364376
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,456,159 (+)NCBI
T2T-CHM13v2.01205,467,727 - 205,720,343 (+)NCBI
Sequence:
RefSeq Acc Id: NM_015326   ⟹   NP_056141
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,464,436 (+)NCBI
GRCh371206,516,197 - 206,637,783 (+)ENTREZGENE
GRCh371206,135,293 - 206,135,657 (-)NCBI
Build 361204,582,823 - 204,704,406 (+)NCBI Archive
Celera1179,840,685 - 179,889,229 (+)RGD
HuRef1177,269,281 - 177,336,031 (+)RGD
CHM1_11207,650,968 - 207,909,982 (+)NCBI
T2T-CHM13v2.01205,467,727 - 205,728,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011509354   ⟹   XP_011507656
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,464,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011509355   ⟹   XP_011507657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,464,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024446014   ⟹   XP_024301782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,298,996 - 206,464,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024446015   ⟹   XP_024301783
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,302,622 - 206,464,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047416530   ⟹   XP_047272486
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,459,678 (+)NCBI
RefSeq Acc Id: XM_047416531   ⟹   XP_047272487
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,203,541 - 206,459,678 (+)NCBI
RefSeq Acc Id: XM_047416532   ⟹   XP_047272488
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,340,064 - 206,464,436 (+)NCBI
RefSeq Acc Id: XM_047416533   ⟹   XP_047272489
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,205,429 - 206,464,436 (+)NCBI
RefSeq Acc Id: XM_047416534   ⟹   XP_047272490
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,302,649 - 206,456,159 (+)NCBI
RefSeq Acc Id: XM_047416535   ⟹   XP_047272491
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,340,253 - 206,456,159 (+)NCBI
RefSeq Acc Id: XM_047416536   ⟹   XP_047272492
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,340,584 - 206,408,024 (+)NCBI
RefSeq Acc Id: XM_054335616   ⟹   XP_054191591
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,467,727 - 205,728,612 (+)NCBI
RefSeq Acc Id: XM_054335617   ⟹   XP_054191592
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,467,727 - 205,728,612 (+)NCBI
RefSeq Acc Id: XM_054335618   ⟹   XP_054191593
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,563,206 - 205,728,612 (+)NCBI
RefSeq Acc Id: XM_054335619   ⟹   XP_054191594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,566,836 - 205,728,612 (+)NCBI
RefSeq Acc Id: XM_054335620   ⟹   XP_054191595
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,467,727 - 205,723,862 (+)NCBI
RefSeq Acc Id: XM_054335621   ⟹   XP_054191596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,467,727 - 205,723,862 (+)NCBI
RefSeq Acc Id: XM_054335622   ⟹   XP_054191597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,604,275 - 205,728,612 (+)NCBI
RefSeq Acc Id: XM_054335623   ⟹   XP_054191598
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,469,616 - 205,728,612 (+)NCBI
RefSeq Acc Id: XM_054335624   ⟹   XP_054191599
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,632,640 - 205,728,612 (+)NCBI
RefSeq Acc Id: XM_054335625   ⟹   XP_054191600
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,566,858 - 205,720,343 (+)NCBI
RefSeq Acc Id: XM_054335626   ⟹   XP_054191601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,604,464 - 205,720,343 (+)NCBI
RefSeq Acc Id: XM_054335627   ⟹   XP_054191602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01205,604,795 - 205,673,610 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001164108 (Get FASTA)   NCBI Sequence Viewer  
  NP_001287881 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364373 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364374 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364375 (Get FASTA)   NCBI Sequence Viewer  
  NP_001364376 (Get FASTA)   NCBI Sequence Viewer  
  NP_056141 (Get FASTA)   NCBI Sequence Viewer  
  XP_011507656 (Get FASTA)   NCBI Sequence Viewer  
  XP_011507657 (Get FASTA)   NCBI Sequence Viewer  
  XP_024301782 (Get FASTA)   NCBI Sequence Viewer  
  XP_024301783 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272486 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272487 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272488 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272489 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272490 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272491 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272492 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191591 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191592 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191593 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191594 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191595 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191596 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191597 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191598 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191599 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191600 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191601 (Get FASTA)   NCBI Sequence Viewer  
  XP_054191602 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI32873 (Get FASTA)   NCBI Sequence Viewer  
  AAI32875 (Get FASTA)   NCBI Sequence Viewer  
  AAI44344 (Get FASTA)   NCBI Sequence Viewer  
  AQN67656 (Get FASTA)   NCBI Sequence Viewer  
  BAA32301 (Get FASTA)   NCBI Sequence Viewer  
  BAG50836 (Get FASTA)   NCBI Sequence Viewer  
  BAG56851 (Get FASTA)   NCBI Sequence Viewer  
  BAG57406 (Get FASTA)   NCBI Sequence Viewer  
  BAH12200 (Get FASTA)   NCBI Sequence Viewer  
  CAH73674 (Get FASTA)   NCBI Sequence Viewer  
  CAH73675 (Get FASTA)   NCBI Sequence Viewer  
  CAH73676 (Get FASTA)   NCBI Sequence Viewer  
  EAW93550 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000397990
  ENSP00000397990.3
  ENSP00000459397.2
  ENSP00000459615
  ENSP00000459615.2
  ENSP00000473954
  ENSP00000473954.1
  ENSP00000474270.1
  ENSP00000474699.1
  ENSP00000474818.1
  ENSP00000485517
  ENSP00000485517.1
GenBank Protein O75044 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_056141   ⟸   NM_015326
- Peptide Label: isoform a
- UniProtKB: A2RUF3 (UniProtKB/Swiss-Prot),   O75044 (UniProtKB/Swiss-Prot),   Q5VZB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164108   ⟸   NM_001170637
- Peptide Label: isoform c
- UniProtKB: B7ZM87 (UniProtKB/TrEMBL),   Q5VZB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001287881   ⟸   NM_001300952
- Peptide Label: isoform d
- UniProtKB: A0A075B7B5 (UniProtKB/TrEMBL),   B7Z3G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011507656   ⟸   XM_011509354
- Peptide Label: isoform X1
- UniProtKB: Q5VZB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011507657   ⟸   XM_011509355
- Peptide Label: isoform X2
- UniProtKB: Q5VZB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024301782   ⟸   XM_024446014
- Peptide Label: isoform X3
- UniProtKB: Q5VZB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024301783   ⟸   XM_024446015
- Peptide Label: isoform X3
- UniProtKB: Q5VZB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001364373   ⟸   NM_001377444
- Peptide Label: isoform e
- UniProtKB: A0A1S5UZH8 (UniProtKB/TrEMBL),   B7Z3G4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364376   ⟸   NM_001377447
- Peptide Label: isoform h
- UniProtKB: B7Z3G4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364374   ⟸   NM_001377445
- Peptide Label: isoform f
- UniProtKB: B7Z3G4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364375   ⟸   NM_001377446
- Peptide Label: isoform g
- UniProtKB: B7Z3G4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000485517   ⟸   ENST00000624873
RefSeq Acc Id: ENSP00000459397   ⟸   ENST00000572793
RefSeq Acc Id: ENSP00000459615   ⟸   ENST00000573034
RefSeq Acc Id: ENSP00000397990   ⟸   ENST00000419187
RefSeq Acc Id: ENSP00000474818   ⟸   ENST00000604010
RefSeq Acc Id: ENSP00000474699   ⟸   ENST00000604925
RefSeq Acc Id: ENSP00000474255   ⟸   ENST00000579225
RefSeq Acc Id: ENSP00000474270   ⟸   ENST00000605476
RefSeq Acc Id: ENSP00000473954   ⟸   ENST00000605610
RefSeq Acc Id: XP_047272486   ⟸   XM_047416530
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047272487   ⟸   XM_047416531
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047272489   ⟸   XM_047416533
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047272490   ⟸   XM_047416534
- Peptide Label: isoform X7
RefSeq Acc Id: XP_047272488   ⟸   XM_047416532
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047272491   ⟸   XM_047416535
- Peptide Label: isoform X8
RefSeq Acc Id: XP_047272492   ⟸   XM_047416536
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054191591   ⟸   XM_054335616
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054191592   ⟸   XM_054335617
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054191595   ⟸   XM_054335620
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054191596   ⟸   XM_054335621
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054191598   ⟸   XM_054335623
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054191593   ⟸   XM_054335618
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054191594   ⟸   XM_054335619
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054191600   ⟸   XM_054335625
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054191597   ⟸   XM_054335622
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054191601   ⟸   XM_054335626
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054191602   ⟸   XM_054335627
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054191599   ⟸   XM_054335624
- Peptide Label: isoform X6
Protein Domains
F-BAR   Rho-GAP   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O75044-F1-model_v2 AlphaFold O75044 1-1071 view protein structure

Promoters
RGD ID:6858782
Promoter ID:EPDNEW_H2556
Type:initiation region
Name:SRGAP2_1
Description:SLIT-ROBO Rho GTPase activating protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2557  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,205,860 - 206,205,920EPDNEW
RGD ID:6858784
Promoter ID:EPDNEW_H2557
Type:initiation region
Name:SRGAP2_2
Description:SLIT-ROBO Rho GTPase activating protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2556  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381206,404,940 - 206,405,000EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:19751 AgrOrtholog
COSMIC SRGAP2 COSMIC
Ensembl Genes ENSG00000266028 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000419187 ENTREZGENE
  ENST00000419187.6 UniProtKB/TrEMBL
  ENST00000572793.2 UniProtKB/TrEMBL
  ENST00000573034 ENTREZGENE
  ENST00000573034.8 UniProtKB/Swiss-Prot
  ENST00000604010.1 UniProtKB/TrEMBL
  ENST00000604925.5 UniProtKB/TrEMBL
  ENST00000605476.5 UniProtKB/TrEMBL
  ENST00000605610 ENTREZGENE
  ENST00000605610.5 UniProtKB/TrEMBL
  ENST00000624873 ENTREZGENE
  ENST00000624873.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000266028 GTEx
HGNC ID HGNC:19751 ENTREZGENE
Human Proteome Map SRGAP2 Human Proteome Map
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  srGAP1/2/3_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:23380 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 23380 ENTREZGENE
OMIM 606524 OMIM
PANTHER PTHR14166:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA164742513 PharmGKB
PROSITE F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHOGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A075B743_HUMAN UniProtKB/TrEMBL
  A0A075B7B5 ENTREZGENE, UniProtKB/TrEMBL
  A0A075B7E6_HUMAN UniProtKB/TrEMBL
  A0A075B7E9_HUMAN UniProtKB/TrEMBL
  A0A1S5UZH8 ENTREZGENE, UniProtKB/TrEMBL
  A2RUF3 ENTREZGENE
  B4DFE5_HUMAN UniProtKB/TrEMBL
  B7Z3G4 ENTREZGENE, UniProtKB/TrEMBL
  B7ZM87 ENTREZGENE, UniProtKB/TrEMBL
  E9PDX4_HUMAN UniProtKB/TrEMBL
  O75044 ENTREZGENE
  Q5VZB3_HUMAN UniProtKB/TrEMBL
  Q5VZB4_HUMAN UniProtKB/TrEMBL
  Q5VZB5 ENTREZGENE, UniProtKB/TrEMBL
  SRGP2_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A2RUF3 UniProtKB/Swiss-Prot