Pax3 (paired box 3) - Rat Genome Database

Name: Pax3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pax3 (paired box 3) Ictidomys tridecemlineatus

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Symbol:

Pax3

Name:

paired box 3

RGD ID:

12588756

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); HMG box domain binding (ortholog); transcription coregulator binding (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); developmental pigmentation (ortholog); ASSOCIATED WITH alveolar rhabdomyosarcoma (ortholog); brain stem glioma (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

paired box 3, transcript variant X1; paired box 3, transcript variant X2; paired box 3, transcript variant X3; paired box 3, transcript variant X4; paired box 3, transcript variant X5; paired box 3, transcript variant X6; paired box protein Pax-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PAX3 (paired box 3)	NCBI	Ortholog
Mus musculus (house mouse):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	177,872,678 - 177,964,983 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	4,216,900 - 4,307,815 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	4,215,513 - 4,307,815 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alveolar rhabdomyosarcoma (ISO)

brain stem glioma (ISO)

congenital diaphragmatic hernia (ISO)

Congenital Hand Deformities (ISO)

Craniofacial Abnormalities (ISO)

craniofacial-deafness-hand syndrome (ISO)

Deafness (ISO)

Diaphragmatic Hernia (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

intellectual disability (ISO)

Nervous System Malformations (ISO)

neural tube defect (ISO)

Neurodevelopmental Disorders (ISO)

ocular albinism with sensorineural deafness (ISO)

sarcoma (ISO)

sinonasal undifferentiated carcinoma (ISO)

spina bifida (ISO)

Usher syndrome (ISO)

Van der Hoeve Halbertsma Waardenburg Gualdi Syndrome (ISO)

Waardenburg syndrome (ISO)

Waardenburg syndrome type 1 (ISO)

Waardenburg syndrome type 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure morphogenesis (IEA)

cell migration (ISO)

cell population proliferation (ISO)

developmental pigmentation (ISO)

heart development (ISO)

mammary gland specification (ISO)

muscle organ development (ISO)

myoblast migration (ISO)

myoblast proliferation (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

nervous system development (IEA)

neural crest cell migration (ISO)

neural tube closure (ISO)

neural tube development (ISO)

neuron fate commitment (ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of stem cell proliferation (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of somitogenesis (ISO)

regulation of transcription by RNA polymerase II (IEA)

skeletal muscle organ development (ISO)

spinal cord association neuron differentiation (ISO)

stem cell proliferation (ISO)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (ISO)

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

HMG box domain binding (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

transcription coregulator binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pax3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	177,872,678 - 177,964,983 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	4,216,900 - 4,307,815 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	4,215,513 - 4,307,815 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PAX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	222,199,887 - 222,298,998 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	222,199,887 - 222,298,998 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	223,064,606 - 223,163,717 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	222,772,851 - 222,871,944 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	222,891,555 - 222,989,205	NCBI
Celera	2	216,832,726 - 216,931,738 (-)	NCBI		Celera
Cytogenetic Map	2	q36.1	NCBI
HuRef	2	214,918,697 - 215,017,780 (-)	NCBI		HuRef
CHM1_1	2	223,071,095 - 223,170,215 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	222,684,993 - 222,784,124 (-)	NCBI		T2T-CHM13v2.0

Pax3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	78,077,904 - 78,173,773 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	78,077,904 - 78,173,771 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	78,101,267 - 78,197,136 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	78,101,267 - 78,197,134 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	78,097,842 - 78,193,711 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	77,985,839 - 78,080,283 (-)	NCBI		MGSCv36	mm8
Celera	1	78,585,057 - 78,620,745 (-)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	39.79	NCBI

Pax3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	87,015,960 - 87,112,531 (-)	NCBI		GRCr8
mRatBN7.2	9	79,567,455 - 79,664,042 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	79,568,634 - 79,664,042 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	87,998,443 - 88,093,830 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	93,111,318 - 93,206,669 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	91,509,872 - 91,605,274 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	84,004,004 - 84,101,226 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	84,005,183 - 84,101,172 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	83,765,158 - 83,871,411 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	77,477,813 - 77,576,632 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	77,692,768 - 77,692,881 (-)	NCBI
Celera	9	77,080,699 - 77,176,237 (-)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

Pax3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	11,463,379 - 11,558,006 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	11,463,407 - 11,558,001 (+)	NCBI	ChiLan1.0	ChiLan1.0

PAX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	124,814,872 - 124,914,320 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	124,829,836 - 124,951,447 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	109,441,938 - 109,541,449 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	228,022,453 - 228,121,850 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	228,022,453 - 228,121,874 (-)	Ensembl	panpan1.1		panPan2

PAX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	28,346,476 - 28,443,648 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	28,346,563 - 28,444,561 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	29,183,832 - 29,282,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	28,371,451 - 28,469,641 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	28,371,535 - 28,469,658 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	28,283,899 - 28,382,350 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	28,214,748 - 28,313,220 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	28,233,000 - 28,331,742 (-)	NCBI		UU_Cfam_GSD_1.0
Dog Cytomap	37	q16-q17	NCBI

PAX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	124,094,295 - 124,193,011 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	124,093,803 - 124,193,041 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PAX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	108,125,198 - 108,225,217 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	108,125,747 - 108,224,478 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	91,149,850 - 91,250,433 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pax3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	2,871,162 - 2,961,944 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	2,870,762 - 2,963,134 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005330532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005330534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000008646 ⟹ ENSSTOP00000007751

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936569	4,216,900 - 4,307,815 (-)	Ensembl

RefSeq Acc Id:

XM_005330531 ⟹ XP_005330588

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	177,872,678 - 177,964,983 (-)	NCBI
SpeTri2.0	NW_004936569	4,215,513 - 4,307,815 (-)	NCBI

Sequence:

show sequence

ACTCAGTGTCACGACGGGAGGAGACTCTGGCCGCGCTTGCGTTCCCCCCCTCCCTCGCTCGCCG
TGGCGCTCTGAGCCCCCTTTCCAGCGCCCCCAGCTGCGGGGCCGTTCGCCCGGACTCGAACCAA
ACTTTTCCGCCCTGGGTTTGGGATCCTGGATTCTAGGGCCTGCCCGCCCCTTTCCCGGGTTCCA
CCTCGAGCTCTGGACTTGGAGCTAGCAGCCCCCCTCCCCGCGTCTCTCCCTCCTGTCTTTTTGG
GGAGGAGCTCTTCACGCTCCGGAGAGTTCCCGAGGGTCGCCGCGCTAGCGTCTCTGTTTTGCCT
TCACCTGGATATAATTTCCTAGAGAAGCTGCCCCCAGGATGACCACGCTGGCCGGTGCTGTGCC
CAGGATGATGCGGCCCGGCCCGGGGCAGAACTACCCACGCAGCGGGTTCCCGCTAGAAGTATCC
ACTCCCCTCGGCCAGGGCCGAGTCAACCAGCTCGGCGGCGTTTTTATCAACGGCAGGCCGCTGC
CCAACCACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATTCGGCCCTGCGTCATCTC
TCGCCAACTGCGCGTGTCCCACGGCTGCGTCTCTAAGATTCTGTGCAGGTATCAAGAAACAGGC
TCCATCCGTCCAGGTGCCATCGGAGGCAGCAAGCCCAAGCAGGTGACAACGCCTGACGTGGAGA
AGAAAATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGGGACAAATT
ACTCAAGGACGCGGTCTGTGATCGAAACACCGTGCCCTCAGTGAGTTCCATCAGCCGCATCCTG
AGGAGTAAATTTGGGAAAGGAGAAGAGGAGGAGGCCGACCTGGAGAGGAAGGAGGCTGAAGAAA
GCGAGAAAAAGGCTAAGCACAGCATCGACGGCATCTTGAGCGAGCGAGCCTCAGCACCTCAATC
AGACGAAGGCTCTGACATTGACTCCGAACCAGATTTGCCACTGAAGAGGAAACAGCGCAGGAGC
CGGACCACCTTCACGGCAGAGCAGCTGGAAGAGCTGGAGCGTGCTTTCGAGAGAACCCACTACC
CTGACATTTACACCAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACTGAGGCCCGAGTGCAGGT
CTGGTTTAGCAATCGCCGTGCAAGATGGAGGAAGCAAGCTGGAGCCAATCAGCTGATGGCTTTC
AACCATCTCATTCCGGGGGGATTCCCTCCCACTGCCATGCCGACCCTGCCAACATACCAGCTGT
CGGAGACCTCGTACCAGCCCACAGCTATCCCACAAGCCGTGTCGGATCCCAGCAGCACCGTTCA
CAGACCTCAGCCGCTTCCTCCGAGCACCGTACACCAAAGCACTCTTCCTTCGAACCCGGACAGC
AGCTCTGCTTACTGCCTCCCCAGCACCAGGCACGGATTTTCCAGCTATTCAGACAGCTTTGTGC
CTCCGTCGGGGCCCTCCAACCCCATGAACCCCGCCATTGGCAATGGCCTTTCACCTCAGGTAAT
GGGACTCCTGACCAACCATGGCGGGGTACCTCATCAGCCTCAGACCGATTATGCGCTCTCCCCT
CTCACTGGGGGCCTGGAACCTACGACCACGGTGTCGGCCAGCTGCAGTCAGAGACTAGACCATA
TGAAGAGCTTGGACAGTCTGCCAACATCTCAGTCCTACTGTCCACCCACCTATAGCACCACAGG
CTACAGTATGGACCCTGTCACGGGCTACCAATATGGGCAGTACGGACAAAGTGCCTTTCATTAT
CTCAAGCCAGATATTGCATAAACGAACTGTCCACTTGGAGCTAAAACTGGCCCTGCTTCTGGTC
TCCACAGCCTAGACGTGAAGAGTCTTCTCAGAAAAAAAAAAAAAAAATTCATCCTTTGGGGGAG
GTGGAGGCAAAGAGCAGCAATTGATTTTCTTTCTGCAAAAGTTGGTTTCAGCTTCTTTTGAACA
GGATGGATGACCGCAGCGGAGAAGATAAGGACCTGGAGCCACAAAAGACTCAAGCGACATTTCA
AAACAATGGCTCAACCTGACTACAGATCCAAATATCCCAACTCTTTATTGCTGATGATCAAGGA
GCTCAAACATTCCATTCTGTGTGTGTCTGTGTGTTTATCGGAGACTTATGGACTGTTTTGAGCA
AGCAGAATGTTCTAAAGTATATTCGGAGGAAACTCTATAACACGTTTGATGTCGGTGACTTTAA
AACTGCTCACTTATCGAAGCAGGAAAGGAGGAATCCCTGACTTGTACACACTGGAAATTAATCT
AAAAATAAAGGCCACCATATTTTAGGAAGCTAGACTAGATGTAAAGGACCTCCCGAATAATAAA
TTATTTGTTATCCTATCCTCGTTTAGAATCTAGTTGTCAATAAATGTCCCGGACACGTTTTGCC
AACAGGATGTGAGATGACAGGAAGAAAAGCTTGTTTTTCTTTTCCGGTGTGGGGAGAGGTGTAT
GACATTTTTCCAATTCACCTTCATTTGGAAGCCAACCCGGGCAGGGGGAGGGCCCGGCCAAGTG
ACGTGCGTCACATACCTGCTTTTCCGTGTGCAATACTGTGTACCTCACAGACACTTTGGCCACG
GCCAGAGTGATAGAAATGAAACCAGAACTATATTTTTGCAGGGGCTTTTATTTTTGCAGCCCGG
AATTCATTGTGGTAGAATGCAGTGATGTTTGCCGTTTGCTGAACAACCCACACCCAGCTTGCTC
CTTTTGATTAGAGACCGTGTCAGAGAATAGTGCTTTTTAAAATGATGACGTTTACATTCTTCTC
TTTTCTATGAAAGGCAGGGCAAGAGCAGAAATGTCCACGTGGCTCTCATGTACTTTTAAATTAT
ACAATGATATCCAATATTAAAAGATTATAGGAACCGAGGTTTACATACGTTTATGTGGTGACAT
TTTAGAATGTCAATAAAAAATTTTTTTTCTTTTCTTTGAAATGTTAAGAGGAACAAGAAAGGTG
GAAGGCAGTGTTATTTATTTCTTTCTATTCTTGGAATCATGAATGAGGTAGGCACAAATACATT
CCTTTTAGAGTGAAGAACGGTGACTGTAGTGCATTTAGTGAGACGACACTAGGCGTAGAACTGA
GGTTCGTTCCTGCATTGGACAAGGGCGATGGAATGAGAGAACTAGGATCTTTGTGTTGCAGCCT
CAGCCAACAACAAAGTGTTGTAAAAATGTCTTTCATGTAAAAAGTGCAGTAAATATTTACTATT
TATAATGAATAAACAGTTATGAAAACTT

hide sequence

RefSeq Acc Id:

XM_005330532 ⟹ XP_005330589

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	177,872,678 - 177,964,983 (-)	NCBI
SpeTri2.0	NW_004936569	4,215,513 - 4,307,815 (-)	NCBI

Sequence:

show sequence

ACTCAGTGTCACGACGGGAGGAGACTCTGGCCGCGCTTGCGTTCCCCCCCTCCCTCGCTCGCCG
TGGCGCTCTGAGCCCCCTTTCCAGCGCCCCCAGCTGCGGGGCCGTTCGCCCGGACTCGAACCAA
ACTTTTCCGCCCTGGGTTTGGGATCCTGGATTCTAGGGCCTGCCCGCCCCTTTCCCGGGTTCCA
CCTCGAGCTCTGGACTTGGAGCTAGCAGCCCCCCTCCCCGCGTCTCTCCCTCCTGTCTTTTTGG
GGAGGAGCTCTTCACGCTCCGGAGAGTTCCCGAGGGTCGCCGCGCTAGCGTCTCTGTTTTGCCT
TCACCTGGATATAATTTCCTAGAGAAGCTGCCCCCAGGATGACCACGCTGGCCGGTGCTGTGCC
CAGGATGATGCGGCCCGGCCCGGGGCAGAACTACCCACGCAGCGGGTTCCCGCTAGAAGTATCC
ACTCCCCTCGGCCAGGGCCGAGTCAACCAGCTCGGCGGCGTTTTTATCAACGGCAGGCCGCTGC
CCAACCACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATTCGGCCCTGCGTCATCTC
TCGCCAACTGCGCGTGTCCCACGGCTGCGTCTCTAAGATTCTGTGCAGGTATCAAGAAACAGGC
TCCATCCGTCCAGGTGCCATCGGAGGCAGCAAGCCCAAGGTGACAACGCCTGACGTGGAGAAGA
AAATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGGGACAAATTACT
CAAGGACGCGGTCTGTGATCGAAACACCGTGCCCTCAGTGAGTTCCATCAGCCGCATCCTGAGG
AGTAAATTTGGGAAAGGAGAAGAGGAGGAGGCCGACCTGGAGAGGAAGGAGGCTGAAGAAAGCG
AGAAAAAGGCTAAGCACAGCATCGACGGCATCTTGAGCGAGCGAGCCTCAGCACCTCAATCAGA
CGAAGGCTCTGACATTGACTCCGAACCAGATTTGCCACTGAAGAGGAAACAGCGCAGGAGCCGG
ACCACCTTCACGGCAGAGCAGCTGGAAGAGCTGGAGCGTGCTTTCGAGAGAACCCACTACCCTG
ACATTTACACCAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACTGAGGCCCGAGTGCAGGTCTG
GTTTAGCAATCGCCGTGCAAGATGGAGGAAGCAAGCTGGAGCCAATCAGCTGATGGCTTTCAAC
CATCTCATTCCGGGGGGATTCCCTCCCACTGCCATGCCGACCCTGCCAACATACCAGCTGTCGG
AGACCTCGTACCAGCCCACAGCTATCCCACAAGCCGTGTCGGATCCCAGCAGCACCGTTCACAG
ACCTCAGCCGCTTCCTCCGAGCACCGTACACCAAAGCACTCTTCCTTCGAACCCGGACAGCAGC
TCTGCTTACTGCCTCCCCAGCACCAGGCACGGATTTTCCAGCTATTCAGACAGCTTTGTGCCTC
CGTCGGGGCCCTCCAACCCCATGAACCCCGCCATTGGCAATGGCCTTTCACCTCAGGTAATGGG
ACTCCTGACCAACCATGGCGGGGTACCTCATCAGCCTCAGACCGATTATGCGCTCTCCCCTCTC
ACTGGGGGCCTGGAACCTACGACCACGGTGTCGGCCAGCTGCAGTCAGAGACTAGACCATATGA
AGAGCTTGGACAGTCTGCCAACATCTCAGTCCTACTGTCCACCCACCTATAGCACCACAGGCTA
CAGTATGGACCCTGTCACGGGCTACCAATATGGGCAGTACGGACAAAGTGCCTTTCATTATCTC
AAGCCAGATATTGCATAAACGAACTGTCCACTTGGAGCTAAAACTGGCCCTGCTTCTGGTCTCC
ACAGCCTAGACGTGAAGAGTCTTCTCAGAAAAAAAAAAAAAAAATTCATCCTTTGGGGGAGGTG
GAGGCAAAGAGCAGCAATTGATTTTCTTTCTGCAAAAGTTGGTTTCAGCTTCTTTTGAACAGGA
TGGATGACCGCAGCGGAGAAGATAAGGACCTGGAGCCACAAAAGACTCAAGCGACATTTCAAAA
CAATGGCTCAACCTGACTACAGATCCAAATATCCCAACTCTTTATTGCTGATGATCAAGGAGCT
CAAACATTCCATTCTGTGTGTGTCTGTGTGTTTATCGGAGACTTATGGACTGTTTTGAGCAAGC
AGAATGTTCTAAAGTATATTCGGAGGAAACTCTATAACACGTTTGATGTCGGTGACTTTAAAAC
TGCTCACTTATCGAAGCAGGAAAGGAGGAATCCCTGACTTGTACACACTGGAAATTAATCTAAA
AATAAAGGCCACCATATTTTAGGAAGCTAGACTAGATGTAAAGGACCTCCCGAATAATAAATTA
TTTGTTATCCTATCCTCGTTTAGAATCTAGTTGTCAATAAATGTCCCGGACACGTTTTGCCAAC
AGGATGTGAGATGACAGGAAGAAAAGCTTGTTTTTCTTTTCCGGTGTGGGGAGAGGTGTATGAC
ATTTTTCCAATTCACCTTCATTTGGAAGCCAACCCGGGCAGGGGGAGGGCCCGGCCAAGTGACG
TGCGTCACATACCTGCTTTTCCGTGTGCAATACTGTGTACCTCACAGACACTTTGGCCACGGCC
AGAGTGATAGAAATGAAACCAGAACTATATTTTTGCAGGGGCTTTTATTTTTGCAGCCCGGAAT
TCATTGTGGTAGAATGCAGTGATGTTTGCCGTTTGCTGAACAACCCACACCCAGCTTGCTCCTT
TTGATTAGAGACCGTGTCAGAGAATAGTGCTTTTTAAAATGATGACGTTTACATTCTTCTCTTT
TCTATGAAAGGCAGGGCAAGAGCAGAAATGTCCACGTGGCTCTCATGTACTTTTAAATTATACA
ATGATATCCAATATTAAAAGATTATAGGAACCGAGGTTTACATACGTTTATGTGGTGACATTTT
AGAATGTCAATAAAAAATTTTTTTTCTTTTCTTTGAAATGTTAAGAGGAACAAGAAAGGTGGAA
GGCAGTGTTATTTATTTCTTTCTATTCTTGGAATCATGAATGAGGTAGGCACAAATACATTCCT
TTTAGAGTGAAGAACGGTGACTGTAGTGCATTTAGTGAGACGACACTAGGCGTAGAACTGAGGT
TCGTTCCTGCATTGGACAAGGGCGATGGAATGAGAGAACTAGGATCTTTGTGTTGCAGCCTCAG
CCAACAACAAAGTGTTGTAAAAATGTCTTTCATGTAAAAAGTGCAGTAAATATTTACTATTTAT
AATGAATAAACAGTTATGAAAACTT

hide sequence

RefSeq Acc Id:

XM_021730009 ⟹ XP_021585684

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	177,872,678 - 177,964,983 (-)	NCBI
SpeTri2.0	NW_004936569	4,216,572 - 4,307,815 (-)	NCBI

Sequence:

show sequence

ACTCAGTGTCACGACGGGAGGAGACTCTGGCCGCGCTTGCGTTCCCCCCCTCCCTCGCTCGCCG
TGGCGCTCTGAGCCCCCTTTCCAGCGCCCCCAGCTGCGGGGCCGTTCGCCCGGACTCGAACCAA
ACTTTTCCGCCCTGGGTTTGGGATCCTGGATTCTAGGGCCTGCCCGCCCCTTTCCCGGGTTCCA
CCTCGAGCTCTGGACTTGGAGCTAGCAGCCCCCCTCCCCGCGTCTCTCCCTCCTGTCTTTTTGG
GGAGGAGCTCTTCACGCTCCGGAGAGTTCCCGAGGGTCGCCGCGCTAGCGTCTCTGTTTTGCCT
TCACCTGGATATAATTTCCTAGAGAAGCTGCCCCCAGGATGACCACGCTGGCCGGTGCTGTGCC
CAGGATGATGCGGCCCGGCCCGGGGCAGAACTACCCACGCAGCGGGTTCCCGCTAGAAGTATCC
ACTCCCCTCGGCCAGGGCCGAGTCAACCAGCTCGGCGGCGTTTTTATCAACGGCAGGCCGCTGC
CCAACCACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATTCGGCCCTGCGTCATCTC
TCGCCAACTGCGCGTGTCCCACGGCTGCGTCTCTAAGATTCTGTGCAGGTATCAAGAAACAGGC
TCCATCCGTCCAGGTGCCATCGGAGGCAGCAAGCCCAAGCAGGTGACAACGCCTGACGTGGAGA
AGAAAATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGGGACAAATT
ACTCAAGGACGCGGTCTGTGATCGAAACACCGTGCCCTCAGTGAGTTCCATCAGCCGCATCCTG
AGGAGTAAATTTGGGAAAGGAGAAGAGGAGGAGGCCGACCTGGAGAGGAAGGAGGCTGAAGAAA
GCGAGAAAAAGGCTAAGCACAGCATCGACGGCATCTTGAGCGAGCGAGCCTCAGCACCTCAATC
AGACGAAGGCTCTGACATTGACTCCGAACCAGATTTGCCACTGAAGAGGAAACAGCGCAGGAGC
CGGACCACCTTCACGGCAGAGCAGCTGGAAGAGCTGGAGCGTGCTTTCGAGAGAACCCACTACC
CTGACATTTACACCAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACTGAGGCCCGAGTGCAGGT
CTGGTTTAGCAATCGCCGTGCAAGATGGAGGAAGCAAGCTGGAGCCAATCAGCTGATGGCTTTC
AACCATCTCATTCCGGGGGGATTCCCTCCCACTGCCATGCCGACCCTGCCAACATACCAGCTGT
CGGAGACCTCGTACCAGCCCACAGCTATCCCACAAGCCGTGTCGGATCCCAGCAGCACCGTTCA
CAGACCTCAGCCGCTTCCTCCGAGCACCGTACACCAAAGCACTCTTCCTTCGAACCCGGACAGC
AGCTCTGCTTACTGCCTCCCCAGCACCAGGCACGGATTTTCCAGCTATTCAGACAGCTTTGTGC
CTCCGTCGGGGCCCTCCAACCCCATGAACCCCGCCATTGGCAATGGCCTTTCACCTCAGGTAAT
GGGACTCCTGACCAACCATGGCGGGGTACCTCATCAGCCTCAGACCGATTATGCGCTCTCCCCT
CTCACTGGGGGCCTGGAACCTACGACCACGGTGTCGGCCAGCTGCAGTCAGAGACTAGACCATA
TGAAGAGCTTGGACAGTCTGCCAACATCTCAGTCCTACTGTCCACCCACCTATAGCACCACAGG
CTACAGTATGGACCCTGTCACGGGCTACCAATATGGGCAGTACGGACAAAGTGCCTTTCATTAT
CTCAAGCCAGATATTGCTTGGTTTCAGCTTCTTTTGAACAGGATGGATGACCGCAGCGGAGAAG
ATAAGGACCTGGAGCCACAAAAGACTCAAGCGACATTTCAAAACAATGGCTCAACCTGACTACA
GATCCAAATATCCCAACTCTTTATTGCTGATGATCAAGGAGCTCAAACATTCCATTCTGTGTGT
GTCTGTGTGTTTATCGGAGACTTATGGACTGTTTTGAGCAAGCAGAATGTTCTAAAGTATATTC
GGAGGAAACTCTATAACACGTTTGATGTCGGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005330588	(Get FASTA)	NCBI Sequence Viewer
	XP_005330589	(Get FASTA)	NCBI Sequence Viewer
	XP_021585684	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000007751.2
GenBank Protein	KAG3275353	(Get FASTA)	NCBI Sequence Viewer
	KAG3275354	(Get FASTA)	NCBI Sequence Viewer
	KAG3275355	(Get FASTA)	NCBI Sequence Viewer
	KAG3275356	(Get FASTA)	NCBI Sequence Viewer
	KAG3275357	(Get FASTA)	NCBI Sequence Viewer
	KAG3275358	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005330589 ⟸ XM_005330532

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAH
HGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMF
SWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILS
ERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAK
LTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTAIPQAV
SDPSSTVHRPQPLPPSTVHQSTLPSNPDSSSAYCLPSTRHGFSSYSDSFVPPSGPSNPMNPAIG
NGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYC
PPTYSTTGYSMDPVTGYQYGQYGQSAFHYLKPDIA

hide sequence

RefSeq Acc Id:	XP_005330588 ⟸ XM_005330531
- Peptide Label:	isoform X1
- UniProtKB:	I3MC09 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAH HGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGM FSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGIL SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTAIPQA VSDPSSTVHRPQPLPPSTVHQSTLPSNPDSSSAYCLPSTRHGFSSYSDSFVPPSGPSNPMNPAI GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSY CPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLKPDIA hide sequence

RefSeq Acc Id:

XP_021585684 ⟸ XM_021730009

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAH
HGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGM
FSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGIL
SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA
KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTAIPQA
VSDPSSTVHRPQPLPPSTVHQSTLPSNPDSSSAYCLPSTRHGFSSYSDSFVPPSGPSNPMNPAI
GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSY
CPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLKPDIAWFQLLLNRMDDRSGEDKDLEPQKTQATF
QNNGST

hide sequence

Ensembl Acc Id:

ENSSTOP00000007751 ⟸ ENSSTOT00000008646

Protein Domains

Homeobox Paired

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000008650	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000008646.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	PAIRED_DNA-bd_dom	UniProtKB/TrEMBL
	Paired_dom	UniProtKB/TrEMBL
	Pax7_C	UniProtKB/TrEMBL
	PAX_fam	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	Pax3	ENTREZGENE
PANTHER	PAIRED BOX PROTEIN PAX-3	UniProtKB/TrEMBL
	PTHR45636	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	PAX	UniProtKB/TrEMBL
	Pax7	UniProtKB/TrEMBL
PRINTS	PAIREDBOX	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	PAIRED_1	UniProtKB/TrEMBL
	PAIRED_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
	PAX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	I3MC09	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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