Zdhhc1 (zinc finger, DHHC-type containing 1)

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Gene: Zdhhc1 (zinc finger, DHHC-type containing 1) Rattus norvegicus

Analyze

Symbol:

Zdhhc1

Name:

zinc finger, DHHC-type containing 1

RGD ID:

1589775

Description:

Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in several processes, including antiviral innate immune response; peptidyl-L-cysteine S-palmitoylation; and positive regulation of defense response to virus by host. Predicted to act upstream of or within protein palmitoylation. Predicted to be located in endoplasmic reticulum membrane and endosome membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC1 (zinc finger DHHC-type containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC291967; membrane-associated DHHC1 zinc finger protein; palmitoyltransferase ZDHHC1; probable palmitoyltransferase ZDHHC1; zinc finger, DHHC domain containing 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZDHHC1 (zinc finger DHHC-type containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zdhhc1 (zinc finger, DHHC domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zdhhc1 (zinc finger DHHC-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZDHHC1 (zinc finger DHHC-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZDHHC1 (zinc finger DHHC-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zdhhc1 (zinc finger DHHC-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZDHHC1 (zinc finger DHHC-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZDHHC1 (zinc finger DHHC-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zdhhc1 (zinc finger DHHC-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zdhhc1 (zinc finger, DHHC domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZDHHC1 (zinc finger DHHC-type containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zdhhc1 (zinc finger, DHHC-type containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17075	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dhhc-11	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zdhhc1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	33,350,533 - 33,375,717 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,350,533 - 33,375,616 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	40,166,123 - 40,191,049 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,819,451 - 40,844,381 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	43,110,095 - 43,142,033 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	37,428,959 - 37,454,150 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,428,959 - 37,454,040 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	48,294,576 - 48,319,729 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,288,675 - 35,314,178 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	32,778,838 - 32,803,771 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 6 (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclophosphamide (EXP)

dexamethasone (ISO)

endosulfan (EXP)

formaldehyde (ISO)

fulvestrant (ISO)

indometacin (ISO)

paracetamol (EXP)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antiviral innate immune response (ISO)

peptidyl-L-cysteine S-palmitoylation (IBA,ISO)

positive regulation of defense response to virus by host (ISO)

positive regulation of protein localization to endosome (ISO)

positive regulation of protein oligomerization (ISO)

protein palmitoylation (ISO)

protein targeting to membrane (IBA)

Cellular Component

endoplasmic reticulum (IBA,ISO)

endoplasmic reticulum membrane (ISO)

endosome membrane (ISO)

Golgi apparatus (IBA,ISO)

Molecular Function

palmitoyltransferase activity (ISO)

protein binding (ISO)

protein-cysteine S-palmitoyltransferase activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15603741	PMID:16647879	PMID:19056867	PMID:23034182	PMID:23687301	PMID:25299331

Genomics

Comparative Map Data

Zdhhc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	33,350,533 - 33,375,717 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,350,533 - 33,375,616 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	40,166,123 - 40,191,049 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	40,819,451 - 40,844,381 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	43,110,095 - 43,142,033 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	37,428,959 - 37,454,150 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,428,959 - 37,454,040 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	48,294,576 - 48,319,729 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,288,675 - 35,314,178 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	32,778,838 - 32,803,771 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

ZDHHC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,394,152 - 67,416,477 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	16	67,394,152 - 67,416,833 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	67,428,055 - 67,450,380 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	65,985,829 - 66,007,878 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	65,985,828 - 66,007,878	NCBI
Celera	16	51,936,522 - 51,958,539 (-)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,301,558 - 53,323,519 (-)	NCBI		HuRef
CHM1_1	16	68,835,705 - 68,857,722 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	73,188,923 - 73,211,253 (-)	NCBI		T2T-CHM13v2.0

Zdhhc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,199,055 - 106,223,694 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,199,055 - 106,223,534 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	105,472,419 - 105,497,062 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,472,423 - 105,496,902 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	107,996,325 - 108,020,770 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,361,554 - 108,385,999 (-)	NCBI		MGSCv36	mm8
Celera	8	109,695,617 - 109,720,060 (-)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI

Zdhhc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	9,234,319 - 9,245,894 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	9,224,559 - 9,245,894 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZDHHC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	16	82,836,755 - 82,858,767 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	47,739,857 - 47,761,887 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	67,129,090 - 67,150,646 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,129,091 - 67,142,001 (-)	Ensembl	panpan1.1		panPan2

ZDHHC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,985,974 - 82,006,877 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,985,998 - 82,006,885 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,975,651 - 81,996,458 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,421,311 - 82,442,105 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,421,230 - 82,442,095 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	82,247,436 - 82,268,237 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	81,928,559 - 81,949,345 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,571,977 - 82,592,795 (+)	NCBI		UU_Cfam_GSD_1.0

Zdhhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,719,938 - 41,739,343 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	17,849,802 - 17,861,465 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936475	17,849,772 - 17,869,140 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZDHHC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,049,949 - 28,071,540 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	28,046,099 - 28,071,535 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	25,317,029 - 25,338,632 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZDHHC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	60,040,264 - 60,062,531 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	60,040,266 - 60,062,548 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	22,789,567 - 22,811,886 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zdhhc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	18,901,589 - 18,922,066 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	18,901,622 - 18,921,798 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zdhhc1
69 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	51
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000066636
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15114598	34521833	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	24817978	39654489	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	27530207	37947399	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	27530207	37947399	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	27530207	37947399	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	16	8				8	11	33	26	30	11	8
Low		27	43	35	19	35			41	9	11
Below cutoff			6	6		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY886520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC160816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000066636 ⟹ ENSRNOP00000060094

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	33,350,533 - 33,363,945 (-)	Ensembl
Rnor_6.0 Ensembl	19	37,428,959 - 37,440,471 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092817

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	33,355,467 - 33,375,616 (-)	Ensembl
Rnor_6.0 Ensembl	19	37,433,893 - 37,454,040 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092844 ⟹ ENSRNOP00000076042

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	37,428,959 - 37,448,067 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092904

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	33,354,583 - 33,357,953 (-)	Ensembl
Rnor_6.0 Ensembl	19	37,433,009 - 37,436,379 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092984

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	33,361,889 - 33,366,488 (-)	Ensembl
Rnor_6.0 Ensembl	19	37,440,315 - 37,444,912 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092989

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	37,429,360 - 37,433,126 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093020

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	37,428,961 - 37,444,602 (-)	Ensembl

RefSeq Acc Id:

NM_001039099 ⟹ NP_001034188

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,465 (-)	NCBI
Rnor_6.0	19	37,428,959 - 37,453,889 (-)	NCBI
Rnor_5.0	19	48,294,576 - 48,319,729 (-)	NCBI
RGSC_v3.4	19	35,288,675 - 35,314,178 (-)	RGD
Celera	19	32,778,838 - 32,803,771 (-)	RGD

Sequence:

show sequence

CGGCCGCAACCACGCGCAGGCATTCATCCTGAAGTCGTGGGCAAGTGGTACCTCTCTGGACCAA
CAGTATCCTCATTTGGAGTCAAAGCTACCCCTACGACTATTTGCAGCAAGCCTTAGGATGATGA
TTCCTCCTGCCTTAGGACTCTGGGCTGGGTGTGGTGGCACATGCCTGTCATCCTGGCCCTGAGG
AGGATCAGGTAGATCAAGACCAGCTATGGCAACATAGTGAATATTTTCAAGTCAGCGAACATTC
ACTGAGCATCTACTGTATACAAGATGAACATCTGCAACAAACCCTCCAACAAGACAGCCCCTGA
GAAGAATGTGTGGACAGCGCCCTCACAGGACAGTGGACCTTCCCCAGAACTGCAGGGCCAGCGG
TCCCGACGGAATGGATGGAGCTGGCCCCCCCACCCACTCCAGATTGTGGCCTGGCTGCTCTACC
TCTTCTTCGCAGTGATTGGCTTTGGGGTCCTTGTTCCCCTCCTGCCTCACCACTGGGTGCCTGC
TGGCTATGCTTGCATGGGTGCCATCTTTGCTGGCCACCTTGTGGTGCACCTGACTGCTGTCTCC
ATCGATCCAGCAGATGCCAATGTGCGGGACAAGAGCTATTCTGGACCCCTGCCTATCTTCAACC
GCAGCCAGCACGCACATGTCATTGAAGATCTACACTGCAACCTGTGTGACGTGGATGTGAGTGC
GCGATCCAAACACTGCAGTGCCTGCAATAAATGTGTATGTGGCTTCGATCATCATTGCAAGTGG
CTTAACAACTGCGTGGGCGAGAGGAACTACCGGCTCTTTCTACACAGTGTGGCATCTGCTTTAC
TGGGTGTTCTGCTCCTGGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGTCAACCCCAT
GCGCCTTCGCACCAACCAACACTTTGAAGTCTTGAAGAATCACACAGATGTGTGGTTTGTGTTC
TTGCCGGCTGCCCCTGTGGAGACCCAGGCTCCTGCCATCCTGGCCCTGGCTGCCCTACTCATCC
TTCTGGGCCTGCTTTCTACAGCCCTGCTTGGCCACTTGCTCTGCTTCCACATTTATTTAATGTG
GCACAAGCTCACCACCTACGAATACATTGTGCAGCACCGACCAGCTCAGGAAGCAAAGGAGACC
CACAAGGAGCTTGAGTCATGTCCCCGCAAGATGCGGTCCATTCAGGAGATGGAGTTCTACATGA
GGACCTTCAGCCATGTGCGTCCAGAGCCCTCTGGGCAGGCCAGGCCAGCAGCATTAAATGCCAA
TCCTTCCCAGTTTCTTGCCACACAAGGCCAAGTGGAACCACCACTGCCCTCCTCCTCAGACACA
CTGGCTCTGCCTCCACGGATCCAACCCCAGGAAAAGAGGAAGCGGCGAGTATATAGATTGCCCA
GGTCTGGGACCATGGACCGAGAGCTCCGGCTGCCCAAGCTACGTGACACTGGGACTCCTAGCCG
CCACGCTAGCCCTTCCTCTGATTCCACCAGTGCCAGCCCAGCACATGCTGGTTGCTCTGTAGAC
GCCTACTCCTCGGCATCAGCGGAATCCATGGAAGAGATCCCAGTGGCCCAGACCCGCCTGGGCA
GTGCCGCACTGGGTGCCCCAGGAGCCGGGGGCCGAGAGTCTAGGCTGGCTCTACAGGCACGTTT
GCCTGCTGTTTTTGTGAGCCCAAGCAGTGGCGAGCCCGGAACACCTGAGGCGGTGAAGATGGCT
TGCCTTAGTGGGGACTAGAGGCAGGAGGGCCTTGCAGGGACGTCTGACCACTCTATGCAACACC
CCATATTCGCCGCAATGAGTGCACTTTAGGGATCAGCGTTCCTTACCCAAGACTCAGCAATATC
TGCTCCACCAGCCCTGATGCCCCAATAAACTTTTTTTTTAATGCTTTAAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

XM_008772485 ⟹ XP_008770707

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,581 (-)	NCBI
Rnor_6.0	19	37,428,959 - 37,454,150 (-)	NCBI

Sequence:

show sequence

GCCAGGGGAACGGGCTCCGCGCCCGGGAAGGCCCAGCCTGCCTTGGCCTGGCAAGGCTGCACAG
CCAGCGGGTCCGAACTAAGGCGGAAGGACTCTGAGGCCCAACCTCCGTCCAGGATGGAGCTGCG
TTCCGGGACGCGTCTCCTCCGTGTCCGGGGGACTGACTCTGCCCAGACAGTCTGAAGTGCAGCC
GCCCTGGGGAGGGTGGACGGGCAGGGCGGGGCCGAGCCGCTGGCTGACCTTGGCAGGCTGCATC
TGGCGCGGCCGCCACCACGCGCAGGCATTCATCCTGAAGTCGTGGGCAAGTGGTACCTCTCTGG
ACCAACAGTATCCTCATTTGGAGTCAAAGCTACCCCTACGACTATTTGCAGCAAGCCTTAGGAT
GATGATTCCTCCTGCCTTAGGACTCTGGGCTGGGTGTGGTGGCACATGCCTGTCATCCTGGCCC
TGAGGAGGATCAGGTAGATCAAGACCAGCTATGGCAACATAATATTTTCAAGTCAGCGAACATT
CACTGAGCATCTACTGTATACAAGATGAACATCTGCAACAAACCCTCCAACAAGACAGCCCCTG
AGAAGAATGTGTGGACAGCGCCCTCACAGGACAGTGGACCTTCCCCAGAACTGCAGGGCCAGCG
GTCCCGACGGAATGGATGGAGCTGGCCCCCCCACCCACTCCAGATTGTGGCCTGGCTGCTCTAC
CTCTTCTTCGCAGTGATTGGCTTTGGGGTCCTTGTTCCCCTCCTGCCTCACCACTGGGTGCCTG
CTGGCTATGCTTGCATGGGTGCCATCTTTGCTGGCCACCTTGTGGTGCACCTGACTGCTGTCTC
CATCGATCCAGCAGATGCCAATGTGCGGGACAAGAGCTATTCTGGACCCCTGCCTATCTTCAAC
CGCAGCCAGCACGCACATGTCATTGAAGATCTACACTGCAACCTGTGTGACGTGGATGTGAGTG
CGCGATCCAAACACTGCAGTGCCTGCAATAAATGTGTATGTGGCTTCGATCATCATTGCAAGTG
GCTTAACAACTGCGTGGGCGAGAGGAACTACCGGCTCTTTCTACACAGTGTGGCATCTGCTTTA
CTGGGTGTTCTGCTCCTGGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGTCAACCCCA
TGCGCCTTCGCACCAACCAACACTTTGAAGTCTTGAAGAATCACACAGATGTGTGGTTTGTGTT
CTTGCCGGCTGCCCCTGTGGAGACCCAGGCTCCTGCCATCCTGGCCCTGGCTGCCCTACTCATC
CTTCTGGGCCTGCTTTCTACAGCCCTGCTTGGCCACTTGCTCTGCTTCCACATTTATTTAATGT
GGCACAAGCTCACCACCTACGAATACATTGTGCAGCACCGACCAGCTCAGGAAGCAAAGGAGAC
CCACAAGGAGCTTGAGTCATGTCCCCGCAAGATGCGGTCCATTCAGGAGATGGAGTTCTACATG
AGGACCTTCAGCCATGTGCGTCCAGAGCCCTCTGGGCAGGCCAGGCCAGCAGCATTAAATGCCA
ATCCTTCCCAGTTTCTTGCCACACAAGGCCAAGTGGAACCACCACTGCCCTCCTCCTCAGACAC
ACTGGCTCTGCCTCCACGGATCCAACCCCAGTGGGGTCTGGAGACGCAGGCCACACTTCCTTTG
TCTTTACAGGAAAAGAGGAAGCGGCGAGTATATAGATTGCCCAGGTCTGGGACCATGGACCGAG
AGCTCCGGCTGCCCAAGCTACGTGACACTGGGACTCCTAGCCGCCACGCTAGCCCTTCCTCTGA
TTCCACCAGTGCCAGCCCAGCACATGCTGGTTGCTCTGTAGACGCCTACTCCTCGGCATCAGCG
GAATCCATGGAAGAGATCCCAGTGGCCCAGACCCGCCTGGGCAGTGCCGCACTGGGTGCCCCAG
GAGCCGGGGGCCGAGAGTCTAGGCTGGCTCTACAGGCACGTTTGCCTGCTGTTTTTGTGAGCCC
AAGCAGTGGCGAGCCCGGAACACCTGAGGCGGTGAAGATGGCTTGCCTTAGTGGGGACTAGAGG
CAGGAGGGCCTTGCAGGGACGTCTGACCACTCTATGCAACACCCCATATTCGCCGCAATGAGTG
CACTTTAGGGATCAGCGTTCCTTACCCAAGACTCAGCAATATCTGCTCCACCAGCCCTGATGCC
CCAATAAACTTTTTTTTTAATGCTTT

hide sequence

RefSeq Acc Id:

XM_017601225 ⟹ XP_017456714

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,716 (-)	NCBI
Rnor_6.0	19	37,428,959 - 37,454,150 (-)	NCBI

Sequence:

show sequence

GCCAGGGGAACGGGCTCCGCGCCCGGGAAGGCCCAGCCTGCCTTGGCCTGGCAAGGCTGCACAG
CCAGCGGGTCCGAACTAAGGCGGAAGGACTCTGAGGCCCAACCTCCGTCCAGGATGGAGCTGCG
TTCCGGGACGCGTCTCCTCCGTGTCCGGGGGACTGACTCTGCCCAGACAGTCTGAAGTGCAGCC
GCCCTGGGGAGGGTGGACGGGCAGGGCGGGGCCGAGCCGCTGGCTGACCTTGGCAGGCTGCATC
TGGCGCGGCCGCCACCACGCGCAGCTGGGTGTGGTGGCACATGCCTGTCATCCTGGCCCTGAGG
AGGATCAGGTAGATCAAGACCAGCTATGGCAACATAATATTTTCAAGTCAGCGAACATTCACTG
AGCATCTACTGTATACAAGATGAACATCTGCAACAAACCCTCCAACAAGACAGCCCCTGAGAAG
AATGTGTGGACAGCGCCCTCACAGGACAGTGGACCTTCCCCAGAACTGCAGGGCCAGCGGTCCC
GACGGAATGGATGGAGCTGGCCCCCCCACCCACTCCAGATTGTGGCCTGGCTGCTCTACCTCTT
CTTCGCAGTGATTGGCTTTGGGGTCCTTGTTCCCCTCCTGCCTCACCACTGGGTGCCTGCTGGC
TATGCTTGCATGGGTGCCATCTTTGCTGGCCACCTTGTGGTGCACCTGACTGCTGTCTCCATCG
ATCCAGCAGATGCCAATGTGCGGGACAAGAGCTATTCTGGACCCCTGCCTATCTTCAACCGCAG
CCAGCACGCACATGTCATTGAAGATCTACACTGCAACCTGTGTGACGTGGATGTGAGTGCGCGA
TCCAAACACTGCAGTGCCTGCAATAAATGTGTATGTGGCTTCGATCATCATTGCAAGTGGCTTA
ACAACTGCGTGGGCGAGAGGAACTACCGGCTCTTTCTACACAGTGTGGCATCTGCTTTACTGGG
TGTTCTGCTCCTGGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGTCAACCCCATGCGC
CTTCGCACCAACCAACACTTTGAAGTCTTGAAGAATCACACAGATGTGTGGTTTGTGTTCTTGC
CGGCTGCCCCTGTGGAGACCCAGGCTCCTGCCATCCTGGCCCTGGCTGCCCTACTCATCCTTCT
GGGCCTGCTTTCTACAGCCCTGCTTGGCCACTTGCTCTGCTTCCACATTTATTTAATGTGGCAC
AAGCTCACCACCTACGAATACATTGTGCAGCACCGACCAGCTCAGGAAGCAAAGGAGACCCACA
AGGAGCTTGAGTCATGTCCCCGCAAGATGCGGTCCATTCAGGAGATGGAGTTCTACATGAGGAC
CTTCAGCCATGTGCGTCCAGAGCCCTCTGGGCAGGCCAGGCCAGCAGCATTAAATGCCAATCCT
TCCCAGTTTCTTGCCACACAAGGCCAAGTGGAACCACCACTGCCCTCCTCCTCAGACACACTGG
CTCTGCCTCCACGGATCCAACCCCAGTGGGGTCTGGAGACGCAGGCCACACTTCCTTTGTCTTT
ACAGGAAAAGAGGAAGCGGCGAGTATATAGATTGCCCAGGTCTGGGACCATGGACCGAGAGCTC
CGGCTGCCCAAGCTACGTGACACTGGGACTCCTAGCCGCCACGCTAGCCCTTCCTCTGATTCCA
CCAGTGCCAGCCCAGCACATGCTGGTTGCTCTGTAGACGCCTACTCCTCGGCATCAGCGGAATC
CATGGAAGAGATCCCAGTGGCCCAGACCCGCCTGGGCAGTGCCGCACTGGGTGCCCCAGGAGCC
GGGGGCCGAGAGTCTAGGCTGGCTCTACAGGCACGTTTGCCTGCTGTTTTTGTGAGCCCAAGCA
GTGGCGAGCCCGGAACACCTGAGGCGGTGAAGATGGCTTGCCTTAGTGGGGACTAGAGGCAGGA
GGGCCTTGCAGGGACGTCTGACCACTCTATGCAACACCCCATATTCGCCGCAATGAGTGCACTT
TAGGGATCAGCGTTCCTTACCCAAGACTCAGCAATATCTGCTCCACCAGCCCTGATGCCCCAAT
AAACTTTTTTTTTAATGCTTT

hide sequence

RefSeq Acc Id:

XM_017601226 ⟹ XP_017456715

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,366,708 (-)	NCBI
Rnor_6.0	19	37,428,959 - 37,445,123 (-)	NCBI

Sequence:

show sequence

TGCCTGGTGCCTGTGGGGGCTAGAAGAGGGTGTCAGATCCCTGGAAGTAGAGATACAGCTCACT
AGCAGTTCTTCCAGAGGATTCAGATTCAACTGCCAGCATCCACATGGTAACTCATATATCTTAA
GTTGCCTCTCTTTTGAAAGGGTAGAGTGTGTCAGGAGTGATGACTCTGGTTCAGAGTACTTGCT
TCTCTTGGGTGCTTTGATTCCCAGAACCTATACCAAATGACTGTAACTGCCTGAGACTCAGTTC
CAGGGATCAGATGCCAACTCTGGACTCTGGGAACCTGCATTCATGCATATGTGCATAAGCACAT
GCTGACAATACATAAGCAACTGGGTGTGGTGGCACATGCCTGTCATCCTGGCCCTGAGGAGGAT
CAGGTAGATCAAGACCAGCTATGGCAACATAATATTTTCAAGTCAGCGAACATTCACTGAGCAT
CTACTGTATACAAGATGAACATCTGCAACAAACCCTCCAACAAGACAGCCCCTGAGAAGAATGT
GTGGACAGCGCCCTCACAGGACAGTGGACCTTCCCCAGAACTGCAGGGCCAGCGGTCCCGACGG
AATGGATGGAGCTGGCCCCCCCACCCACTCCAGATTGTGGCCTGGCTGCTCTACCTCTTCTTCG
CAGTGATTGGCTTTGGGGTCCTTGTTCCCCTCCTGCCTCACCACTGGGTGCCTGCTGGCTATGC
TTGCATGGGTGCCATCTTTGCTGGCCACCTTGTGGTGCACCTGACTGCTGTCTCCATCGATCCA
GCAGATGCCAATGTGCGGGACAAGAGCTATTCTGGACCCCTGCCTATCTTCAACCGCAGCCAGC
ACGCACATGTCATTGAAGATCTACACTGCAACCTGTGTGACGTGGATGTGAGTGCGCGATCCAA
ACACTGCAGTGCCTGCAATAAATGTGTATGTGGCTTCGATCATCATTGCAAGTGGCTTAACAAC
TGCGTGGGCGAGAGGAACTACCGGCTCTTTCTACACAGTGTGGCATCTGCTTTACTGGGTGTTC
TGCTCCTGGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGTCAACCCCATGCGCCTTCG
CACCAACCAACACTTTGAAGTCTTGAAGAATCACACAGATGTGTGGTTTGTGTTCTTGCCGGCT
GCCCCTGTGGAGACCCAGGCTCCTGCCATCCTGGCCCTGGCTGCCCTACTCATCCTTCTGGGCC
TGCTTTCTACAGCCCTGCTTGGCCACTTGCTCTGCTTCCACATTTATTTAATGTGGCACAAGCT
CACCACCTACGAATACATTGTGCAGCACCGACCAGCTCAGGAAGCAAAGGAGACCCACAAGGAG
CTTGAGTCATGTCCCCGCAAGATGCGGTCCATTCAGGAGATGGAGTTCTACATGAGGACCTTCA
GCCATGTGCGTCCAGAGCCCTCTGGGCAGGCCAGGCCAGCAGCATTAAATGCCAATCCTTCCCA
GTTTCTTGCCACACAAGGCCAAGTGGAACCACCACTGCCCTCCTCCTCAGACACACTGGCTCTG
CCTCCACGGATCCAACCCCAGTGGGGTCTGGAGACGCAGGCCACACTTCCTTTGTCTTTACAGG
AAAAGAGGAAGCGGCGAGTATATAGATTGCCCAGGTCTGGGACCATGGACCGAGAGCTCCGGCT
GCCCAAGCTACGTGACACTGGGACTCCTAGCCGCCACGCTAGCCCTTCCTCTGATTCCACCAGT
GCCAGCCCAGCACATGCTGGTTGCTCTGTAGACGCCTACTCCTCGGCATCAGCGGAATCCATGG
AAGAGATCCCAGTGGCCCAGACCCGCCTGGGCAGTGCCGCACTGGGTGCCCCAGGAGCCGGGGG
CCGAGAGTCTAGGCTGGCTCTACAGGCACGTTTGCCTGCTGTTTTTGTGAGCCCAAGCAGTGGC
GAGCCCGGAACACCTGAGGCGGTGAAGATGGCTTGCCTTAGTGGGGACTAGAGGCAGGAGGGCC
TTGCAGGGACGTCTGACCACTCTATGCAACACCCCATATTCGCCGCAATGAGTGCACTTTAGGG
ATCAGCGTTCCTTACCCAAGACTCAGCAATATCTGCTCCACCAGCCCTGATGCCCCAATAAACT
TTTTTTTTAATGCTTT

hide sequence

RefSeq Acc Id:

XM_017601227 ⟹ XP_017456716

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,715 (-)	NCBI
Rnor_6.0	19	37,428,959 - 37,454,149 (-)	NCBI

Sequence:

show sequence

CCAGGGGAACGGGCTCCGCGCCCGGGAAGGCCCAGCCTGCCTTGGCCTGGCAAGGCTGCACAGC
CAGCGGGTCCGAACTAAGGCGGAAGGACTCTGAGGCCCAACCTCCGTCCAGGATGGAGCTGCGT
TCCGGGACGCGTCTCCTCCGTGTCCGGGGGACTGACTCTGCCCAGACAGTCTGAAGTGCAGCCG
CCCTGGGGAGGGTGGACGGGCAGGGCGGGGCCGAGCCGCTGGCTGACCTTGGCAGGCTGCATCT
GGCGCGGCCGCCACCACGCGCAGCTGGGTGTGGTGGCACATGCCTGTCATCCTGGCCCTGAGGA
GGATCAGGTAGATCAAGACCAGCTATGGCAACATAATATTTTCAAGTCAGCGAACATTCACTGA
GCATCTACTGTATACAAGATGAACATCTGCAACAAACCCTCCAACAAGACAGCCCCTGAGAAGA
ATGTGTGGACAGCGCCCTCACAGGACAGTGGACCTTCCCCAGAACTGCAGGGCCAGCGGTCCCG
ACGGAATGGATGGAGCTGGCCCCCCCACCCACTCCAGATTGTGGCCTGGCTGCTCTACCTCTTC
TTCGCAGTGATTGGCTTTGGGGTCCTTGTTCCCCTCCTGCCTCACCACTGGGTGCCTGCTGGCT
ATGCTTGCATGGGTGCCATCTTTGCTGGCCACCTTGTGGTGCACCTGACTGCTGTCTCCATCGA
TCCAGCAGATGCCAATGTGCGGGACAAGAGCTATTCTGGACCCCTGCCTATCTTCAACCGCAGC
CAGCACGCACATGTCATTGAAGATCTACACTGCAACCTGTGTGACGTGGATGTGAGTGCGCGAT
CCAAACACTGCAGTGCCTGCAATAAATGTGTATGTGGCTTCGATCATCATTGCAAGTGGCTTAA
CAACTGCGTGGGCGAGAGGAACTACCGGCTCTTTCTACACAGTGTGGCATCTGCTTTACTGGGT
GTTCTGCTCCTGGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGTCAACCCCATGCGCC
TTCGCACCAACCAACACTTTGAAGTCTTGAAGAATCACACAGATGTGTGGTTTGTGTTCTTGCC
GGCTGCCCCTGTGGAGACCCAGGCTCCTGCCATCCTGGCCCTGGCTGCCCTACTCATCCTTCTG
GGCCTGCTTTCTACAGCCCTGCTTGGCCACTTGCTCTGCTTCCACATTTATTTAATGTGGCACA
AGCTCACCACCTACGAATACATTGTGCAGCACCGACCAGCTCAGGAAGCAAAGGAGACCCACAA
GGAGCTTGAGTCATGTCCCCGCAAGATGCGGTCCATTCAGGAGATGGAGTTCTACATGAGGACC
TTCAGCCATGTGCGTCCAGAGCCCTCTGGGCAGGCCAGGCCAGCAGCATTAAATGCCAATCCTT
CCCAGTTTCTTGCCACACAAGGCCAAGTGGAACCACCACTGCCCTCCTCCTCAGACACACTGGC
TCTGCCTCCACGGATCCAACCCCAGGAAAAGAGGAAGCGGCGAGTATATAGATTGCCCAGGTCT
GGGACCATGGACCGAGAGCTCCGGCTGCCCAAGCTACGTGACACTGGGACTCCTAGCCGCCACG
CTAGCCCTTCCTCTGATTCCACCAGTGCCAGCCCAGCACATGCTGGTTGCTCTGTAGACGCCTA
CTCCTCGGCATCAGCGGAATCCATGGAAGAGATCCCAGTGGCCCAGACCCGCCTGGGCAGTGCC
GCACTGGGTGCCCCAGGAGCCGGGGGCCGAGAGTCTAGGCTGGCTCTACAGGCACGTTTGCCTG
CTGTTTTTGTGAGCCCAAGCAGTGGCGAGCCCGGAACACCTGAGGCGGTGAAGATGGCTTGCCT
TAGTGGGGACTAGAGGCAGGAGGGCCTTGCAGGGACGTCTGACCACTCTATGCAACACCCCATA
TTCGCCGCAATGAGTGCACTTTAGGGATCAGCGTTCCTTACCCAAGACTCAGCAATATCTGCTC
CACCAGCCCTGATGCCCCAATAAACTTTTTTTTTAATGCTTT

hide sequence

RefSeq Acc Id:

XM_017601228 ⟹ XP_017456717

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,717 (-)	NCBI
Rnor_6.0	19	37,428,959 - 37,454,150 (-)	NCBI

Sequence:

show sequence

GCCAGGGGAACGGGCTCCGCGCCCGGGAAGGCCCAGCCTGCCTTGGCCTGGCAAGGCTGCACAG
CCAGCGGGTCCGAACTAAGGCGGAAGGACTCTGAGGCCCAACCTCCGTCCAGGATGGAGCTGCG
TTCCGGGACGCGTCTCCTCCGTGTCCGGGGGACTGACTCTGCCCAGACAGTCTGAAGTGCAGCC
GCCCTGGGGAGGGTGGACGGGCAGGGCGGGGCCGAGCCGCTGGCTGACCTTGGCAGGCTGCATC
TGGCGCGGCCGCCACCACGCGCAGCTGGGTGTGGTGGCACATGCCTGTCATCCTGGCCCTGAGG
AGGATCAGGTAGATCAAGACCAGCTATGGCAACATAATATTTTCAAGTCAGCGAACATTCACTG
AGCATCTACTGTATACAAGATGAACATCTGCAACAAACCCTCCAACAAGACAGCCCCTGAGAAG
AATGTGTGGACAGCGCCCTCACAGGACAGTGGACCTTCCCCAGAACTGCAGGGCCAGCGGTCCC
GACGGAATGGATGGAGCTGGCCCCCCCACCCACTCCAGATTGTGGCCTGGCTGCTCTACCTCTT
CTTCGCAGTGATTGGCTTTGGGGTCCTTGTTCCCCTCCTGCCTCACCACTGGGTGCCTGCTGGC
TATGCTTGCATGGGTGCCATCTTTGCTGGCCACCTTGTGGTGCACCTGACTGCTGTCTCCATCG
ATCCAGCAGATGCCAATGTGCGGGACAAGAGCTATTCTGGACCCCTGCCTATCTTCAACCGCAG
CCAGCACGCACATGTCATTGAAGATCTACACTGCAACCTGTGTGACGTGGATGTGAGTGCGCGA
TCCAAACACTGCAGTGCCTGCAATAAATGTGTATGTGGCTTCGATCATCATTGCAAGTGGCTTA
ACAACTGCGTGGGCGAGAGGAACTACCGGCTCTTTCTACACAGTGTGGCATCTGCTTTACTGGG
TGTTCTGCTCCTGGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGTCAACCCCATGCGC
CTTCGCACCAACCAACACTTTGAAGTCTTGAAGAATCACACAGATGTGTGGTTTGTGTTCTTGC
CGGCTGCCCCTGTGGAGACCCAGGCTCCTGCCATCCTGGCCCTGGCTGCCCTACTCATCCTTCT
GGGCCTGCTTTCTACAGCCCTGCTTGGCCACTTGCTCTGCTTCCACATTTATTTAATGTGGCAC
AAGCTCACCACCTACGAATACATTGTGCAGCACCGACCAGCTCAGGAAGCAAAGGAGACCCACA
AGGAGCTTGAGTCATGTCCCCGCAAGATGCGGTCCATTCAGGAGATGGAGTTCTACATGAGGAC
CTTCAGCCATGTGCGTCCAGAGCCCTCTGGGCAGGCCAGGCCAGCAGCATTAAATGCCAAGAAG
GGAACCTCTAGCAGGAGGGACTCCGGGGCAGCATCTAGAGTTTGCTCTCTGGCTTTTACCTCAG
TCCTTCCCAGTTTCTTGCCACACAAGGCCAAGTGGAACCACCACTGCCCTCCTCCTCAGACACA
CTGGCTCTGCCTCCACGGATCCAACCCCAGTGGGGTCTGGAGACGCAGGCCACACTTCCTTTGT
CTTTACAGGAAAAGAGGAAGCGGCGAGTATATAGATTGCCCAGGTCTGGGACCATGGACCGAGA
GCTCCGGCTGCCCAAGCTACGTGACACTGGGACTCCTAGCCGCCACGCTAGCCCTTCCTCTGAT
TCCACCAGTGCCAGCCCAGCACATGCTGGTTGCTCTGTAGACGCCTACTCCTCGGCATCAGCGG
AATCCATGGAAGAGATCCCAGTGGCCCAGACCCGCCTGGGCAGTGCCGCACTGGGTGCCCCAGG
AGCCGGGGGCCGAGAGTCTAGGCTGGCTCTACAGGCACGTTTGCCTGCTGTTTTTGTGAGCCCA
AGCAGTGGCGAGCCCGGAACACCTGAGGCGGTGAAGATGGCTTGCCTTAGTGGGGACTAGAGGC
AGGAGGGCCTTGCAGGGACGTCTGACCACTCTATGCAACACCCCATATTCGCCGCAATGAGTGC
ACTTTAGGGATCAGCGTTCCTTACCCAAGACTCAGCAATATCTGCTCCACCAGCCCTGATGCCC
CAATAAACTTTTTTTTTAATGCTTT

hide sequence

RefSeq Acc Id:

XM_017601229 ⟹ XP_017456718

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,716 (-)	NCBI
Rnor_6.0	19	37,428,959 - 37,454,149 (-)	NCBI

Sequence:

show sequence

CCAGGGGAACGGGCTCCGCGCCCGGGAAGGCCCAGCCTGCCTTGGCCTGGCAAGGCTGCACAGC
CAGCGGGTCCGAACTAAGGCGGAAGGACTCTGAGGCCCAACCTCCGTCCAGGATGGAGCTGCGT
TCCGGGACGCGTCTCCTCCGTGTCCGGGGGACTGACTCTGCCCAGACAGTCTGAAGTGCAGCCG
CCCTGGGGAGGGTGGACGGGCAGGGCGGGGCCGAGCCGCTGGCTGACCTTGGCAGGCTGCATCT
GGCGCGGCCGCCACCACGCGCAGCTGGGTGTGGTGGCACATGCCTGTCATCCTGGCCCTGAGGA
GGATCAGGTAGATCAAGACCAGCTATGGCAACATAATATTTTCAAGTCAGCGAACATTCACTGA
GCATCTACTGTATACAAGATGAACATCTGCAACAAACCCTCCAACAAGACAGCCCCTGAGAAGA
ATGTGTGGACAGCGCCCTCACAGGACAGTGGACCTTCCCCAGAACTGCAGGGCCAGCGGTCCCG
ACGGAATGGATGGAGCTGGCCCCCCCACCCACTCCAGATTGTGGCCTGGCTGCTCTACCTCTTC
TTCGCAGTGATTGGCTTTGGGGTCCTTGTTCCCCTCCTGCCTCACCACTGGGTGCCTGCTGGCT
ATGCTTGCATGGGTGCCATCTTTGCTGGCCACCTTGTGGTGCACCTGACTGCTGTCTCCATCGA
TCCAGCAGATGCCAATGTGCGGGACAAGAGCTATTCTGGACCCCTGCCTATCTTCAACCGCAGC
CAGCACGCACATGTCATTGAAGATCTACACTGCAACCTGTGTGACGTGGATGTGAGTGCGCGAT
CCAAACACTGCAGTGCCTGCAATAAATGTGTATGTGGCTTCGATCATCATTGCAAGTGGCTTAA
CAACTGCGTGGGCGAGAGGAACTACCGGCTCTTTCTACACAGTGTGGCATCTGCTTTACTGGGT
GTTCTGCTCCTGGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGTCAACCCCATGCGCC
TTCGCACCAACCAACACTTTGAAGTCTTGAAGAATCACACAGATGTGTGGTTTGTGTTCTTGCC
GGCTGCCCCTGTGGAGACCCAGGCTCCTGCCATCCTGGCCCTGGCTGCCCTACTCATCCTTCTG
GGCCTGCTTTCTACAGCCCTGCTTGGCCACTTGCTCTGCTTCCACATTTATTTAATGTGGCACA
AGCTCACCACCTACGAATACATTGTGCAGCACCGACCAGCTCAGGAAGCAAAGGAGACCCACAA
GGAGCTTGAGTCATGTCCCCGCAAGATGCGGTCCATTCAGGAGATGGAGTTCTACATGAGGACC
TTCAGCCATGTGCGTCCAGAGCCCTCTGGGCAGGCCAGGCCAGCAGCATTAAATGCCAAGAAGG
GAACCTCTAGCAGGAGGGACTCCGGGGCAGCATCTAGAGTTTGCTCTCTGGCTTTTACCTCAGT
CCTTCCCAGTTTCTTGCCACACAAGGCCAAGTGGAACCACCACTGCCCTCCTCCTCAGACACAC
TGGCTCTGCCTCCACGGATCCAACCCCAGGAAAAGAGGAAGCGGCGAGTATATAGATTGCCCAG
GTCTGGGACCATGGACCGAGAGCTCCGGCTGCCCAAGCTACGTGACACTGGGACTCCTAGCCGC
CACGCTAGCCCTTCCTCTGATTCCACCAGTGCCAGCCCAGCACATGCTGGTTGCTCTGTAGACG
CCTACTCCTCGGCATCAGCGGAATCCATGGAAGAGATCCCAGTGGCCCAGACCCGCCTGGGCAG
TGCCGCACTGGGTGCCCCAGGAGCCGGGGGCCGAGAGTCTAGGCTGGCTCTACAGGCACGTTTG
CCTGCTGTTTTTGTGAGCCCAAGCAGTGGCGAGCCCGGAACACCTGAGGCGGTGAAGATGGCTT
GCCTTAGTGGGGACTAGAGGCAGGAGGGCCTTGCAGGGACGTCTGACCACTCTATGCAACACCC
CATATTCGCCGCAATGAGTGCACTTTAGGGATCAGCGTTCCTTACCCAAGACTCAGCAATATCT
GCTCCACCAGCCCTGATGCCCCAATAAACTTTTTTTTTAATGCTTT

hide sequence

RefSeq Acc Id:

XM_039097611 ⟹ XP_038953539

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,716 (-)	NCBI

RefSeq Acc Id:

XM_039097612 ⟹ XP_038953540

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,375,581 (-)	NCBI

RefSeq Acc Id:

XM_039097613 ⟹ XP_038953541

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,361,934 (-)	NCBI

RefSeq Acc Id:

XM_039097614 ⟹ XP_038953542

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,355,738 (-)	NCBI

RefSeq Acc Id:

XM_039097615 ⟹ XP_038953543

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,350,533 - 33,357,026 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001034188	(Get FASTA)	NCBI Sequence Viewer
	XP_008770707	(Get FASTA)	NCBI Sequence Viewer
	XP_017456714	(Get FASTA)	NCBI Sequence Viewer
	XP_017456715	(Get FASTA)	NCBI Sequence Viewer
	XP_017456716	(Get FASTA)	NCBI Sequence Viewer
	XP_017456717	(Get FASTA)	NCBI Sequence Viewer
	XP_017456718	(Get FASTA)	NCBI Sequence Viewer
	XP_038953539	(Get FASTA)	NCBI Sequence Viewer
	XP_038953540	(Get FASTA)	NCBI Sequence Viewer
	XP_038953541	(Get FASTA)	NCBI Sequence Viewer
	XP_038953542	(Get FASTA)	NCBI Sequence Viewer
	XP_038953543	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAX73382	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001034188 ⟸ NM_001039099

- UniProtKB:

Q2TGK5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNICNKPSNKTAPEKNVWTAPSQDSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGF
GVLVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYSGPLPIFNRSQHAHVI
EDLHCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVL
VATYVFVEFFVNPMRLRTNQHFEVLKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTA
LLGHLLCFHIYLMWHKLTTYEYIVQHRPAQEAKETHKELESCPRKMRSIQEMEFYMRTFSHVRP
EPSGQARPAALNANPSQFLATQGQVEPPLPSSSDTLALPPRIQPQEKRKRRVYRLPRSGTMDRE
LRLPKLRDTGTPSRHASPSSDSTSASPAHAGCSVDAYSSASAESMEEIPVAQTRLGSAALGAPG
AGGRESRLALQARLPAVFVSPSSGEPGTPEAVKMACLSGD

hide sequence

RefSeq Acc Id:

XP_008770707 ⟸ XM_008772485

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNICNKPSNKTAPEKNVWTAPSQDSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGF
GVLVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYSGPLPIFNRSQHAHVI
EDLHCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVL
VATYVFVEFFVNPMRLRTNQHFEVLKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTA
LLGHLLCFHIYLMWHKLTTYEYIVQHRPAQEAKETHKELESCPRKMRSIQEMEFYMRTFSHVRP
EPSGQARPAALNANPSQFLATQGQVEPPLPSSSDTLALPPRIQPQWGLETQATLPLSLQEKRKR
RVYRLPRSGTMDRELRLPKLRDTGTPSRHASPSSDSTSASPAHAGCSVDAYSSASAESMEEIPV
AQTRLGSAALGAPGAGGRESRLALQARLPAVFVSPSSGEPGTPEAVKMACLSGD

hide sequence

RefSeq Acc Id:

XP_017456714 ⟸ XM_017601225

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNICNKPSNKTAPEKNVWTAPSQDSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGF
GVLVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYSGPLPIFNRSQHAHVI
EDLHCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVL
VATYVFVEFFVNPMRLRTNQHFEVLKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTA
LLGHLLCFHIYLMWHKLTTYEYIVQHRPAQEAKETHKELESCPRKMRSIQEMEFYMRTFSHVRP
EPSGQARPAALNANPSQFLATQGQVEPPLPSSSDTLALPPRIQPQWGLETQATLPLSLQEKRKR
RVYRLPRSGTMDRELRLPKLRDTGTPSRHASPSSDSTSASPAHAGCSVDAYSSASAESMEEIPV
AQTRLGSAALGAPGAGGRESRLALQARLPAVFVSPSSGEPGTPEAVKMACLSGD

hide sequence

RefSeq Acc Id:

XP_017456717 ⟸ XM_017601228

- Peptide Label:

isoform X3

- Sequence:

show sequence

MNICNKPSNKTAPEKNVWTAPSQDSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGF
GVLVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYSGPLPIFNRSQHAHVI
EDLHCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVL
VATYVFVEFFVNPMRLRTNQHFEVLKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTA
LLGHLLCFHIYLMWHKLTTYEYIVQHRPAQEAKETHKELESCPRKMRSIQEMEFYMRTFSHVRP
EPSGQARPAALNAKKGTSSRRDSGAASRVCSLAFTSVLPSFLPHKAKWNHHCPPPQTHWLCLHG
SNPSGVWRRRPHFLCLYRKRGSGEYIDCPGLGPWTESSGCPSYVTLGLLAATLALPLIPPVPAQ
HMLVAL

hide sequence

RefSeq Acc Id:	XP_017456716 ⟸ XM_017601227
- Peptide Label:	isoform X2
- UniProtKB:	Q2TGK5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNICNKPSNKTAPEKNVWTAPSQDSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGF GVLVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYSGPLPIFNRSQHAHVI EDLHCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVL VATYVFVEFFVNPMRLRTNQHFEVLKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTA LLGHLLCFHIYLMWHKLTTYEYIVQHRPAQEAKETHKELESCPRKMRSIQEMEFYMRTFSHVRP EPSGQARPAALNANPSQFLATQGQVEPPLPSSSDTLALPPRIQPQEKRKRRVYRLPRSGTMDRE LRLPKLRDTGTPSRHASPSSDSTSASPAHAGCSVDAYSSASAESMEEIPVAQTRLGSAALGAPG AGGRESRLALQARLPAVFVSPSSGEPGTPEAVKMACLSGD hide sequence

RefSeq Acc Id:

XP_017456718 ⟸ XM_017601229

- Peptide Label:

isoform X4

- Sequence:

show sequence

MNICNKPSNKTAPEKNVWTAPSQDSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGF
GVLVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYSGPLPIFNRSQHAHVI
EDLHCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVL
VATYVFVEFFVNPMRLRTNQHFEVLKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTA
LLGHLLCFHIYLMWHKLTTYEYIVQHRPAQEAKETHKELESCPRKMRSIQEMEFYMRTFSHVRP
EPSGQARPAALNAKKGTSSRRDSGAASRVCSLAFTSVLPSFLPHKAKWNHHCPPPQTHWLCLHG
SNPRKRGSGEYIDCPGLGPWTESSGCPSYVTLGLLAATLALPLIPPVPAQHMLVAL

hide sequence

RefSeq Acc Id:

XP_017456715 ⟸ XM_017601226

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNICNKPSNKTAPEKNVWTAPSQDSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGF
GVLVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYSGPLPIFNRSQHAHVI
EDLHCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVL
VATYVFVEFFVNPMRLRTNQHFEVLKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTA
LLGHLLCFHIYLMWHKLTTYEYIVQHRPAQEAKETHKELESCPRKMRSIQEMEFYMRTFSHVRP
EPSGQARPAALNANPSQFLATQGQVEPPLPSSSDTLALPPRIQPQWGLETQATLPLSLQEKRKR
RVYRLPRSGTMDRELRLPKLRDTGTPSRHASPSSDSTSASPAHAGCSVDAYSSASAESMEEIPV
AQTRLGSAALGAPGAGGRESRLALQARLPAVFVSPSSGEPGTPEAVKMACLSGD

hide sequence

RefSeq Acc Id:

ENSRNOP00000076042 ⟸ ENSRNOT00000092844

RefSeq Acc Id:

ENSRNOP00000060094 ⟸ ENSRNOT00000066636

RefSeq Acc Id:	XP_038953539 ⟸ XM_039097611
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038953540 ⟸ XM_039097612
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038953541 ⟸ XM_039097613
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038953543 ⟸ XM_039097615
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038953542 ⟸ XM_039097614
- Peptide Label:	isoform X6

Protein Domains

Palmitoyltransferase DHHC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2TGK5-F1-model_v2	AlphaFold	Q2TGK5	1-488	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701078

Promoter ID:

EPDNEW_R11601

Type:

initiation region

Name:

Zdhhc1_1

Description:

zinc finger, DHHC-type containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	37,454,123 - 37,454,183	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589775	AgrOrtholog
BioCyc Gene	G2FUF-5829	BioCyc
Ensembl Genes	ENSRNOG00000017045	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000060094	ENTREZGENE
	ENSRNOP00000060094.2	UniProtKB/TrEMBL
	ENSRNOP00000077222.1	UniProtKB/TrEMBL
	ENSRNOP00000096352.1	UniProtKB/TrEMBL
	ENSRNOP00000097224.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066636	ENTREZGENE
	ENSRNOT00000066636.2	UniProtKB/TrEMBL
	ENSRNOT00000092817.2	UniProtKB/TrEMBL
	ENSRNOT00000092904.2	UniProtKB/TrEMBL
	ENSRNOT00000092984.2	UniProtKB/TrEMBL
InterPro	Znf_DHHC	UniProtKB/TrEMBL
KEGG Report	rno:291967	UniProtKB/TrEMBL
NCBI Gene	291967	ENTREZGENE
PANTHER	PALMITOYLTRANSFERASE ZDHHC1	UniProtKB/TrEMBL
	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	zf-DHHC	UniProtKB/TrEMBL
PhenoGen	Zdhhc1	PhenoGen
PROSITE	DHHC	UniProtKB/TrEMBL
UniProt	A0A8I5ZJF1_RAT	UniProtKB/TrEMBL
	A0A8I6AT65_RAT	UniProtKB/TrEMBL
	A0A8I6GMF5_RAT	UniProtKB/TrEMBL
	F7F2Z1_RAT	UniProtKB/TrEMBL
	Q2TGK5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-12-15	Zdhhc1	zinc finger, DHHC-type containing 1	Zdhhc1	zinc finger, DHHC domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Zdhhc1	zinc finger, DHHC domain containing 1	LOC291967	membrane-associated DHHC1 zinc finger protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC291967	membrane-associated DHHC1 zinc finger protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar