ZDHHC1 (zinc finger DHHC-type containing 1) - Rat Genome Database

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Gene: ZDHHC1 (zinc finger DHHC-type containing 1) Homo sapiens
Analyze
Symbol: ZDHHC1
Name: zinc finger DHHC-type containing 1
RGD ID: 1348828
HGNC Page HGNC:17916
Description: Enables protein-cysteine S-palmitoyltransferase activity. Involved in antiviral innate immune response; protein palmitoylation; and regulation of defense response. Located in Golgi apparatus and endoplasmic reticulum membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C16orf1; DHHC domain-containing cysteine-rich protein 1; DHHC-1; DHHC-domain-containing cysteine-rich protein; HSU90653; palmitoyltransferase ZDHHC1; probable palmitoyltransferase ZDHHC1; zinc finger DHHC domain-containing protein 1; zinc finger protein 377; zinc finger, DHHC domain containing 1; zinc finger, DHHC-type containing 1; ZNF377
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,394,152 - 67,416,477 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,394,152 - 67,416,833 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,428,055 - 67,450,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,985,829 - 66,007,878 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,985,828 - 66,007,878NCBI
Celera1651,936,522 - 51,958,539 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,301,558 - 53,323,519 (-)NCBIHuRef
CHM1_11668,835,705 - 68,857,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZDHHC1Humanautosomal dominant dyskeratosis congenita 6  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal dominant 6ClinVarPMID:28492532
ZDHHC1HumanChromosome 16q12 Duplication Syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 16q12 duplication syndromeClinVarPMID:25741868

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZDHHC1Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of ZDHHC1 mRNACTDPMID:31614463
ZDHHC1Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOZdhhc1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ZDHHC1 mRNACTDPMID:21570461
ZDHHC1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOZdhhc1 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of ZDHHC1 mRNACTDPMID:33387578
ZDHHC1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOZdhhc1 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of ZDHHC1 mRNACTDPMID:22808131 and PMID:34747641
ZDHHC1Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of ZDHHC1 mRNACTDPMID:28628672
ZDHHC1Human4,4'-diaminodiphenylmethane increases expressionISOZdhhc1 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of ZDHHC1 mRNACTDPMID:18648102
ZDHHC1Human4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of ZDHHC1 mRNACTDPMID:28628672
ZDHHC1Human6-propyl-2-thiouracil decreases expressionISOZdhhc1 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of ZDHHC1 mRNACTDPMID:30047161
ZDHHC1Humanamitrole decreases expressionISOZdhhc1 (Rattus norvegicus)6480464Amitrole results in decreased expression of ZDHHC1 mRNACTDPMID:30047161
ZDHHC1Humanamphetamine increases expressionISOZdhhc1 (Rattus norvegicus)6480464Amphetamine results in increased expression of ZDHHC1 mRNACTDPMID:30779732
ZDHHC1Humanaristolochic acid A increases expressionEXP 6480464aristolochic acid I results in increased expression of ZDHHC1 mRNACTDPMID:33212167
ZDHHC1Humanbenzo[a]pyrene decreases methylationEXP 6480464Benzo(a)pyrene results in decreased methylation of ZDHHC1 5' UTRCTDPMID:27901495
ZDHHC1Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of ZDHHC1 promoterCTDPMID:27901495
ZDHHC1Humanbeta-lapachone decreases expressionEXP 6480464beta-lapachone results in decreased expression of ZDHHC1 mRNACTDPMID:38218311
ZDHHC1Humanbisphenol A increases expressionISOZdhhc1 (Mus musculus)6480464bisphenol A results in increased expression of ZDHHC1 mRNACTDPMID:26063408
ZDHHC1Humanbisphenol A decreases methylationEXP 6480464bisphenol A results in decreased methylation of ZDHHC1 geneCTDPMID:31601247
ZDHHC1Humanbisphenol A multiple interactionsEXP 6480464[bisphenol A co-treated with Fulvestrant] results in decreased methylation of ZDHHC1 geneCTDPMID:31601247
ZDHHC1Humanbisphenol A increases expressionISOZdhhc1 (Rattus norvegicus)6480464bisphenol A results in increased expression of ZDHHC1 mRNACTDPMID:25181051 and PMID:34947998
ZDHHC1Humanbisphenol F decreases expressionISOZdhhc1 (Mus musculus)6480464bisphenol F results in decreased expression of ZDHHC1 mRNACTDPMID:38685157
ZDHHC1Humancadmium dichloride decreases expressionEXP 6480464Cadmium Chloride results in decreased expression of ZDHHC1 mRNACTDPMID:38568856

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Biological Process
1 to 13 of 13 rows

  
Object Symbol
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Reference
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Source
Original Reference(s)
ZDHHC1Humanantiviral innate immune response involved_inIMP 150520179 PMID:25299331UniProtPMID:25299331
ZDHHC1Humanantiviral innate immune response involved_inIBAMGI:1918046 more ...150520179 GO_CentralGO_REF:0000033
ZDHHC1Humanantiviral innate immune response involved_inIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanpeptidyl-L-cysteine S-palmitoylation involved_inISOZdhhc1 (Mus musculus)9068941 PMID:23687301UniProtPMID:23687301
ZDHHC1Humanpositive regulation of defense response to virus by host involved_inIMP 150520179 PMID:25299331UniProtPMID:25299331
ZDHHC1Humanpositive regulation of defense response to virus by host involved_inIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanpositive regulation of NLRP3 inflammasome complex assembly involved_inIDA 150520179 PMID:39173637UniProtPMID:39173637
ZDHHC1Humanpositive regulation of NLRP3 inflammasome complex assembly involved_inIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanpositive regulation of protein localization to endosome involved_inIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanpositive regulation of protein oligomerization involved_inIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanprotein palmitoylation involved_inIDA 150520179 PMID:23034182UniProtPMID:23034182
ZDHHC1Humanprotein palmitoylation acts_upstream_of_or_withinISOZdhhc1 (Mus musculus)9068941 PMID:15603741MGIPMID:15603741
ZDHHC1Humanprotein targeting to membrane involved_inIBAPANTHER:PTN000525256 more ...150520179 GO_CentralGO_REF:0000033
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Cellular Component
1 to 15 of 15 rows

  
Object Symbol
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Reference
Notes
Source
Original Reference(s)
ZDHHC1Humanendoplasmic reticulum is_active_inIBAFB:FBgn0027453 more ...150520179 GO_CentralGO_REF:0000033
ZDHHC1Humanendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
ZDHHC1Humanendoplasmic reticulum located_inIDA 150520179 PMID:16647879UniProtPMID:16647879
ZDHHC1Humanendoplasmic reticulum membrane located_inIDA 150520179 PMID:25299331UniProtPMID:25299331
ZDHHC1Humanendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
ZDHHC1Humanendosome located_inIEAUniProtKB-KW:KW-0967150520179 UniProtGO_REF:0000043
ZDHHC1Humanendosome membrane located_inIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanendosome membrane located_inIEAUniProtKB-SubCell:SL-0100150520179 UniProtGO_REF:0000044
ZDHHC1Humanextracellular exosome located_inHDA 150520179 PMID:19056867UniProtPMID:19056867
ZDHHC1HumanGolgi apparatus located_inIEAUniProtKB-SubCell:SL-0132150520179 UniProtGO_REF:0000044
ZDHHC1HumanGolgi apparatus is_active_inIBAFB:FBgn0031495 more ...150520179 GO_CentralGO_REF:0000033
ZDHHC1HumanGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
ZDHHC1HumanGolgi apparatus located_inIDA 150520179 PMID:25299331UniProtPMID:25299331
ZDHHC1Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
ZDHHC1Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
1 to 15 of 15 rows

Molecular Function
1 to 14 of 14 rows

  
Object Symbol
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Notes
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Original Reference(s)
ZDHHC1Humanacyltransferase activity enablesIEAUniProtKB-KW:KW-0012150520179 UniProtGO_REF:0000043
ZDHHC1Humanacyltransferase activity enablesIEAUniRule:UR000079119150520179 UniProtGO_REF:0000104
ZDHHC1HumanDNA binding enablesNAS 150520179 PMID:10395086UniProtPMID:10395086
ZDHHC1Humanpalmitoyltransferase activity enablesIEAInterPro:IPR001594 and InterPro:IPR039859150520179 InterProGO_REF:0000002
ZDHHC1Humanpalmitoyltransferase activity enablesIDA 150520179 PMID:23034182UniProtPMID:23034182
ZDHHC1Humanpalmitoyltransferase activity enablesIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanprotein binding enablesIPIUniProtKB:Q86WV6150520179 PMID:25299331UniProtPMID:25299331
ZDHHC1Humanprotein binding enablesIPIUniProtKB:A8MQ03 more ...150520179 PMID:32296183IntActPMID:32296183
ZDHHC1Humanprotein-cysteine S-palmitoyltransferase activity enablesIEARHEA:36683150520179 RHEAGO_REF:0000116
ZDHHC1Humanprotein-cysteine S-palmitoyltransferase activity enablesIBAMGI:1913470 more ...150520179 GO_CentralGO_REF:0000033
ZDHHC1Humanprotein-cysteine S-palmitoyltransferase activity enablesIEAEC:2.3.1.225150520179 UniProtGO_REF:0000003
ZDHHC1Humanprotein-cysteine S-palmitoyltransferase activity enablesIEAUniProtKB:Q8R0N9 and ensembl:ENSMUSP00000148381150520179 EnsemblGO_REF:0000107
ZDHHC1Humanprotein-cysteine S-palmitoyltransferase activity enablesIDA 150520179 PMID:39173637UniProtPMID:39173637
ZDHHC1Humantransferase activity enablesIEAUniProtKB-KW:KW-0808150520179 UniProtGO_REF:0000043
1 to 14 of 14 rows

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZDHHC1HumanImmunodeficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: ImmunodeficiencyClinVar 

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Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10395086   PMID:12477932   PMID:15489334   PMID:16647879   PMID:19056867   PMID:20549515   PMID:21873635   PMID:23034182   PMID:23687301   PMID:25299331   PMID:28514442  
PMID:32296183   PMID:32863941   PMID:33961781   PMID:34282274   PMID:36949045   PMID:39069526   PMID:39173637  



ZDHHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,394,152 - 67,416,477 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,394,152 - 67,416,833 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,428,055 - 67,450,380 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,985,829 - 66,007,878 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,985,828 - 66,007,878NCBI
Celera1651,936,522 - 51,958,539 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,301,558 - 53,323,519 (-)NCBIHuRef
CHM1_11668,835,705 - 68,857,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBIT2T-CHM13v2.0
Zdhhc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,199,055 - 106,223,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,199,055 - 106,223,534 (-)EnsemblGRCm39 Ensembl
GRCm388105,472,419 - 105,497,062 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,472,423 - 105,496,902 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,996,325 - 108,020,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,361,554 - 108,385,999 (-)NCBIMGSCv36mm8
Celera8109,695,617 - 109,720,060 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Zdhhc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,260,445 - 50,285,634 (-)NCBIGRCr8
mRatBN7.21933,350,533 - 33,375,717 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,350,533 - 33,375,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,166,123 - 40,191,049 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,819,451 - 40,844,381 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,110,095 - 43,142,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,428,959 - 37,454,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,428,959 - 37,454,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,294,576 - 48,319,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,288,675 - 35,314,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1932,778,838 - 32,803,771 (-)NCBICelera
Cytogenetic Map19q12NCBI
Zdhhc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,234,319 - 9,245,894 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,224,559 - 9,245,894 (+)NCBIChiLan1.0ChiLan1.0
ZDHHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,924,075 - 76,946,138 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,836,755 - 82,858,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,739,857 - 47,761,887 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,129,090 - 67,150,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,129,091 - 67,142,001 (-)Ensemblpanpan1.1panPan2
ZDHHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,985,974 - 82,006,877 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,985,998 - 82,006,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,975,651 - 81,996,458 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,421,311 - 82,442,105 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,421,230 - 82,442,095 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,247,436 - 82,268,237 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,928,559 - 81,949,345 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,571,977 - 82,592,795 (+)NCBIUU_Cfam_GSD_1.0
Zdhhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,719,938 - 41,739,343 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,849,802 - 17,861,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,849,772 - 17,869,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,049,949 - 28,071,540 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,046,099 - 28,071,535 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,317,029 - 25,338,632 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,040,264 - 60,062,531 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,040,266 - 60,062,548 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,789,567 - 22,811,886 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,901,589 - 18,922,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,901,622 - 18,921,798 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in ZDHHC1
51 total Variants

1 to 10 of 88 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 16q13-22.2(chr16:56883592-71279975)x3 copy number gain See cases [RCV000052405] Chr16:56883592..71279975 [GRCh38]
Chr16:56917504..71313878 [GRCh37]
Chr16:55475005..69871379 [NCBI36]
Chr16:16q13-22.2
pathogenic
GRCh38/hg38 16q21-23.1(chr16:58456122-74708723)x3 copy number gain See cases [RCV000052408] Chr16:58456122..74708723 [GRCh38]
Chr16:58490026..74742621 [GRCh37]
Chr16:57047527..73300122 [NCBI36]
Chr16:16q21-23.1
pathogenic
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 copy number gain See cases [RCV000052421] Chr16:65313395..90081985 [GRCh38]
Chr16:65347298..90148393 [GRCh37]
Chr16:63904799..88675894 [NCBI36]
Chr16:16q21-24.3
pathogenic
GRCh38/hg38 16q21-22.1(chr16:62179331-67770414)x1 copy number loss See cases [RCV000053333] Chr16:62179331..67770414 [GRCh38]
Chr16:62213235..67804317 [GRCh37]
Chr16:60770736..66361818 [NCBI36]
Chr16:16q21-22.1
pathogenic
GRCh38/hg38 16q21-22.1(chr16:63318997-70555249)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|See cases [RCV000053334] Chr16:63318997..70555249 [GRCh38]
Chr16:63352901..70589152 [GRCh37]
Chr16:61910402..69146653 [NCBI36]
Chr16:16q21-22.1
pathogenic
GRCh38/hg38 16q21-22.1(chr16:64311275-68062011)x1 copy number loss See cases [RCV000053335] Chr16:64311275..68062011 [GRCh38]
Chr16:64345179..68095914 [GRCh37]
Chr16:62902680..66653415 [NCBI36]
Chr16:16q21-22.1
pathogenic
GRCh38/hg38 16q22.1(chr16:66694180-67865445)x1 copy number loss See cases [RCV000053336] Chr16:66694180..67865445 [GRCh38]
Chr16:66728083..67899348 [GRCh37]
Chr16:65285584..66456849 [NCBI36]
Chr16:16q22.1
pathogenic
GRCh38/hg38 16q21-24.1(chr16:62925929-84585795)x3 copy number gain See cases [RCV000135863] Chr16:62925929..84585795 [GRCh38]
Chr16:62959833..84619401 [GRCh37]
Chr16:61517334..83176902 [NCBI36]
Chr16:16q21-24.1
pathogenic
NM_015964.3(TPPP3):c.312A>G (p.Ala104=) single nucleotide variant Malignant melanoma [RCV000071182] Chr16:67390509 [GRCh38]
Chr16:67424412 [GRCh37]
Chr16:65981913 [NCBI36]
Chr16:16q22.1
not provided
GRCh38/hg38 16q21-22.1(chr16:66245888-67473023)x1 copy number loss See cases [RCV000134709] Chr16:66245888..67473023 [GRCh38]
Chr16:66279791..67506926 [GRCh37]
Chr16:64837292..66064427 [NCBI36]
Chr16:16q21-22.1
pathogenic
1 to 10 of 88 rows

Predicted Target Of
Summary Value
Count of predictions:1955
Count of miRNA genes:787
Interacting mature miRNAs:936
Transcripts:ENST00000348579, ENST00000562122, ENST00000565726, ENST00000566075, ENST00000567311, ENST00000568650
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597098162GWAS1194236_Hcomparative body size at age 10, self-reported QTL GWAS1194236 (human)3e-16comparative body size at age 10, self-reported166741573667415737Human
597042899GWAS1138973_Hvolumetric bone mineral density QTL GWAS1138973 (human)0.0000009volumetric bone mineral densityvolumetric bone mineral density (CMO:0001553)166740638667406387Human
597346097GWAS1442171_Hbody mass index QTL GWAS1442171 (human)3e-11body mass indexbody mass index (BMI) (CMO:0000105)166741573667415737Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2436 2788 2243 4972 1722 2347 6 624 1852 465 2269 7216 6383 52 3733 1 852 1744 1613 174 1


1 to 24 of 24 rows
RefSeq Transcripts NM_001323627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006721185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054380188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC009061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM724650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX111231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA432496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY054038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U90653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 24 of 24 rows

Ensembl Acc Id: ENST00000348579   ⟹   ENSP00000340299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,394,419 - 67,416,474 (-)Ensembl
Ensembl Acc Id: ENST00000562122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,395,505 - 67,404,553 (-)Ensembl
Ensembl Acc Id: ENST00000565726   ⟹   ENSP00000459264
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,394,152 - 67,416,477 (-)Ensembl
Ensembl Acc Id: ENST00000566075
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,394,425 - 67,396,257 (-)Ensembl
Ensembl Acc Id: ENST00000567311
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,395,566 - 67,396,287 (-)Ensembl
Ensembl Acc Id: ENST00000568650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,404,158 - 67,416,833 (-)Ensembl
RefSeq Acc Id: NM_001323627   ⟹   NP_001310556
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
CHM1_11668,835,705 - 68,857,780 (-)NCBI
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013304   ⟹   NP_037436
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
GRCh371667,428,322 - 67,450,339 (-)RGD
Build 361665,985,829 - 66,007,878 (-)NCBI Archive
Celera1651,936,522 - 51,958,539 (-)RGD
HuRef1653,301,558 - 53,323,519 (-)RGD
CHM1_11668,835,705 - 68,857,722 (-)NCBI
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006721185   ⟹   XP_006721248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011523060   ⟹   XP_011521362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,406,367 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024450245   ⟹   XP_024306013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024450246   ⟹   XP_024306014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024450247   ⟹   XP_024306015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,394,152 - 67,416,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054380184   ⟹   XP_054236159
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380185   ⟹   XP_054236160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380186   ⟹   XP_054236161
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380187   ⟹   XP_054236162
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,211,253 (-)NCBI
RefSeq Acc Id: XM_054380188   ⟹   XP_054236163
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,188,923 - 73,201,055 (-)NCBI
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: NP_037436   ⟸   NM_013304
- Peptide Label: isoform 1
- UniProtKB: O15461 (UniProtKB/Swiss-Prot),   Q8WTX9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006721248   ⟸   XM_006721185
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011521362   ⟸   XM_011523060
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001310556   ⟸   NM_001323627
- Peptide Label: isoform 2
- UniProtKB: I3L202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024306015   ⟸   XM_024450247
- Peptide Label: isoform X4
- Sequence:
DHHC   Palmitoyltransferase DHHC

Name Modeler Protein Id AA Range Protein Structure
AF-Q8WTX9-F1-model_v2 AlphaFold Q8WTX9 1-485 view protein structure

RGD ID:6793617
Promoter ID:HG_KWN:24035
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:OTTHUMT00000268845,   UC002ETC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,007,536 - 66,008,036 (-)MPROMDB
RGD ID:7232545
Promoter ID:EPDNEW_H22018
Type:initiation region
Name:ZDHHC1_1
Description:zinc finger DHHC-type containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,416,477 - 67,416,537EPDNEW


1 to 21 of 21 rows
Database
Acc Id
Source(s)
COSMIC ZDHHC1 COSMIC
Ensembl Genes ENSG00000159714 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000348579 ENTREZGENE
  ENST00000348579.6 UniProtKB/Swiss-Prot
  ENST00000565726 ENTREZGENE
GTEx ENSG00000159714 GTEx
HGNC ID HGNC:17916 ENTREZGENE
Human Proteome Map ZDHHC1 Human Proteome Map
InterPro Palmitoyltrfase_DHHC UniProtKB/Swiss-Prot
  PFA4/ZDH16/20/ERF2-like UniProtKB/Swiss-Prot
KEGG Report hsa:29800 UniProtKB/Swiss-Prot
NCBI Gene 29800 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC1 UniProtKB/Swiss-Prot
  ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam DHHC UniProtKB/Swiss-Prot
PharmGKB PA38261 PharmGKB
PROSITE DHHC UniProtKB/Swiss-Prot
UniProt I3L202 ENTREZGENE, UniProtKB/TrEMBL
  O15461 ENTREZGENE
  Q8WTX9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O15461 UniProtKB/Swiss-Prot
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-16 ZDHHC1  zinc finger DHHC-type containing 1    zinc finger, DHHC-type containing 1  Symbol and/or name change 5135510 APPROVED