Zdhhc1 (zinc finger, DHHC-type containing 1) - Rat Genome Database

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Gene: Zdhhc1 (zinc finger, DHHC-type containing 1) Rattus norvegicus
Analyze
Symbol: Zdhhc1
Name: zinc finger, DHHC-type containing 1
RGD ID: 1589775
Description: Predicted to have protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in several processes, including antiviral innate immune response; peptidyl-L-cysteine S-palmitoylation; and positive regulation of defense response to virus by host. Predicted to localize to Golgi apparatus; endoplasmic reticulum membrane; and endosome membrane. Orthologous to human ZDHHC1 (zinc finger DHHC-type containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC291967; membrane-associated DHHC1 zinc finger protein; palmitoyltransferase ZDHHC1; probable palmitoyltransferase ZDHHC1; zinc finger, DHHC domain containing 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,350,533 - 33,375,717 (-)NCBI
Rnor_6.0 Ensembl1937,428,959 - 37,454,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01937,428,959 - 37,454,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01948,294,576 - 48,319,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,288,675 - 35,314,178 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1932,778,838 - 32,803,771 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:15603741   PMID:16647879   PMID:19056867   PMID:23034182   PMID:23687301   PMID:25299331  


Genomics

Comparative Map Data
Zdhhc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,350,533 - 33,375,717 (-)NCBI
Rnor_6.0 Ensembl1937,428,959 - 37,454,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01937,428,959 - 37,454,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01948,294,576 - 48,319,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,288,675 - 35,314,178 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1932,778,838 - 32,803,771 (-)NCBICelera
Cytogenetic Map19q12NCBI
ZDHHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1667,394,152 - 67,416,833 (-)EnsemblGRCh38hg38GRCh38
GRCh381667,394,152 - 67,416,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371667,428,055 - 67,450,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,985,829 - 66,007,878 (-)NCBINCBI36hg18NCBI36
Build 341665,985,828 - 66,007,878NCBI
Celera1651,936,522 - 51,958,539 (-)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1653,301,558 - 53,323,519 (-)NCBIHuRef
CHM1_11668,835,705 - 68,857,780 (-)NCBICHM1_1
Zdhhc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,199,055 - 106,223,694 (-)NCBIGRCm39mm39
GRCm39 Ensembl8106,199,055 - 106,223,534 (-)Ensembl
GRCm388105,472,419 - 105,497,062 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,472,423 - 105,496,902 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,996,325 - 108,020,770 (-)NCBIGRCm37mm9NCBIm37
MGSCv368108,361,554 - 108,385,999 (-)NCBImm8
Celera8109,695,617 - 109,720,060 (-)NCBICelera
Cytogenetic Map8D3NCBI
Zdhhc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,234,319 - 9,245,894 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,224,559 - 9,245,894 (+)NCBIChiLan1.0ChiLan1.0
ZDHHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11667,129,090 - 67,150,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,129,091 - 67,142,001 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01647,739,857 - 47,761,887 (-)NCBIMhudiblu_PPA_v0panPan3
ZDHHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,985,974 - 82,006,877 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,985,998 - 82,006,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,975,651 - 81,996,458 (+)NCBI
ROS_Cfam_1.0582,421,311 - 82,442,105 (+)NCBI
UMICH_Zoey_3.1582,247,436 - 82,268,237 (+)NCBI
UNSW_CanFamBas_1.0581,928,559 - 81,949,345 (+)NCBI
UU_Cfam_GSD_1.0582,571,977 - 82,592,795 (+)NCBI
Zdhhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,719,938 - 41,739,343 (+)NCBI
SpeTri2.0NW_00493647517,849,772 - 17,869,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,049,955 - 28,071,534 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,046,099 - 28,071,535 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,317,029 - 25,338,632 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,040,264 - 60,062,531 (+)NCBI
ChlSab1.1 Ensembl560,040,266 - 60,062,548 (+)Ensembl
Vero_WHO_p1.0NW_02366604722,789,567 - 22,811,886 (+)NCBI
Zdhhc1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474618,901,622 - 18,921,798 (+)NCBI


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19138221845Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19138221845Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19138221845Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19138221845Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19104464846044648Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19195770746957707Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19243296347217667Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)19370183548701835Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)19370183548701835Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19500757143907843Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19807254547318201Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191130392747879277Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191593952838798459Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191702800352538299Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191899398262275575Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191917749562275575Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)192140778762275575Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192445572643907843Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192481825762275575Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)193119430141686140Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)193119430141686140Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)193119430141686140Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)193299439262275575Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:51
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000066636
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 16 8 8 11 33 26 30 11 8
Low 27 43 35 19 35 41 9 11
Below cutoff 6 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY886520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066636   ⟹   ENSRNOP00000060094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,428,959 - 37,440,471 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092817
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,433,893 - 37,454,040 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092844   ⟹   ENSRNOP00000076042
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,428,959 - 37,448,067 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092904
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,433,009 - 37,436,379 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092984
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,440,315 - 37,444,912 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,429,360 - 37,433,126 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093020
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1937,428,961 - 37,444,602 (-)Ensembl
RefSeq Acc Id: NM_001039099   ⟹   NP_001034188
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,465 (-)NCBI
Rnor_6.01937,428,959 - 37,453,889 (-)NCBI
Rnor_5.01948,294,576 - 48,319,729 (-)NCBI
RGSC_v3.41935,288,675 - 35,314,178 (-)RGD
Celera1932,778,838 - 32,803,771 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772485   ⟹   XP_008770707
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,581 (-)NCBI
Rnor_6.01937,428,959 - 37,454,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601225   ⟹   XP_017456714
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,716 (-)NCBI
Rnor_6.01937,428,959 - 37,454,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601226   ⟹   XP_017456715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,366,708 (-)NCBI
Rnor_6.01937,428,959 - 37,445,123 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601227   ⟹   XP_017456716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,715 (-)NCBI
Rnor_6.01937,428,959 - 37,454,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601228   ⟹   XP_017456717
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,717 (-)NCBI
Rnor_6.01937,428,959 - 37,454,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601229   ⟹   XP_017456718
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,716 (-)NCBI
Rnor_6.01937,428,959 - 37,454,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097611   ⟹   XP_038953539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,716 (-)NCBI
RefSeq Acc Id: XM_039097612   ⟹   XP_038953540
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,375,581 (-)NCBI
RefSeq Acc Id: XM_039097613   ⟹   XP_038953541
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,361,934 (-)NCBI
RefSeq Acc Id: XM_039097614   ⟹   XP_038953542
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,355,738 (-)NCBI
RefSeq Acc Id: XM_039097615   ⟹   XP_038953543
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21933,350,533 - 33,357,026 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001034188   ⟸   NM_001039099
- UniProtKB: Q2TGK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770707   ⟸   XM_008772485
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456714   ⟸   XM_017601225
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456717   ⟸   XM_017601228
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456716   ⟸   XM_017601227
- Peptide Label: isoform X2
- UniProtKB: Q2TGK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456718   ⟸   XM_017601229
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017456715   ⟸   XM_017601226
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000076042   ⟸   ENSRNOT00000092844
RefSeq Acc Id: ENSRNOP00000060094   ⟸   ENSRNOT00000066636
RefSeq Acc Id: XP_038953539   ⟸   XM_039097611
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953540   ⟸   XM_039097612
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953541   ⟸   XM_039097613
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038953543   ⟸   XM_039097615
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038953542   ⟸   XM_039097614
- Peptide Label: isoform X6
Protein Domains
DHHC

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701078
Promoter ID:EPDNEW_R11601
Type:initiation region
Name:Zdhhc1_1
Description:zinc finger, DHHC-type containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01937,454,123 - 37,454,183EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589775 AgrOrtholog
Ensembl Genes ENSRNOG00000017045 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060094 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000076042 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066636 UniProtKB/TrEMBL
  ENSRNOT00000092844 ENTREZGENE, UniProtKB/TrEMBL
InterPro Znf_DHHC UniProtKB/TrEMBL
KEGG Report rno:291967 UniProtKB/TrEMBL
NCBI Gene 291967 ENTREZGENE
Pfam zf-DHHC UniProtKB/TrEMBL
PhenoGen Zdhhc1 PhenoGen
UniProt Q2TGK5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-15 Zdhhc1  zinc finger, DHHC-type containing 1  Zdhhc1  zinc finger, DHHC domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Zdhhc1  zinc finger, DHHC domain containing 1  LOC291967  membrane-associated DHHC1 zinc finger protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC291967  membrane-associated DHHC1 zinc finger protein      Symbol and Name status set to provisional 70820 PROVISIONAL