SEC14L2 (SEC14 like lipid binding 2) - Rat Genome Database

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Gene: SEC14L2 (SEC14 like lipid binding 2) Sus scrofa
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Symbol: SEC14L2
Name: SEC14 like lipid binding 2
RGD ID: 14257111
Description: ENCODES a protein that exhibits enzyme activator activity (ortholog); transferase activity, transferring alkyl or aryl (other than methyl) groups (ortholog); INVOLVED IN positive regulation of cholesterol biosynthetic process (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: SEC14-like 2; SEC14-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11447,369,663 - 47,391,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,454,593 - 50,475,848 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SEC14L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11447,369,663 - 47,391,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,454,593 - 50,475,848 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEC14L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2230,396,941 - 30,425,303 (+)EnsemblGRCh38hg38GRCh38
GRCh382230,397,018 - 30,425,303 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372230,793,007 - 30,821,291 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,122,933 - 29,149,828 (+)NCBINCBI36hg18NCBI36
Build 342229,117,486 - 29,144,382NCBI
Celera2214,592,619 - 14,620,968 (+)NCBI
Cytogenetic Map22q12.2NCBI
HuRef2213,754,252 - 13,782,494 (+)NCBIHuRef
CHM1_12230,752,095 - 30,780,850 (+)NCBICHM1_1
Sec14l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,047,039 - 4,068,729 (-)NCBIGRCm39mm39
GRCm39 Ensembl114,047,039 - 4,073,415 (-)Ensembl
GRCm38114,097,039 - 4,118,729 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,097,039 - 4,123,415 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,997,042 - 4,018,732 (-)NCBIGRCm37mm9NCBIm37
MGSCv36113,997,042 - 4,018,732 (-)NCBImm8
Celera114,592,969 - 4,615,073 (-)NCBICelera
Cytogenetic Map11A1NCBI
Sec14l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21478,973,805 - 78,998,480 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1478,973,808 - 78,993,788 (-)Ensembl
Rnor_6.01484,335,594 - 84,360,354 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,335,597 - 84,355,528 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,017,259 - 85,041,827 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,728,484 - 84,748,418 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11484,747,628 - 84,767,563 (-)NCBI
Celera1477,884,808 - 77,904,737 (-)NCBICelera
Cytogenetic Map14q21NCBI
Sec14l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,636,709 - 4,660,058 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,637,062 - 4,660,064 (+)NCBIChiLan1.0ChiLan1.0
SEC14L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12229,234,162 - 29,261,937 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,234,162 - 29,261,937 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02211,432,608 - 11,460,973 (+)NCBIMhudiblu_PPA_v0panPan3
LOC477539
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,542,555 - 23,563,579 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,413,626 - 23,433,383 (+)NCBI
ROS_Cfam_1.02623,926,643 - 23,946,387 (+)NCBI
UMICH_Zoey_3.12623,628,117 - 23,647,869 (+)NCBI
UNSW_CanFamBas_1.02623,890,926 - 23,910,663 (+)NCBI
UU_Cfam_GSD_1.02623,951,320 - 23,971,099 (+)NCBI
Sec14l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,457,964 - 116,479,252 (+)NCBI
SpeTri2.0NW_004936904254,979 - 276,267 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC14L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,276,712 - 13,302,737 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,276,913 - 13,305,003 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045112,841,789 - 112,869,976 (-)NCBIVero_WHO_p1.0
Sec14l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247476,719,549 - 6,742,794 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 7 2 3 5 23 2 1
Below cutoff 3 2 2 1

Sequence


Reference Sequences
RefSeq Acc Id: NM_001198918   ⟹   NP_001185847
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,376,871 - 47,389,887 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005670808   ⟹   XP_005670865
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,369,663 - 47,391,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005670810   ⟹   XP_005670867
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,375,686 - 47,391,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005670811   ⟹   XP_005670868
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,375,683 - 47,391,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005670815   ⟹   XP_005670872
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,370,052 - 47,391,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013983047   ⟹   XP_013838501
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,370,391 - 47,391,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021071866   ⟹   XP_020927525
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,375,493 - 47,391,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021071867   ⟹   XP_020927526
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11447,370,100 - 47,391,335 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005670865   ⟸   XM_005670808
- Peptide Label: isoform X1
- UniProtKB: A0A286ZRQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005670872   ⟸   XM_005670815
- Peptide Label: isoform X5
- UniProtKB: F1RFD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020927526   ⟸   XM_021071867
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013838501   ⟸   XM_013983047
- Peptide Label: isoform X5
- UniProtKB: F1RFD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020927525   ⟸   XM_021071866
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005670868   ⟸   XM_005670811
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005670867   ⟸   XM_005670810
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001185847   ⟸   NM_001198918
- UniProtKB: D0G7F2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
CRAL-TRIO   GOLD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010006 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070023112 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000010677 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000020894 UniProtKB/TrEMBL
  ENSSSCP00000031261 UniProtKB/TrEMBL
  ENSSSCP00000034144 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000047139 UniProtKB/TrEMBL
  ENSSSCP00000053481 UniProtKB/TrEMBL
  ENSSSCP00000067432 UniProtKB/TrEMBL
  ENSSSCP00000068282 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070038896 UniProtKB/TrEMBL
  ENSSSCP00070038905 UniProtKB/TrEMBL
  ENSSSCP00070038911 UniProtKB/TrEMBL
  ENSSSCP00070038923 UniProtKB/TrEMBL
  ENSSSCP00070038934 UniProtKB/TrEMBL
  ENSSSCP00070038950 UniProtKB/TrEMBL
  ENSSSCP00070038951 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010963 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000026986 UniProtKB/TrEMBL
  ENSSSCT00000040925 UniProtKB/TrEMBL
  ENSSSCT00000048943 UniProtKB/TrEMBL
  ENSSSCT00000052757 UniProtKB/TrEMBL
  ENSSSCT00000054363 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000069308 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000090321 UniProtKB/TrEMBL
  ENSSSCT00070046119 UniProtKB/TrEMBL
  ENSSSCT00070046127 UniProtKB/TrEMBL
  ENSSSCT00070046133 UniProtKB/TrEMBL
  ENSSSCT00070046145 UniProtKB/TrEMBL
  ENSSSCT00070046158 UniProtKB/TrEMBL
  ENSSSCT00070046177 UniProtKB/TrEMBL
  ENSSSCT00070046178 UniProtKB/TrEMBL
Gene3D-CATH 3.40.525.10 UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
  CRAL/TRIO_N_dom UniProtKB/TrEMBL
  CRAL/TRIO_N_dom_sf UniProtKB/TrEMBL
  GOLD_dom UniProtKB/TrEMBL
  GOLD_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100152451 UniProtKB/TrEMBL
NCBI Gene SEC14L2 ENTREZGENE
Pfam CRAL_TRIO UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
  GOLD UniProtKB/TrEMBL
SMART CRAL_TRIO_N UniProtKB/TrEMBL
  SEC14 UniProtKB/TrEMBL
Superfamily-SCOP SSF101576 UniProtKB/TrEMBL
  SSF46938 UniProtKB/TrEMBL
  SSF52087 UniProtKB/TrEMBL
UniProt A0A286ZIF2_PIG UniProtKB/TrEMBL
  A0A286ZRQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AT58_PIG UniProtKB/TrEMBL
  A0A287BBI9_PIG UniProtKB/TrEMBL
  A0A4X1VB82_PIG UniProtKB/TrEMBL
  A0A4X1VBA2_PIG UniProtKB/TrEMBL
  A0A4X1VBE2_PIG UniProtKB/TrEMBL
  A0A4X1VBF6_PIG UniProtKB/TrEMBL
  A0A4X1VC47_PIG UniProtKB/TrEMBL
  A0A4X1VDN7_PIG UniProtKB/TrEMBL
  A0A4X1VDT7_PIG UniProtKB/TrEMBL
  A0A5G2QR86_PIG UniProtKB/TrEMBL
  A0A5G2R258_PIG UniProtKB/TrEMBL
  D0G7F2 ENTREZGENE, UniProtKB/TrEMBL
  F1RFD0 ENTREZGENE, UniProtKB/TrEMBL
  I3LA28_PIG UniProtKB/TrEMBL