Pax3 (paired box 3) - Rat Genome Database

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Gene: Pax3 (paired box 3) Mus musculus
Analyze
Symbol: Pax3
Name: paired box 3
RGD ID: 1552573
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; chromatin binding activity; and transcription coregulator binding activity. Acts upstream of or within several processes, including nervous system development; regulation of somitogenesis; and regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including branchial arch; central nervous system; embryo mesenchyme; nose; and urinary system. Used to study Waardenburg syndrome; Waardenburg syndrome type 1; alveolar rhabdomyosarcoma; and neural tube defect. Human ortholog(s) of this gene implicated in Waardenburg syndrome; Waardenburg syndrome type 1; Waardenburg syndrome type 3; alveolar rhabdomyosarcoma; and craniofacial-deafness-hand syndrome. Orthologous to human PAX3 (paired box 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: paired box gene 3; paired box protein Pax-3; Pax; Pax-3; PAX3/FKHR fusion; Sp; Spl; Splchl2; splotch
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,077,904 - 78,173,773 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl178,077,904 - 78,173,771 (-)EnsemblGRCm39 Ensembl
GRCm38178,101,267 - 78,197,136 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl178,101,267 - 78,197,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv37178,097,842 - 78,193,711 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36177,985,839 - 78,080,283 (-)NCBIMGSCv36mm8
Celera178,585,057 - 78,620,745 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map139.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R,R,R)-alpha-tocopherol  (EXP)
(S)-nicotine  (ISO)
1,2-dichloroethane  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-di-tert-butylphenol  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-bromo-2'-deoxyuridine  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
abacavir  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
ANTIMYCIN  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bromobenzene  (ISO)
cadmium atom  (EXP)
cadmium sulfate  (EXP)
caffeine  (ISO)
CGP 52608  (ISO)
CHIR 99021  (ISO)
choline  (EXP)
copper(II) sulfate  (ISO)
cycloheximide  (ISO)
D-glucose  (EXP,ISO)
dabigatran  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethylene glycol  (ISO)
fluoxetine  (EXP)
folic acid  (EXP,ISO)
FR900359  (ISO)
furan  (ISO)
gentamycin  (ISO)
glucose  (EXP,ISO)
Glutathione ethyl ester  (EXP)
glycolic acid  (ISO)
glyphosate  (EXP)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
methimazole  (ISO)
methylmercury chloride  (EXP,ISO)
methylparaben  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-ethyl-N-nitrosourea  (EXP)
nicotine  (ISO)
nilotinib  (ISO)
nitrofen  (ISO)
panobinostat  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (EXP,ISO)
propanal  (ISO)
propiconazole  (ISO)
Ptaquiloside  (EXP)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
stilbenoid  (EXP)
streptomycin  (ISO)
sunitinib  (ISO)
thalidomide  (ISO)
Theaflavin 3,3'-digallate  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axial skeleton morphology  (IAGP)
abnormal basisphenoid bone morphology  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal bone ossification  (IAGP)
abnormal bony labyrinth  (IAGP)
abnormal brain ventricle morphology  (IEA)
abnormal cardiac neural crest cell migration  (IAGP)
abnormal cardiac outflow tract development  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal coat/hair pigmentation  (IAGP)
abnormal common carotid artery morphology  (IAGP)
abnormal conotruncal ridge morphology  (IAGP)
abnormal cranial ganglia morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal dermomyotome development  (IAGP)
abnormal diaphragm development  (IAGP)
abnormal diaphragm morphology  (IAGP)
abnormal dorsal interneuron 4 morphology  (IAGP)
abnormal dorsal root ganglion morphology  (IAGP)
abnormal embryo morphology  (IAGP)
abnormal endolymphatic duct morphology  (IAGP)
abnormal enteric ganglia morphology  (IAGP)
abnormal epaxial muscle morphology  (IAGP)
abnormal eyelid development  (IAGP)
abnormal face development  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal frontal bone morphology  (IAGP)
abnormal glutaminergic neuron morphology  (IAGP)
abnormal hind foot hair pigmentation  (IAGP)
abnormal hindbrain morphology  (IAGP)
abnormal hindlimb morphology  (IAGP)
abnormal hypoglossal cord morphology  (IAGP)
abnormal hypoglossal nerve morphology  (IAGP)
abnormal intercostal muscle morphology  (IAGP)
abnormal interventricular septum morphology  (IAGP)
abnormal lateral ventricle morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal liver vasculature morphology  (IAGP)
abnormal major salivary gland morphology  (IAGP)
abnormal mammary line morphology  (IAGP)
abnormal mammary placode morphology  (IAGP)
abnormal mechanical nociception  (IAGP)
abnormal midbrain development  (IAGP)
abnormal muscle development  (IAGP)
abnormal muscle precursor cell migration  (IAGP)
abnormal muscle precursor cell morphology  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal myogenesis  (IAGP)
abnormal myotome development  (IAGP)
abnormal myotome morphology  (IAGP)
abnormal nasal bone morphology  (IAGP)
abnormal neural crest cell migration  (IAGP)
abnormal neural crest cell physiology  (IAGP)
abnormal neural fold elevation formation  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal nose morphology  (IAGP)
abnormal oculomotor nerve morphology  (IAGP)
abnormal osteoblast differentiation  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal palatal mesenchymal cell differentiation  (IAGP)
abnormal palatal mesenchymal cell proliferation  (IAGP)
abnormal palatal shelf bone ossification  (IAGP)
abnormal pharyngeal arch artery morphology  (IAGP)
abnormal premaxilla morphology  (IAGP)
abnormal pterygoid process morphology  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal rib development  (IAGP)
abnormal rib morphology  (IAGP)
abnormal rostral-caudal body axis extension  (IAGP)
abnormal secondary palate development  (IAGP)
abnormal semicircular canal morphology  (IAGP)
abnormal sixth pharyngeal arch artery morphology  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal snout morphology  (IAGP)
abnormal somatic sensory system morphology  (IAGP)
abnormal somite border morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal spinal cord morphology  (IAGP)
abnormal spine curvature  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal sternum ossification  (IAGP)
abnormal tail hair pigmentation  (IAGP)
abnormal tail morphology  (IEA)
abnormal thymus lobule morphology  (IAGP)
abnormal thymus morphology  (IAGP)
abnormal thyroid gland morphology  (IAGP)
abnormal tongue morphology  (IAGP)
abnormal tongue muscle morphology  (IAGP)
abnormal tongue position  (IAGP)
abnormal tooth morphology  (IAGP)
abnormal trochlear nerve morphology  (IAGP)
abnormal utricle morphology  (IAGP)
abnormal vascular smooth muscle morphology  (IAGP)
abnormal vena cava morphology  (IAGP)
abnormal ventral coat pigmentation  (IAGP)
abnormal vestibular saccule morphology  (IAGP)
absent alisphenoid bone  (IAGP)
absent choroid plexus  (IAGP)
absent coat pigmentation  (IEA)
absent dorsal root ganglion  (IAGP)
absent eyelids  (IAGP)
absent frontal bone  (IAGP)
absent gastric milk in neonates  (IAGP)
absent hypaxial muscle  (IAGP)
absent interparietal bone  (IAGP)
absent olfactory bulb  (IAGP)
absent palatine bone horizontal plate  (IAGP)
absent parietal bone  (IAGP)
absent premaxilla  (IAGP)
absent pterygoid process  (IAGP)
absent skeletal muscle  (IAGP)
absent skin pigmentation  (IEA)
absent thyroid gland  (IAGP)
absent ultimobranchial body  (IAGP)
adrenal medulla hyperplasia  (IAGP)
alisphenoid bone hypoplasia  (IAGP)
anophthalmia  (IAGP)
aorta stenosis  (IAGP)
atelectasis  (IAGP)
belly spot  (IAGP)
bifid tongue  (IAGP)
bilateral cleft palate  (IAGP)
caudal body truncation  (IAGP)
caudal rachischisis  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
cleft upper lip  (IAGP)
common truncal valve  (IAGP)
complete cleft palate  (IAGP)
congestive heart failure  (IAGP)
cranioschisis  (IAGP)
curly tail  (IAGP)
cyanosis  (IAGP)
decreased birth body size  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone ossification  (IAGP)
decreased cell proliferation  (IAGP)
decreased cochlea coiling  (IAGP)
decreased embryo size  (IAGP)
decreased heart left ventricle muscle contractility  (IAGP)
decreased neuron number  (IAGP)
decreased neuronal precursor cell number  (IAGP)
decreased palatal length  (IAGP)
decreased pruritus  (IAGP)
decreased satellite cell number  (IAGP)
decreased skeletal muscle fiber diameter  (IAGP)
decreased skeletal muscle mass  (IAGP)
decreased tail pigmentation  (IAGP)
decreased tympanic ring size  (IAGP)
delayed neural tube closure  (IAGP)
dilated heart left ventricle  (IAGP)
dilated heart right ventricle  (IAGP)
dilated pulmonary trunk  (IAGP)
diluted coat color  (IEA)
disorganized dorsal root ganglion  (IAGP)
double outlet right ventricle  (IAGP)
ectopic bone  (IAGP)
ectopic skeletal muscle  (IAGP)
ectopic thymus  (IAGP)
edema  (IAGP)
embryonic lethality  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
embryonic lethality, incomplete penetrance  (IEA)
exencephaly  (IAGP)
failure of eyelid fusion  (IAGP)
failure of palatal shelf elevation  (IAGP)
failure to gastrulate  (IAGP)
forebrain hypoplasia  (IAGP)
frontal bone hypoplasia  (IAGP)
fusion of vertebral bodies  (IAGP)
head spot  (IAGP)
hypaxial muscle hypoplasia  (IAGP)
hypopigmentation  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased chemical nociceptive threshold  (IAGP)
increased embryonic neuroepithelium apoptosis  (IAGP)
increased heart weight  (IAGP)
increased hematocrit  (IAGP)
increased liver weight  (IAGP)
increased mitotic index  (IEA)
increased rhabdomyosarcoma incidence  (IAGP)
increased skeletal muscle fiber density  (IAGP)
increased spleen weight  (IAGP)
increased thermal nociceptive threshold  (IAGP)
kinked tail  (IEA)
lacrimal bone hypoplasia  (IAGP)
lethality during fetal growth through weaning, complete penetrance  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
loss of GABAergic neurons  (IAGP)
loss of glutamate neurons  (IAGP)
maxilla hypoplasia  (IAGP)
meteorism  (IAGP)
midbrain hyperplasia  (IAGP)
midline facial cleft  (IAGP)
muscle hypoplasia  (IAGP)
muscular ventricular septal defect  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
no spontaneous movement  (IAGP)
ocular hypertelorism  (IAGP)
omphalocele  (IAGP)
open neural tube  (IAGP)
optic placode degeneration  (IAGP)
palatal shelf hypoplasia  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
pallor  (IAGP)
patent tricuspid valve  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
persistent right dorsal aorta  (IAGP)
persistent truncus arteriosus  (IAGP)
polycythemia  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IEA)
preweaning lethality, incomplete penetrance  (IAGP)
primary atelectasis  (IAGP)
pulmonary artery stenosis  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
retroesophageal right subclavian artery  (IAGP)
rib bifurcation  (IAGP)
rib fusion  (IAGP)
short endolymphatic duct  (IAGP)
short mandible  (IAGP)
short Meckel's cartilage  (IAGP)
short snout  (IAGP)
short soft palate  (IAGP)
small dorsal root ganglion  (IAGP)
small embryonic telencephalon  (IEA)
small mandible  (IAGP)
small snout  (IAGP)
small thoracic cavity  (IAGP)
small thyroid gland  (IAGP)
spina bifida  (IAGP)
spina bifida cystica  (IEA)
subcutaneous edema  (IAGP)
supravalvar pulmonary trunk stenosis  (IAGP)
thick interventricular septum  (IAGP)
thin dermal layer  (IAGP)
thin diaphragm muscle  (IAGP)
thin ventricular wall  (IAGP)
tongue ankylosis  (IAGP)
transverse fur striping  (IAGP)
turbinate hypoplasia  (IAGP)
variable body spotting  (IEA)
variable depigmentation  (IAGP)
ventricular septal defect  (IAGP)
vertebral fusion  (IAGP)
white spotting  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Pax3 mRNA is decreased in the hearts of rats with experimental diaphragmatic hernia. Gonzalez-Reyes S, etal., Pediatr Surg Int. 2005 Mar;21(3):203-7. Epub 2004 Dec 23.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Pax3 expression enhances PDGF-B-induced brainstem gliomagenesis and characterizes a subset of brainstem glioma. Misuraca KL, etal., Acta Neuropathol Commun. 2014 Oct 21;2:134. doi: 10.1186/s40478-014-0134-6.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The mutational spectrum in Waardenburg syndrome. Tassabehji M, etal., Hum Mol Genet. 1995 Nov;4(11):2131-7.
10. Gene expression signatures identify rhabdomyosarcoma subtypes and detect a novel t(2;2)(q35;p23) translocation fusing PAX3 to NCOA1. Wachtel M, etal., Cancer Res. 2004 Aug 15;64(16):5539-45.
11. Homozygous and heterozygous inheritance of PAX3 mutations causes different types of Waardenburg syndrome. Wollnik B, etal., Am J Med Genet A. 2003 Sep 15;122(1):42-5.
Additional References at PubMed
PMID:473084   PMID:1290160   PMID:1303254   PMID:1347148   PMID:1358796   PMID:1395725   PMID:1416080   PMID:1485966   PMID:1552554   PMID:1630580   PMID:1631953   PMID:1682057  
PMID:1685142   PMID:1754402   PMID:1771598   PMID:1821845   PMID:1962752   PMID:1974085   PMID:2022185   PMID:2045114   PMID:2218944   PMID:2246770   PMID:2339698   PMID:2619088  
PMID:2763211   PMID:2793182   PMID:3242494   PMID:3424222   PMID:3898457   PMID:4826095   PMID:5424503   PMID:5912439   PMID:6385329   PMID:6627032   PMID:6665745   PMID:7546735  
PMID:7556916   PMID:7556922   PMID:7600957   PMID:7600971   PMID:7601910   PMID:7651534   PMID:7720554   PMID:7720556   PMID:7720577   PMID:7731966   PMID:7744814   PMID:7801299  
PMID:7809114   PMID:7825605   PMID:7858167   PMID:7863329   PMID:7883790   PMID:7907014   PMID:7907867   PMID:7909605   PMID:7911756   PMID:7915533   PMID:7925010   PMID:7976186  
PMID:7981674   PMID:7981748   PMID:8001153   PMID:8005021   PMID:8050356   PMID:8069909   PMID:8099544   PMID:8100762   PMID:8126546   PMID:8155581   PMID:8162858   PMID:8163557  
PMID:8187635   PMID:8188220   PMID:8221886   PMID:8228963   PMID:8238963   PMID:8275849   PMID:8287471   PMID:8288218   PMID:8299937   PMID:8406007   PMID:8406486   PMID:8406487  
PMID:8421686   PMID:8447316   PMID:8453768   PMID:8490648   PMID:8512089   PMID:8529839   PMID:8563175   PMID:8565076   PMID:8565825   PMID:8565855   PMID:8575294   PMID:8622765  
PMID:8631247   PMID:8631261   PMID:8633043   PMID:8661050   PMID:8664898   PMID:8681797   PMID:8688464   PMID:8735950   PMID:8744440   PMID:8751373   PMID:8754282   PMID:8756299  
PMID:8786127   PMID:8787761   PMID:8837770   PMID:8854889   PMID:8918877   PMID:8943322   PMID:8951074   PMID:8954736   PMID:8955271   PMID:9006062   PMID:9016952   PMID:9043076  
PMID:9053326   PMID:9070329   PMID:9083694   PMID:9094721   PMID:9094722   PMID:9098922   PMID:9118797   PMID:9126293   PMID:9126297   PMID:9169087   PMID:9169845   PMID:9187079  
PMID:9200655   PMID:9230312   PMID:9232602   PMID:9256352   PMID:9262482   PMID:9297966   PMID:9334279   PMID:9344762   PMID:9352100   PMID:9353119   PMID:9374397   PMID:9389448  
PMID:9428409   PMID:9463628   PMID:9464541   PMID:9479498   PMID:9486530   PMID:9490412   PMID:9500544   PMID:9516748   PMID:9541113   PMID:9545534   PMID:9585504   PMID:9601985  
PMID:9603426   PMID:9622616   PMID:9636069   PMID:9641914   PMID:9662403   PMID:9671585   PMID:9675053   PMID:9690473   PMID:9731536   PMID:9736723   PMID:9739106   PMID:9767163  
PMID:9792553   PMID:9799236   PMID:9806772   PMID:9808779   PMID:9811581   PMID:9831647   PMID:9848852   PMID:9858722   PMID:9986734   PMID:9988216   PMID:10079220   PMID:10079225  
PMID:10079229   PMID:10079236   PMID:10090727   PMID:10191046   PMID:10197584   PMID:10208749   PMID:10226008   PMID:10230789   PMID:10231856   PMID:10328847   PMID:10331980   PMID:10349636  
PMID:10364424   PMID:10395791   PMID:10403250   PMID:10411402   PMID:10419687   PMID:10457014   PMID:10473117   PMID:10477293   PMID:10508520   PMID:10512192   PMID:10516314   PMID:10521655  
PMID:10529415   PMID:10529425   PMID:10545229   PMID:10556048   PMID:10603357   PMID:10603359   PMID:10617567   PMID:10653966   PMID:10686619   PMID:10699180   PMID:10704279   PMID:10751175  
PMID:10769239   PMID:10946068   PMID:11029008   PMID:11042159   PMID:11066097   PMID:11071760   PMID:11071781   PMID:11076861   PMID:11171399   PMID:11171995   PMID:11217851   PMID:11231058  
PMID:11256068   PMID:11334426   PMID:11423130   PMID:11493522   PMID:11498051   PMID:11585810   PMID:11684651   PMID:11688557   PMID:11700028   PMID:11747084   PMID:11782431   PMID:11784021  
PMID:11807043   PMID:11823447   PMID:11857794   PMID:11861759   PMID:11861760   PMID:11863357   PMID:11884616   PMID:11900971   PMID:11914272   PMID:11997098   PMID:12004056   PMID:12015293  
PMID:12016514   PMID:12062038   PMID:12086465   PMID:12135932   PMID:12142027   PMID:12152071   PMID:12242297   PMID:12356307   PMID:12358782   PMID:12372284   PMID:12401804   PMID:12413905  
PMID:12421714   PMID:12441304   PMID:12464179   PMID:12466851   PMID:12477932   PMID:12522123   PMID:12569128   PMID:12594042   PMID:12620989   PMID:12668617   PMID:12668636   PMID:12739027  
PMID:12810603   PMID:12854658   PMID:12874124   PMID:12925591   PMID:12948444   PMID:14170406   PMID:14499653   PMID:14516674   PMID:14517256   PMID:14602680   PMID:14628042   PMID:14665670  
PMID:14678836   PMID:14681479   PMID:14699577   PMID:14736747   PMID:14779004   PMID:15030763   PMID:15105374   PMID:15132998   PMID:15148315   PMID:15155583   PMID:15162501   PMID:15226254  
PMID:15259034   PMID:15322542   PMID:15361870   PMID:15366018   PMID:15376315   PMID:15384171   PMID:15465489   PMID:15486471   PMID:15489287   PMID:15520281   PMID:15545629   PMID:15568017  
PMID:15572686   PMID:15604102   PMID:15618518   PMID:15629702   PMID:15691760   PMID:15728667   PMID:15729346   PMID:15782199   PMID:15788460   PMID:15789408   PMID:15804569   PMID:15843801  
PMID:15882581   PMID:15893304   PMID:15899870   PMID:15930101   PMID:15964993   PMID:16029418   PMID:16141072   PMID:16141073   PMID:16142327   PMID:16166380   PMID:16166582   PMID:16179863  
PMID:16226775   PMID:16285903   PMID:16300735   PMID:16316407   PMID:16323077   PMID:16357211   PMID:16380438   PMID:16387292   PMID:16397144   PMID:16397891   PMID:16408284   PMID:16423343  
PMID:16467359   PMID:16510500   PMID:16537918   PMID:16571633   PMID:16582099   PMID:16602821   PMID:16624854   PMID:16712836   PMID:16720875   PMID:16728472   PMID:16787918   PMID:16824806  
PMID:16906226   PMID:16919269   PMID:16938278   PMID:16945326   PMID:16951257   PMID:16952014   PMID:17039375   PMID:17086203   PMID:17098221   PMID:17111379   PMID:17131407   PMID:17138667  
PMID:17166778   PMID:17194759   PMID:17207666   PMID:17229764   PMID:17273555   PMID:17275805   PMID:17323927   PMID:17360543   PMID:17360769   PMID:17396232   PMID:17408621   PMID:17418413  
PMID:17473173   PMID:17477400   PMID:17490632   PMID:17492753   PMID:17504940   PMID:17540357   PMID:17553906   PMID:17592144   PMID:17623803   PMID:17654714   PMID:17662948   PMID:17698292  
PMID:17704541   PMID:17727834   PMID:17728348   PMID:17868131   PMID:17927973   PMID:17932502   PMID:17959802   PMID:17967198   PMID:17974128   PMID:18053811   PMID:18086577   PMID:18198335  
PMID:18204461   PMID:18243171   PMID:18257070   PMID:18287559   PMID:18308300   PMID:18325909   PMID:18330927   PMID:18331887   PMID:18334251   PMID:18367555   PMID:18395835   PMID:18397758  
PMID:18435457   PMID:18469343   PMID:18483260   PMID:18483623   PMID:18513381   PMID:18522874   PMID:18538758   PMID:18538759   PMID:18539113   PMID:18539270   PMID:18554416   PMID:18593883  
PMID:18634775   PMID:18644785   PMID:18666806   PMID:18672055   PMID:18708529   PMID:18753144   PMID:18832392   PMID:18845762   PMID:18849531   PMID:18854138   PMID:18942111   PMID:19000668  
PMID:19023080   PMID:19095803   PMID:19097048   PMID:19100251   PMID:19103755   PMID:19123128   PMID:19123137   PMID:19135046   PMID:19149881   PMID:19168680   PMID:19207986   PMID:19221588  
PMID:19258013   PMID:19279136   PMID:19281780   PMID:19332644   PMID:19339268   PMID:19346403   PMID:19384958   PMID:19386638   PMID:19442434   PMID:19448158   PMID:19458195   PMID:19460349  
PMID:19460366   PMID:19520072   PMID:19531353   PMID:19554048   PMID:19633665   PMID:19666532   PMID:19698141   PMID:19705442   PMID:19723505   PMID:19729440   PMID:19733541   PMID:19741146  
PMID:19783738   PMID:19820125   PMID:19850029   PMID:19855129   PMID:19877269   PMID:19906978   PMID:19962975   PMID:20006729   PMID:20035737   PMID:20045680   PMID:20059953   PMID:20059955  
PMID:20059958   PMID:20079728   PMID:20095975   PMID:20145239   PMID:20152185   PMID:20211142   PMID:20356956   PMID:20368965   PMID:20412779   PMID:20532162   PMID:20534536   PMID:20573702  
PMID:20630950   PMID:20652258   PMID:20665884   PMID:20680010   PMID:20699298   PMID:20807571   PMID:20932939   PMID:20956382   PMID:20960561   PMID:20978076   PMID:21143873   PMID:21150899  
PMID:21157040   PMID:21169561   PMID:21177349   PMID:21177767   PMID:21211521   PMID:21254332   PMID:21254333   PMID:21267068   PMID:21303853   PMID:21316601   PMID:21331042   PMID:21354128  
PMID:21377456   PMID:21420400   PMID:21421465   PMID:21422169   PMID:21440680   PMID:21478499   PMID:21512107   PMID:21539826   PMID:21556048   PMID:21565611   PMID:21600894   PMID:21602886  
PMID:21606373   PMID:21664901   PMID:21693562   PMID:21698205   PMID:21708977   PMID:21710609   PMID:21730146   PMID:21731673   PMID:21749861   PMID:21750035   PMID:21782525   PMID:21799763  
PMID:21867959   PMID:21873635   PMID:21882254   PMID:21929743   PMID:21930923   PMID:21943152   PMID:21949878   PMID:21956886   PMID:21959220   PMID:21997191   PMID:22110056   PMID:22129828  
PMID:22147907   PMID:22159413   PMID:22187527   PMID:22190459   PMID:22216266   PMID:22228095   PMID:22290434   PMID:22315423   PMID:22349825   PMID:22377357   PMID:22394517   PMID:22438570  
PMID:22457346   PMID:22485132   PMID:22508726   PMID:22513369   PMID:22522309   PMID:22526732   PMID:22558231   PMID:22629237   PMID:22696295   PMID:22710718   PMID:22723526   PMID:22736793  
PMID:22745251   PMID:22768305   PMID:22848431   PMID:22862948   PMID:22863532   PMID:22884393   PMID:22940113   PMID:22960170   PMID:22972626   PMID:22983563   PMID:22987639   PMID:22987640  
PMID:22988430   PMID:23020925   PMID:23024056   PMID:23058914   PMID:23079662   PMID:23081715   PMID:23129807   PMID:23169059   PMID:23283078   PMID:23288605   PMID:23383217   PMID:23384562  
PMID:23410975   PMID:23418536   PMID:23477786   PMID:23506836   PMID:23527126   PMID:23555292   PMID:23622066   PMID:23650549   PMID:23671652   PMID:23673330   PMID:23760954   PMID:23765941  
PMID:23773994   PMID:23785297   PMID:23827310   PMID:23872235   PMID:23897781   PMID:23900540   PMID:23907538   PMID:23934123   PMID:23946446   PMID:23968884   PMID:23969310   PMID:23983188  
PMID:24036067   PMID:24055173   PMID:24098136   PMID:24098141   PMID:24121508   PMID:24146773   PMID:24170322   PMID:24173031   PMID:24213582   PMID:24284205   PMID:24290375   PMID:24309470  
PMID:24409333   PMID:24443808   PMID:24453992   PMID:24528677   PMID:24565836   PMID:24634098   PMID:24662046   PMID:24677751   PMID:24687876   PMID:24760871   PMID:24769727   PMID:24815547  
PMID:24821700   PMID:24844572   PMID:24871946   PMID:24875805   PMID:24927569   PMID:24942009   PMID:24952961   PMID:25005473   PMID:25030697   PMID:25119037   PMID:25217815   PMID:25220152  
PMID:25236433   PMID:25258086   PMID:25267720   PMID:25271623   PMID:25446276   PMID:25466249   PMID:25605943   PMID:25659124   PMID:25715398   PMID:25753732   PMID:25774014   PMID:25794678  
PMID:25799573   PMID:25800090   PMID:25807280   PMID:25917818   PMID:25942625   PMID:25959774   PMID:25980463   PMID:26062940   PMID:26109658   PMID:26116661   PMID:26153230   PMID:26166575  
PMID:26207754   PMID:26212322   PMID:26237517   PMID:26253404   PMID:26297811   PMID:26329581   PMID:26387456   PMID:26393505   PMID:26441343   PMID:26459221   PMID:26481065   PMID:26496195  
PMID:26538636   PMID:26545946   PMID:26587692   PMID:26621269   PMID:26688546   PMID:26839363   PMID:26839365   PMID:26949601   PMID:26952979   PMID:26954549   PMID:26988119   PMID:27014961  
PMID:27114066   PMID:27144312   PMID:27151977   PMID:27223328   PMID:27300003   PMID:27302397   PMID:27329940   PMID:27346341   PMID:27349434   PMID:27370713   PMID:27381226   PMID:27415617  
PMID:27446912   PMID:27491074   PMID:27594590   PMID:27651434   PMID:27702788   PMID:27784329   PMID:27906130   PMID:27993983   PMID:28043919   PMID:28087629   PMID:28172500   PMID:28177282  
PMID:28228264   PMID:28334989   PMID:28343944   PMID:28381738   PMID:28434801   PMID:28438836   PMID:28625870   PMID:28807903   PMID:28827394   PMID:28838968   PMID:28882193   PMID:28883017  
PMID:28891097   PMID:28893950   PMID:28943254   PMID:29031500   PMID:29073101   PMID:29079520   PMID:29084951   PMID:29231808   PMID:29285798   PMID:29394901   PMID:29439133   PMID:29463853  
PMID:29467244   PMID:29523871   PMID:29543863   PMID:29555813   PMID:29670077   PMID:29674978   PMID:29679560   PMID:29725084   PMID:29768404   PMID:29771971   PMID:29859889   PMID:29882512  
PMID:29975682   PMID:30071041   PMID:30093562   PMID:30106373   PMID:30130585   PMID:30134070   PMID:30169530   PMID:30366904   PMID:30408103   PMID:30561639   PMID:30581079   PMID:30604848  
PMID:30683671   PMID:30801883   PMID:30807574   PMID:30846445   PMID:30853441   PMID:30872278   PMID:30917309   PMID:31006621   PMID:31006622   PMID:31070778   PMID:31127120   PMID:31130354  
PMID:31241461   PMID:31348492   PMID:31461644   PMID:31491724   PMID:31625560   PMID:31636139   PMID:31655130   PMID:31685991   PMID:31699935   PMID:31747096   PMID:31789450   PMID:32047912  
PMID:32049039   PMID:32094117   PMID:32105214   PMID:32160556   PMID:32616504   PMID:32692983   PMID:32984348   PMID:33053343   PMID:33206716   PMID:33214242   PMID:33298461   PMID:33336498  
PMID:33454374   PMID:33750945   PMID:33839113   PMID:33935652   PMID:34162961   PMID:34321664   PMID:34351410   PMID:34433040   PMID:34490272   PMID:34490995   PMID:34544261   PMID:34590699  
PMID:34906895   PMID:35076017   PMID:35149920   PMID:35181706   PMID:35358427   PMID:35399523   PMID:35514236   PMID:35618666   PMID:35645295   PMID:35669512   PMID:35713404   PMID:35736367  
PMID:35781558   PMID:35806430   PMID:35815610   PMID:35817979   PMID:35839257   PMID:35859073   PMID:35874842   PMID:35894043   PMID:35899771   PMID:35942939   PMID:35970860   PMID:36008423  
PMID:36017733   PMID:36154712   PMID:36196625   PMID:36210210   PMID:36292593   PMID:36384129   PMID:36400788   PMID:36724256   PMID:36867129   PMID:36878279   PMID:36916392   PMID:37246520  
PMID:37267426   PMID:37272529   PMID:37298722   PMID:37315133   PMID:37408453   PMID:37414952   PMID:37589570   PMID:37756583   PMID:37885410   PMID:37968277   PMID:38048357   PMID:38097036  
PMID:38108810   PMID:38278860   PMID:38295182   PMID:38345319   PMID:38466355   PMID:38501709   PMID:38682273   PMID:38696583   PMID:39082789   PMID:39157903   PMID:39378988   PMID:39555938  


Genomics

Comparative Map Data
Pax3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,077,904 - 78,173,773 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl178,077,904 - 78,173,771 (-)EnsemblGRCm39 Ensembl
GRCm38178,101,267 - 78,197,136 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl178,101,267 - 78,197,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv37178,097,842 - 78,193,711 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36177,985,839 - 78,080,283 (-)NCBIMGSCv36mm8
Celera178,585,057 - 78,620,745 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map139.79NCBI
PAX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,199,887 - 222,298,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,199,887 - 222,298,998 (-)EnsemblGRCh38hg38GRCh38
GRCh372223,064,606 - 223,163,717 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,772,851 - 222,871,944 (-)NCBINCBI36Build 36hg18NCBI36
Build 342222,891,555 - 222,989,205NCBI
Celera2216,832,726 - 216,931,738 (-)NCBICelera
Cytogenetic Map2q36.1NCBI
HuRef2214,918,697 - 215,017,780 (-)NCBIHuRef
CHM1_12223,071,095 - 223,170,215 (-)NCBICHM1_1
T2T-CHM13v2.02222,684,993 - 222,784,124 (-)NCBIT2T-CHM13v2.0
Pax3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,015,960 - 87,112,531 (-)NCBIGRCr8
mRatBN7.2979,567,455 - 79,664,042 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl979,568,634 - 79,664,042 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx987,998,443 - 88,093,830 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0993,111,318 - 93,206,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0991,509,872 - 91,605,274 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0984,004,004 - 84,101,226 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,005,183 - 84,101,172 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0983,765,158 - 83,871,411 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4977,477,813 - 77,576,632 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1977,692,768 - 77,692,881 (-)NCBI
Celera977,080,699 - 77,176,237 (-)NCBICelera
Cytogenetic Map9q33NCBI
Pax3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545311,463,379 - 11,558,006 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545311,463,407 - 11,558,001 (+)NCBIChiLan1.0ChiLan1.0
PAX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213124,814,872 - 124,914,320 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B124,829,836 - 124,951,447 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B109,441,938 - 109,541,449 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B228,022,453 - 228,121,850 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B228,022,453 - 228,121,874 (-)Ensemblpanpan1.1panPan2
PAX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13728,346,476 - 28,443,648 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3728,346,563 - 28,444,561 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3729,183,832 - 29,282,546 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03728,371,451 - 28,469,641 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3728,371,535 - 28,469,658 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13728,283,899 - 28,382,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03728,214,748 - 28,313,220 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03728,233,000 - 28,331,742 (-)NCBIUU_Cfam_GSD_1.0
Dog Cytomap37q16-q17NCBI
Pax3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303177,872,678 - 177,964,983 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365694,216,900 - 4,307,815 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365694,215,513 - 4,307,815 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15124,094,295 - 124,193,011 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115124,093,803 - 124,193,041 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PAX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110108,125,198 - 108,225,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10108,125,747 - 108,224,478 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604091,149,850 - 91,250,433 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248232,871,162 - 2,961,944 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248232,870,762 - 2,963,134 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pax3
4562 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2617
Count of miRNA genes:724
Interacting mature miRNAs:998
Transcripts:ENSMUST00000004994, ENSMUST00000087086, ENSMUST00000172555
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
X59358  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38178,103,108 - 78,103,258UniSTSGRCm38
MGSCv37178,099,683 - 78,099,833UniSTSGRCm37
Celera178,586,916 - 78,587,066UniSTS
Cytogenetic Map1C4UniSTS
cM Map144.0UniSTS
Whitehead/MRC_RH11140.26UniSTS
Whitehead_YAC1 UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37178,190,344 - 78,191,905UniSTSGRCm37
Cytogenetic Map1C4UniSTS
cM Map144.0UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38178,193,769 - 78,195,330UniSTSGRCm38
MGSCv37178,190,344 - 78,191,905UniSTSGRCm37
Cytogenetic Map1C4UniSTS
cM Map144.0UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS
cM Map144.0UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS
X59358  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38178,103,235 - 78,103,320UniSTSGRCm38
MGSCv37178,099,810 - 78,099,895UniSTSGRCm37
Celera178,587,043 - 78,587,128UniSTS
Cytogenetic Map1C4UniSTS
Whitehead/MRC_RH11140.26UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS
Pax3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY743239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S66429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S66433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000004994   ⟹   ENSMUSP00000004994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,077,904 - 78,173,475 (-)Ensembl
GRCm38.p6 Ensembl178,101,267 - 78,196,838 (-)Ensembl
Ensembl Acc Id: ENSMUST00000087086   ⟹   ENSMUSP00000084320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,077,907 - 78,173,771 (-)Ensembl
GRCm38.p6 Ensembl178,101,270 - 78,197,134 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,160,093 - 78,173,750 (-)Ensembl
GRCm38.p6 Ensembl178,183,456 - 78,197,113 (-)Ensembl
RefSeq Acc Id: NM_001159520   ⟹   NP_001152992
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,077,904 - 78,173,773 (-)NCBI
GRCm38178,101,267 - 78,197,136 (-)NCBI
MGSCv37178,097,842 - 78,193,711 (-)RGD
Celera178,585,057 - 78,620,745 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_008781   ⟹   NP_032807
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,077,904 - 78,173,773 (-)NCBI
GRCm38178,101,267 - 78,197,136 (-)NCBI
MGSCv37178,097,842 - 78,193,711 (-)RGD
Celera178,585,057 - 78,620,745 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032807   ⟸   NM_008781
- Peptide Label: isoform a
- UniProtKB: Q8BRE7 (UniProtKB/Swiss-Prot),   Q3UFQ9 (UniProtKB/Swiss-Prot),   Q9CXI6 (UniProtKB/Swiss-Prot),   P24610 (UniProtKB/Swiss-Prot),   Q3UGH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152992   ⟸   NM_001159520
- Peptide Label: isoform b
- UniProtKB: Q3TZM4 (UniProtKB/TrEMBL),   Q8BRF1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000084320   ⟸   ENSMUST00000087086
Ensembl Acc Id: ENSMUSP00000004994   ⟸   ENSMUST00000004994
Protein Domains
Homeobox   Paired   Paired box protein 7 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P24610-F1-model_v2 AlphaFold P24610 1-479 view protein structure

Promoters
RGD ID:6818214
Promoter ID:MM_KWN:1271
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Lung
Transcripts:NM_001159520,   NM_008781,   UC007BQD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36178,193,459 - 78,193,959 (-)MPROMDB
RGD ID:6874186
Promoter ID:EPDNEW_M544
Type:single initiation site
Name:Pax3_1
Description:Mus musculus paired box 3 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38178,197,219 - 78,197,279EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97487 AgrOrtholog
Ensembl Genes ENSMUSG00000004872 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004994 ENTREZGENE
  ENSMUST00000004994.16 UniProtKB/TrEMBL
  ENSMUST00000087086 ENTREZGENE
  ENSMUST00000087086.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_DNA_bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Paired_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax7_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18505 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97487 ENTREZGENE
NCBI Gene 18505 ENTREZGENE
PANTHER PAIRED BOX PROTEIN PAX-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45636 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pax7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pax3 PhenoGen
PRINTS PAIREDBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P24610 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TZM4 ENTREZGENE, UniProtKB/TrEMBL
  Q3UFQ9 ENTREZGENE
  Q3UGH9 ENTREZGENE, UniProtKB/TrEMBL
  Q5G871_MOUSE UniProtKB/TrEMBL
  Q8BRE7 ENTREZGENE
  Q8BRF1 ENTREZGENE, UniProtKB/TrEMBL
  Q9CXI6 ENTREZGENE
  Q9CZK7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UFQ9 UniProtKB/Swiss-Prot
  Q8BRE7 UniProtKB/Swiss-Prot
  Q9CXI6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Pax3  paired box 3    paired box gene 3  Symbol and/or name change 5135510 APPROVED