ZDHHC1 (zinc finger DHHC-type containing 1) - Rat Genome Database

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Gene: ZDHHC1 (zinc finger DHHC-type containing 1) Homo sapiens
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Symbol: ZDHHC1
Name: zinc finger DHHC-type containing 1
RGD ID: 1348828
HGNC Page HGNC:17916
Description: Enables palmitoyltransferase activity. Involved in antiviral innate immune response; positive regulation of defense response to virus by host; and protein palmitoylation. Located in Golgi apparatus and endoplasmic reticulum membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C16orf1; DHHC domain-containing cysteine-rich protein 1; DHHC-1; DHHC-domain-containing cysteine-rich protein; HSU90653; palmitoyltransferase ZDHHC1; probable palmitoyltransferase ZDHHC1; zinc finger DHHC domain-containing protein 1; zinc finger protein 377; zinc finger, DHHC domain containing 1; zinc finger, DHHC-type containing 1; ZNF377
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,394,152 - 67,416,477 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,394,152 - 67,416,833 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,428,055 - 67,450,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,985,829 - 66,007,878 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,985,828 - 66,007,878NCBI
Celera1651,936,522 - 51,958,539 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,301,558 - 53,323,519 (-)NCBIHuRef
CHM1_11668,835,705 - 68,857,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10395086   PMID:12477932   PMID:15489334   PMID:16647879   PMID:19056867   PMID:20549515   PMID:21873635   PMID:23034182   PMID:23687301   PMID:25299331   PMID:28514442  
PMID:32296183   PMID:32863941   PMID:33108395   PMID:33961781   PMID:34282274   PMID:36949045   PMID:39069526  


Genomics

Comparative Map Data
ZDHHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,394,152 - 67,416,477 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,394,152 - 67,416,833 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,428,055 - 67,450,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,985,829 - 66,007,878 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,985,828 - 66,007,878NCBI
Celera1651,936,522 - 51,958,539 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,301,558 - 53,323,519 (-)NCBIHuRef
CHM1_11668,835,705 - 68,857,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBIT2T-CHM13v2.0
Zdhhc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,199,055 - 106,223,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,199,055 - 106,223,534 (-)EnsemblGRCm39 Ensembl
GRCm388105,472,419 - 105,497,062 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,472,423 - 105,496,902 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,996,325 - 108,020,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,361,554 - 108,385,999 (-)NCBIMGSCv36mm8
Celera8109,695,617 - 109,720,060 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Zdhhc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,260,445 - 50,285,634 (-)NCBIGRCr8
mRatBN7.21933,350,533 - 33,375,717 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,350,533 - 33,375,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,166,123 - 40,191,049 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,819,451 - 40,844,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,110,095 - 43,142,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,428,959 - 37,454,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,428,959 - 37,454,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,294,576 - 48,319,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,288,675 - 35,314,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1932,778,838 - 32,803,771 (-)NCBICelera
Cytogenetic Map19q12NCBI
Zdhhc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,234,319 - 9,245,894 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,224,559 - 9,245,894 (+)NCBIChiLan1.0ChiLan1.0
ZDHHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,924,075 - 76,946,138 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,836,755 - 82,858,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,739,857 - 47,761,887 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,129,090 - 67,150,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,129,091 - 67,142,001 (-)Ensemblpanpan1.1panPan2
ZDHHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,985,974 - 82,006,877 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,985,998 - 82,006,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,975,651 - 81,996,458 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,421,311 - 82,442,105 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,421,230 - 82,442,095 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,247,436 - 82,268,237 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,928,559 - 81,949,345 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,571,977 - 82,592,795 (+)NCBIUU_Cfam_GSD_1.0
Zdhhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,719,938 - 41,739,343 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,849,802 - 17,861,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,849,772 - 17,869,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,049,949 - 28,071,540 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,046,099 - 28,071,535 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,317,029 - 25,338,632 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,040,264 - 60,062,531 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,040,266 - 60,062,548 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,789,567 - 22,811,886 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,901,589 - 18,922,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,901,622 - 18,921,798 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZDHHC1
42 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16q13-22.2(chr16:56883592-71279975)x3 copy number gain See cases [RCV000052405] Chr16:56883592..71279975 [GRCh38]
Chr16:56917504..71313878 [GRCh37]
Chr16:55475005..69871379 [NCBI36]
Chr16:16q13-22.2		 pathogenic
GRCh38/hg38 16q21-23.1(chr16:58456122-74708723)x3 copy number gain See cases [RCV000052408] Chr16:58456122..74708723 [GRCh38]
Chr16:58490026..74742621 [GRCh37]
Chr16:57047527..73300122 [NCBI36]
Chr16:16q21-23.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 copy number gain See cases [RCV000052421] Chr16:65313395..90081985 [GRCh38]
Chr16:65347298..90148393 [GRCh37]
Chr16:63904799..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:62179331-67770414)x1 copy number loss See cases [RCV000053333] Chr16:62179331..67770414 [GRCh38]
Chr16:62213235..67804317 [GRCh37]
Chr16:60770736..66361818 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:63318997-70555249)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|See cases [RCV000053334] Chr16:63318997..70555249 [GRCh38]
Chr16:63352901..70589152 [GRCh37]
Chr16:61910402..69146653 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:64311275-68062011)x1 copy number loss See cases [RCV000053335] Chr16:64311275..68062011 [GRCh38]
Chr16:64345179..68095914 [GRCh37]
Chr16:62902680..66653415 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q22.1(chr16:66694180-67865445)x1 copy number loss See cases [RCV000053336] Chr16:66694180..67865445 [GRCh38]
Chr16:66728083..67899348 [GRCh37]
Chr16:65285584..66456849 [NCBI36]
Chr16:16q22.1		 pathogenic
NM_015964.3(TPPP3):c.312A>G (p.Ala104=) single nucleotide variant Malignant melanoma [RCV000071182] Chr16:67390509 [GRCh38]
Chr16:67424412 [GRCh37]
Chr16:65981913 [NCBI36]
Chr16:16q22.1		 not provided
GRCh38/hg38 16q21-22.1(chr16:66245888-67473023)x1 copy number loss See cases [RCV000134709] Chr16:66245888..67473023 [GRCh38]
Chr16:66279791..67506926 [GRCh37]
Chr16:64837292..66064427 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q21-24.1(chr16:62925929-84585795)x3 copy number gain See cases [RCV000135863] Chr16:62925929..84585795 [GRCh38]
Chr16:62959833..84619401 [GRCh37]
Chr16:61517334..83176902 [NCBI36]
Chr16:16q21-24.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65511483-90096995)x3 copy number gain See cases [RCV000139426] Chr16:65511483..90096995 [GRCh38]
Chr16:65545386..90163403 [GRCh37]
Chr16:64102887..88690904 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:64389378-90081985)x3 copy number gain See cases [RCV000142578] Chr16:64389378..90081985 [GRCh38]
Chr16:64423281..90148393 [GRCh37]
Chr16:62980782..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic|likely pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3		 pathogenic
GRCh38/hg38 16q12.1-22.1(chr16:49685521-68401712)x3 copy number gain See cases [RCV000143752] Chr16:49685521..68401712 [GRCh38]
Chr16:49719432..68435615 [GRCh37]
Chr16:48276933..66993116 [NCBI36]
Chr16:16q12.1-22.1		 pathogenic
GRCh38/hg38 16q21-23.3(chr16:65957829-83611443)x3 copy number gain See cases [RCV000143742] Chr16:65957829..83611443 [GRCh38]
Chr16:65991732..83645048 [GRCh37]
Chr16:64549233..82202549 [NCBI36]
Chr16:16q21-23.3		 pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46615804-90142285)x1 copy number loss Breast ductal adenocarcinoma [RCV000207138] Chr16:46615804..90142285 [GRCh37]
Chr16:16q11.2-24.3		 uncertain significance
GRCh37/hg19 16q12.2-22.2(chr16:55359026-70884455)x1 copy number loss Breast ductal adenocarcinoma [RCV000207067] Chr16:55359026..70884455 [GRCh37]
Chr16:16q12.2-22.2		 likely pathogenic|uncertain significance
Single allele complex Breast ductal adenocarcinoma [RCV000207314] Chr16:56368689..90141355 [GRCh37]
Chr16:16q12.2-24.3		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46464488-90155062)x3 copy number gain See cases [RCV000446110] Chr16:46464488..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46497599-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626429] Chr16:46497599..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q22.1(chr16:67132790-68166320) copy number loss not provided [RCV000767617] Chr16:67132790..68166320 [GRCh37]
Chr16:16q22.1		 pathogenic
NM_001323627.2(ZDHHC1):c.1169C>G (p.Pro390Arg) single nucleotide variant not specified [RCV004325729] Chr16:67394890 [GRCh38]
Chr16:67428793 [GRCh37]
Chr16:16q22.1		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46455960-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626435] Chr16:46455960..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
NM_001323627.2(ZDHHC1):c.70C>T (p.Pro24Ser) single nucleotide variant not specified [RCV004291907] Chr16:67406382 [GRCh38]
Chr16:67440285 [GRCh37]
Chr16:16q22.1		 uncertain significance
GRCh37/hg19 16q13-24.3(chr16:57051473-89797669)x3 copy number gain See cases [RCV000512511] Chr16:57051473..89797669 [GRCh37]
Chr16:16q13-24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q12.2-22.2(chr16:54416050-72453266)x3 copy number gain not provided [RCV000683820] Chr16:54416050..72453266 [GRCh37]
Chr16:16q12.2-22.2		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
NM_001323627.2(ZDHHC1):c.150G>A (p.Pro50=) single nucleotide variant not provided [RCV000973542] Chr16:67406302 [GRCh38]
Chr16:67440205 [GRCh37]
Chr16:16q22.1		 benign
GRCh37/hg19 16q21-22.1(chr16:65669673-70180183)x1 copy number loss not provided [RCV001006797] Chr16:65669673..70180183 [GRCh37]
Chr16:16q21-22.1		 pathogenic
NM_001323627.2(ZDHHC1):c.625A>T (p.Met209Leu) single nucleotide variant not specified [RCV004328362] Chr16:67398850 [GRCh38]
Chr16:67432753 [GRCh37]
Chr16:16q22.1		 uncertain significance
GRCh37/hg19 16q21-24.3(chr16:61524229-90155062)x3 copy number gain not provided [RCV001249359] Chr16:61524229..90155062 [GRCh37]
Chr16:16q21-24.3		 not provided
NM_001323627.2(ZDHHC1):c.355C>A (p.Leu119Met) single nucleotide variant not specified [RCV004686231] Chr16:67401030 [GRCh38]
Chr16:67434933 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.151C>A (p.Leu51Ile) single nucleotide variant not specified [RCV004686235] Chr16:67406301 [GRCh38]
Chr16:67440204 [GRCh37]
Chr16:16q22.1		 uncertain significance
NC_000016.9:g.(?_66545871)_(72146396_?)dup duplication Dyskeratosis congenita, autosomal dominant 6 [RCV001900384]|Immunodeficiency [RCV001900385]|not provided [RCV001900386] Chr16:66545871..72146396 [GRCh37]
Chr16:16q21-22.2		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46503968-90155062)x3 copy number gain not provided [RCV002221458] Chr16:46503968..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
NC_000016.9:g.(?_65821800)_(72146396_?)del deletion Dyskeratosis congenita, autosomal dominant 6 [RCV003122496] Chr16:65821800..72146396 [GRCh37]
Chr16:16q21-22.2		 uncertain significance
NM_001323627.2(ZDHHC1):c.863C>A (p.Pro288Gln) single nucleotide variant not specified [RCV004308727] Chr16:67398276 [GRCh38]
Chr16:67432179 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.857G>A (p.Arg286His) single nucleotide variant not specified [RCV004298792] Chr16:67398282 [GRCh38]
Chr16:67432185 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1346G>A (p.Arg449Gln) single nucleotide variant not specified [RCV004295048] Chr16:67394713 [GRCh38]
Chr16:67428616 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1166G>A (p.Gly389Glu) single nucleotide variant not specified [RCV004149323] Chr16:67394893 [GRCh38]
Chr16:67428796 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.313C>G (p.Pro105Ala) single nucleotide variant not specified [RCV004110507] Chr16:67401072 [GRCh38]
Chr16:67434975 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1196C>T (p.Ser399Leu) single nucleotide variant not specified [RCV004081259] Chr16:67394863 [GRCh38]
Chr16:67428766 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1105-13C>T single nucleotide variant not specified [RCV004104282] Chr16:67395075 [GRCh38]
Chr16:67428978 [GRCh37]
Chr16:16q22.1		 likely benign
NM_001323627.2(ZDHHC1):c.1355C>T (p.Thr452Met) single nucleotide variant not specified [RCV004217867] Chr16:67394704 [GRCh38]
Chr16:67428607 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1104+33G>A single nucleotide variant not specified [RCV004242873] Chr16:67395154 [GRCh38]
Chr16:67429057 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.635G>A (p.Arg212His) single nucleotide variant not specified [RCV004084509] Chr16:67398840 [GRCh38]
Chr16:67432743 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.700G>A (p.Ala234Thr) single nucleotide variant not specified [RCV004140290] Chr16:67398687 [GRCh38]
Chr16:67432590 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.328G>A (p.Val110Met) single nucleotide variant not specified [RCV004160169] Chr16:67401057 [GRCh38]
Chr16:67434960 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.71C>T (p.Pro24Leu) single nucleotide variant not specified [RCV004245457] Chr16:67406381 [GRCh38]
Chr16:67440284 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.310G>A (p.Asp104Asn) single nucleotide variant not specified [RCV004227752] Chr16:67401075 [GRCh38]
Chr16:67434978 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1105-49T>C single nucleotide variant not specified [RCV004224830] Chr16:67395111 [GRCh38]
Chr16:67429014 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1148C>T (p.Thr383Ile) single nucleotide variant not specified [RCV004146548] Chr16:67395019 [GRCh38]
Chr16:67428922 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.743C>T (p.Ala248Val) single nucleotide variant not specified [RCV004100535] Chr16:67398644 [GRCh38]
Chr16:67432547 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.589G>C (p.Ala197Pro) single nucleotide variant not specified [RCV004125695] Chr16:67398886 [GRCh38]
Chr16:67432789 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.56G>A (p.Ser19Asn) single nucleotide variant not specified [RCV004157266] Chr16:67406396 [GRCh38]
Chr16:67440299 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.368A>T (p.Asn123Ile) single nucleotide variant not specified [RCV004223323] Chr16:67401017 [GRCh38]
Chr16:67434920 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1104+52A>C single nucleotide variant not specified [RCV004277190] Chr16:67395135 [GRCh38]
Chr16:67429038 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.917G>A (p.Arg306Gln) single nucleotide variant not specified [RCV004262223] Chr16:67398222 [GRCh38]
Chr16:67432125 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1347A>T (p.Arg449=) single nucleotide variant not specified [RCV004361117] Chr16:67394712 [GRCh38]
Chr16:67428615 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.775G>A (p.Ala259Thr) single nucleotide variant not specified [RCV004362218] Chr16:67398612 [GRCh38]
Chr16:67432515 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1007C>T (p.Ala336Val) single nucleotide variant not specified [RCV004483545] Chr16:67395487 [GRCh38]
Chr16:67429390 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.298G>A (p.Ala100Thr) single nucleotide variant not specified [RCV004483552] Chr16:67401087 [GRCh38]
Chr16:67434990 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1104+3A>T single nucleotide variant not specified [RCV004483546] Chr16:67395184 [GRCh38]
Chr16:67429087 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1149C>T (p.Thr383=) single nucleotide variant not specified [RCV004483547] Chr16:67395018 [GRCh38]
Chr16:67428921 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1157C>T (p.Pro386Leu) single nucleotide variant not specified [RCV004483548] Chr16:67395010 [GRCh38]
Chr16:67428913 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1326C>T (p.Ala442=) single nucleotide variant not specified [RCV004483549] Chr16:67394733 [GRCh38]
Chr16:67428636 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1337G>C (p.Gly446Ala) single nucleotide variant not specified [RCV004483550] Chr16:67394722 [GRCh38]
Chr16:67428625 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.248A>G (p.Tyr83Cys) single nucleotide variant not specified [RCV004483551] Chr16:67406204 [GRCh38]
Chr16:67440107 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.603C>T (p.Phe201=) single nucleotide variant not specified [RCV004483553] Chr16:67398872 [GRCh38]
Chr16:67432775 [GRCh37]
Chr16:16q22.1		 likely benign
NM_001323627.2(ZDHHC1):c.641A>G (p.Asn214Ser) single nucleotide variant not specified [RCV004483554] Chr16:67398834 [GRCh38]
Chr16:67432737 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.706G>A (p.Val236Met) single nucleotide variant not specified [RCV004483555] Chr16:67398681 [GRCh38]
Chr16:67432584 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.71C>A (p.Pro24Gln) single nucleotide variant not specified [RCV004483556] Chr16:67406381 [GRCh38]
Chr16:67440284 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.870G>T (p.Glu290Asp) single nucleotide variant not specified [RCV004483557] Chr16:67398269 [GRCh38]
Chr16:67432172 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.1364G>T (p.Arg455Leu) single nucleotide variant not specified [RCV004686230] Chr16:67394695 [GRCh38]
Chr16:67428598 [GRCh37]
Chr16:16q22.1		 likely benign
NM_001323627.2(ZDHHC1):c.89C>T (p.Pro30Leu) single nucleotide variant not specified [RCV004686232] Chr16:67406363 [GRCh38]
Chr16:67440266 [GRCh37]
Chr16:16q22.1		 uncertain significance
NC_000016.9:g.(?_48799549)_(70756330_?)dup duplication Chromosome 16q12 duplication syndrome [RCV004595820] Chr16:48799549..70756330 [GRCh37]
Chr16:16q12.1-22.1		 likely pathogenic
NM_001323627.2(ZDHHC1):c.875A>C (p.Lys292Thr) single nucleotide variant not specified [RCV004686233] Chr16:67398264 [GRCh38]
Chr16:67432167 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_001323627.2(ZDHHC1):c.988G>C (p.Gly330Arg) single nucleotide variant not specified [RCV004686236] Chr16:67395506 [GRCh38]
Chr16:67429409 [GRCh37]
Chr16:16q22.1		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1955
Count of miRNA genes:787
Interacting mature miRNAs:936
Transcripts:ENST00000348579, ENST00000562122, ENST00000565726, ENST00000566075, ENST00000567311, ENST00000568650
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407000626GWAS649602_Hbody mass index QTL GWAS649602 (human)3e-11body mass indexbody mass index (BMI) (CMO:0000105)166741573667415737Human
407228345GWAS877321_Hbone density QTL GWAS877321 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)166739939067399391Human
406996143GWAS645119_Hcomparative body size at age 10, self-reported QTL GWAS645119 (human)3e-16comparative body size at age 10, self-reported166741573667415737Human
406925439GWAS574415_Hvolumetric bone mineral density QTL GWAS574415 (human)0.0000009volumetric bone mineral densityvolumetric bone mineral density (CMO:0001553)166740638667406387Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2436 2788 2243 4972 1722 2347 6 624 1852 465 2269 7216 6383 52 3733 1 852 1744 1613 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001323627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006721185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC009061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM724650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX111231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA432496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY054038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U90653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000348579   ⟹   ENSP00000340299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,394,419 - 67,416,474 (-)Ensembl
Ensembl Acc Id: ENST00000562122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,395,505 - 67,404,553 (-)Ensembl
Ensembl Acc Id: ENST00000565726   ⟹   ENSP00000459264
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,394,152 - 67,416,477 (-)Ensembl
Ensembl Acc Id: ENST00000566075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,394,425 - 67,396,257 (-)Ensembl
Ensembl Acc Id: ENST00000567311
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,395,566 - 67,396,287 (-)Ensembl
Ensembl Acc Id: ENST00000568650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,404,158 - 67,416,833 (-)Ensembl
RefSeq Acc Id: NM_001323627   ⟹   NP_001310556
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
CHM1_11668,835,705 - 68,857,780 (-)NCBI
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013304   ⟹   NP_037436
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
GRCh371667,428,322 - 67,450,339 (-)RGD
Build 361665,985,829 - 66,007,878 (-)NCBI Archive
Celera1651,936,522 - 51,958,539 (-)RGD
HuRef1653,301,558 - 53,323,519 (-)RGD
CHM1_11668,835,705 - 68,857,722 (-)NCBI
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006721185   ⟹   XP_006721248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011523060   ⟹   XP_011521362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,406,367 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024450245   ⟹   XP_024306013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024450246   ⟹   XP_024306014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024450247   ⟹   XP_024306015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054380184   ⟹   XP_054236159
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380185   ⟹   XP_054236160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380186   ⟹   XP_054236161
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380187   ⟹   XP_054236162
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380188   ⟹   XP_054236163
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,201,055 (-)NCBI
RefSeq Acc Id: NP_037436   ⟸   NM_013304
- Peptide Label: isoform 1
- UniProtKB: O15461 (UniProtKB/Swiss-Prot),   Q8WTX9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006721248   ⟸   XM_006721185
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011521362   ⟸   XM_011523060
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001310556   ⟸   NM_001323627
- Peptide Label: isoform 2
- UniProtKB: I3L202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024306015   ⟸   XM_024450247
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_024306014   ⟸   XM_024450246
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024306013   ⟸   XM_024450245
- Peptide Label: isoform X1
- UniProtKB: Q8WTX9 (UniProtKB/Swiss-Prot),   O15461 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000340299   ⟸   ENST00000348579
Ensembl Acc Id: ENSP00000459264   ⟸   ENST00000565726
RefSeq Acc Id: XP_054236162   ⟸   XM_054380187
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054236161   ⟸   XM_054380186
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054236160   ⟸   XM_054380185
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054236159   ⟸   XM_054380184
- Peptide Label: isoform X1
- UniProtKB: Q8WTX9 (UniProtKB/Swiss-Prot),   O15461 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054236163   ⟸   XM_054380188
- Peptide Label: isoform X5
Protein Domains
DHHC   Palmitoyltransferase DHHC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WTX9-F1-model_v2 AlphaFold Q8WTX9 1-485 view protein structure

Promoters
RGD ID:6793617
Promoter ID:HG_KWN:24035
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:OTTHUMT00000268845,   UC002ETC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,007,536 - 66,008,036 (-)MPROMDB
RGD ID:7232545
Promoter ID:EPDNEW_H22018
Type:initiation region
Name:ZDHHC1_1
Description:zinc finger DHHC-type containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,416,477 - 67,416,537EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17916 AgrOrtholog
COSMIC ZDHHC1 COSMIC
Ensembl Genes ENSG00000159714 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000348579 ENTREZGENE
  ENST00000348579.6 UniProtKB/Swiss-Prot
  ENST00000565726 ENTREZGENE
  ENST00000565726.3 UniProtKB/TrEMBL
GTEx ENSG00000159714 GTEx
HGNC ID HGNC:17916 ENTREZGENE
Human Proteome Map ZDHHC1 Human Proteome Map
InterPro Palmitoyltrfase_DHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:29800 UniProtKB/Swiss-Prot
NCBI Gene 29800 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38261 PharmGKB
PROSITE DHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt I3L202 ENTREZGENE, UniProtKB/TrEMBL
  O15461 ENTREZGENE
  Q8WTX9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O15461 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 ZDHHC1  zinc finger DHHC-type containing 1    zinc finger, DHHC-type containing 1  Symbol and/or name change 5135510 APPROVED