Zdhhc1 (zinc finger, DHHC-type containing 1) - Rat Genome Database

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Gene: Zdhhc1 (zinc finger, DHHC-type containing 1) Rattus norvegicus
Analyze
Symbol: Zdhhc1
Name: zinc finger, DHHC-type containing 1
RGD ID: 1589775
Description: Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in several processes, including antiviral innate immune response; positive regulation of defense response to virus by host; and positive regulation of protein oligomerization. Predicted to be located in endoplasmic reticulum membrane and endosome membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC1 (zinc finger DHHC-type containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291967; membrane-associated DHHC1 zinc finger protein; palmitoyltransferase ZDHHC1; probable palmitoyltransferase ZDHHC1; zinc finger, DHHC domain containing 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,260,445 - 50,285,634 (-)NCBIGRCr8
mRatBN7.21933,350,533 - 33,375,717 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,350,533 - 33,375,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,166,123 - 40,191,049 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,819,451 - 40,844,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,110,095 - 43,142,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,428,959 - 37,454,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,428,959 - 37,454,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,294,576 - 48,319,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,288,675 - 35,314,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1932,778,838 - 32,803,771 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15603741   PMID:16647879   PMID:19056867   PMID:23034182   PMID:23687301   PMID:25299331  


Genomics

Comparative Map Data
Zdhhc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,260,445 - 50,285,634 (-)NCBIGRCr8
mRatBN7.21933,350,533 - 33,375,717 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,350,533 - 33,375,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,166,123 - 40,191,049 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,819,451 - 40,844,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,110,095 - 43,142,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,428,959 - 37,454,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,428,959 - 37,454,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,294,576 - 48,319,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,288,675 - 35,314,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1932,778,838 - 32,803,771 (-)NCBICelera
Cytogenetic Map19q12NCBI
ZDHHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,394,152 - 67,416,477 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,394,152 - 67,416,833 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,428,055 - 67,450,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,985,829 - 66,007,878 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,985,828 - 66,007,878NCBI
Celera1651,936,522 - 51,958,539 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,301,558 - 53,323,519 (-)NCBIHuRef
CHM1_11668,835,705 - 68,857,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBIT2T-CHM13v2.0
Zdhhc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,199,055 - 106,223,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,199,055 - 106,223,534 (-)EnsemblGRCm39 Ensembl
GRCm388105,472,419 - 105,497,062 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,472,423 - 105,496,902 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,996,325 - 108,020,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,361,554 - 108,385,999 (-)NCBIMGSCv36mm8
Celera8109,695,617 - 109,720,060 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Zdhhc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,234,319 - 9,245,894 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,224,559 - 9,245,894 (+)NCBIChiLan1.0ChiLan1.0
ZDHHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,924,075 - 76,946,138 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,836,755 - 82,858,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,739,857 - 47,761,887 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,129,090 - 67,150,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,129,091 - 67,142,001 (-)Ensemblpanpan1.1panPan2
ZDHHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,985,974 - 82,006,877 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,985,998 - 82,006,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,975,651 - 81,996,458 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,421,311 - 82,442,105 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,421,230 - 82,442,095 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,247,436 - 82,268,237 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,928,559 - 81,949,345 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,571,977 - 82,592,795 (+)NCBIUU_Cfam_GSD_1.0
Zdhhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,719,938 - 41,739,343 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,849,802 - 17,861,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,849,772 - 17,869,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,049,949 - 28,071,540 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,046,099 - 28,071,535 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,317,029 - 25,338,632 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,040,264 - 60,062,531 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,040,266 - 60,062,548 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,789,567 - 22,811,886 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,901,589 - 18,922,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,901,622 - 18,921,798 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zdhhc1
72 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:51
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000066636
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 16 8 8 11 33 26 30 11 8
Low 27 43 35 19 35 41 9 11
Below cutoff 6 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY886520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000066636   ⟹   ENSRNOP00000060094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,350,533 - 33,363,945 (-)Ensembl
Rnor_6.0 Ensembl1937,428,959 - 37,440,471 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,355,467 - 33,375,616 (-)Ensembl
Rnor_6.0 Ensembl1937,433,893 - 37,454,040 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092844   ⟹   ENSRNOP00000076042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,428,959 - 37,448,067 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,354,583 - 33,357,953 (-)Ensembl
Rnor_6.0 Ensembl1937,433,009 - 37,436,379 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1933,361,889 - 33,366,488 (-)Ensembl
Rnor_6.0 Ensembl1937,440,315 - 37,444,912 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,429,360 - 37,433,126 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,428,961 - 37,444,602 (-)Ensembl
RefSeq Acc Id: NM_001039099   ⟹   NP_001034188
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,375 (-)NCBI
mRatBN7.21933,350,533 - 33,375,465 (-)NCBI
Rnor_6.01937,428,959 - 37,453,889 (-)NCBI
Rnor_5.01948,294,576 - 48,319,729 (-)NCBI
RGSC_v3.41935,288,675 - 35,314,178 (-)RGD
Celera1932,778,838 - 32,803,771 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772485   ⟹   XP_008770707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,625 (-)NCBI
mRatBN7.21933,350,533 - 33,375,581 (-)NCBI
Rnor_6.01937,428,959 - 37,454,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601225   ⟹   XP_017456714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,627 (-)NCBI
mRatBN7.21933,350,533 - 33,375,716 (-)NCBI
Rnor_6.01937,428,959 - 37,454,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601226   ⟹   XP_017456715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,279,378 (-)NCBI
mRatBN7.21933,350,533 - 33,366,708 (-)NCBI
Rnor_6.01937,428,959 - 37,445,123 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601227   ⟹   XP_017456716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,634 (-)NCBI
mRatBN7.21933,350,533 - 33,375,715 (-)NCBI
Rnor_6.01937,428,959 - 37,454,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601228   ⟹   XP_017456717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,628 (-)NCBI
mRatBN7.21933,350,533 - 33,375,717 (-)NCBI
Rnor_6.01937,428,959 - 37,454,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601229   ⟹   XP_017456718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,627 (-)NCBI
mRatBN7.21933,350,533 - 33,375,716 (-)NCBI
Rnor_6.01937,428,959 - 37,454,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097614   ⟹   XP_038953542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,266,946 (-)NCBI
mRatBN7.21933,350,533 - 33,355,738 (-)NCBI
RefSeq Acc Id: XM_039097615   ⟹   XP_038953543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,266,939 (-)NCBI
mRatBN7.21933,350,533 - 33,357,026 (-)NCBI
RefSeq Acc Id: XM_063277915   ⟹   XP_063133985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,624 (-)NCBI
RefSeq Acc Id: XM_063277917   ⟹   XP_063133987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,627 (-)NCBI
RefSeq Acc Id: XM_063277918   ⟹   XP_063133988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,626 (-)NCBI
RefSeq Acc Id: XM_063277919   ⟹   XP_063133989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,285,626 (-)NCBI
RefSeq Acc Id: XM_063277920   ⟹   XP_063133990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81950,260,445 - 50,265,360 (-)NCBI
RefSeq Acc Id: NP_001034188   ⟸   NM_001039099
- UniProtKB: Q2TGK5 (UniProtKB/TrEMBL),   F7F2Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770707   ⟸   XM_008772485
- Peptide Label: isoform X1
- UniProtKB: F7F2Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456714   ⟸   XM_017601225
- Peptide Label: isoform X1
- UniProtKB: F7F2Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456717   ⟸   XM_017601228
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456716   ⟸   XM_017601227
- Peptide Label: isoform X2
- UniProtKB: Q2TGK5 (UniProtKB/TrEMBL),   F7F2Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456718   ⟸   XM_017601229
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017456715   ⟸   XM_017601226
- Peptide Label: isoform X1
- UniProtKB: F7F2Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000076042   ⟸   ENSRNOT00000092844
RefSeq Acc Id: ENSRNOP00000060094   ⟸   ENSRNOT00000066636
RefSeq Acc Id: XP_038953543   ⟸   XM_039097615
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038953542   ⟸   XM_039097614
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063133987   ⟸   XM_063277917
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133988   ⟸   XM_063277918
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063133989   ⟸   XM_063277919
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063133985   ⟸   XM_063277915
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133990   ⟸   XM_063277920
- Peptide Label: isoform X7
Protein Domains
Palmitoyltransferase DHHC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2TGK5-F1-model_v2 AlphaFold Q2TGK5 1-488 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701078
Promoter ID:EPDNEW_R11601
Type:initiation region
Name:Zdhhc1_1
Description:zinc finger, DHHC-type containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,454,123 - 37,454,183EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589775 AgrOrtholog
BioCyc Gene G2FUF-5829 BioCyc
Ensembl Genes ENSRNOG00000017045 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066636.2 UniProtKB/TrEMBL
  ENSRNOT00000092817.2 UniProtKB/TrEMBL
  ENSRNOT00000092904.2 UniProtKB/TrEMBL
  ENSRNOT00000092984.2 UniProtKB/TrEMBL
InterPro Znf_DHHC UniProtKB/TrEMBL
KEGG Report rno:291967 UniProtKB/TrEMBL
NCBI Gene 291967 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC1 UniProtKB/TrEMBL
  ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam zf-DHHC UniProtKB/TrEMBL
PhenoGen Zdhhc1 PhenoGen
PROSITE DHHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017045 RatGTEx
UniProt A0A8I5ZJF1_RAT UniProtKB/TrEMBL
  A0A8I6AT65_RAT UniProtKB/TrEMBL
  A0A8I6GMF5_RAT UniProtKB/TrEMBL
  F7F2Z1 ENTREZGENE, UniProtKB/TrEMBL
  Q2TGK5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-15 Zdhhc1  zinc finger, DHHC-type containing 1  Zdhhc1  zinc finger, DHHC domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Zdhhc1  zinc finger, DHHC domain containing 1  LOC291967  membrane-associated DHHC1 zinc finger protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC291967  membrane-associated DHHC1 zinc finger protein      Symbol and Name status set to provisional 70820 PROVISIONAL