GADD45A (growth arrest and DNA damage inducible alpha) - Rat Genome Database

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Gene: GADD45A (growth arrest and DNA damage inducible alpha) Sus scrofa
Analyze
Symbol: GADD45A
Name: growth arrest and DNA damage inducible alpha
RGD ID: 14249177
Description: ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); INVOLVED IN centrosome cycle (ortholog); G2/M transition of mitotic cell cycle (ortholog); negative regulation of angiogenesis (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Chloracne (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cytoplasm (inferred); nuclear speck (inferred); nucleus (inferred); INTERACTS WITH bis(2-chloroethyl) sulfide
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: growth arrest and DNA damage-inducible protein GADD45 alpha; growth arrest and DNA-damage-inducible protein alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6144,940,697 - 144,944,089 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16144,940,702 - 144,944,089 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:16978188   PMID:26345789   PMID:30032202  


Genomics

Comparative Map Data
GADD45A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6144,940,697 - 144,944,089 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16144,940,702 - 144,944,089 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GADD45A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38167,685,201 - 67,688,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl167,685,201 - 67,688,334 (+)EnsemblGRCh38hg38GRCh38
GRCh37168,150,884 - 68,154,017 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36167,923,471 - 67,926,607 (+)NCBINCBI36Build 36hg18NCBI36
Build 34167,862,903 - 67,866,040NCBI
Celera166,441,746 - 66,444,882 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef166,261,120 - 66,264,281 (+)NCBIHuRef
CHM1_1168,265,339 - 68,268,500 (+)NCBICHM1_1
T2T-CHM13v2.0167,562,720 - 67,565,853 (+)NCBIT2T-CHM13v2.0
Gadd45a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39667,012,080 - 67,014,391 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl667,012,080 - 67,014,441 (-)EnsemblGRCm39 Ensembl
GRCm38667,035,096 - 67,037,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl667,035,096 - 67,037,457 (-)EnsemblGRCm38mm10GRCm38
MGSCv37666,985,090 - 66,987,401 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36666,964,674 - 66,966,985 (-)NCBIMGSCv36mm8
Celera669,156,594 - 69,158,906 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map630.72NCBI
Gadd45a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8497,484,497 - 97,486,799 (-)NCBIGRCr8
mRatBN7.2496,154,789 - 96,157,091 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl496,154,789 - 96,157,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4101,404,229 - 101,406,531 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0497,179,202 - 97,181,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0495,604,320 - 95,606,622 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0497,782,512 - 97,784,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl497,782,512 - 97,784,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04162,568,472 - 162,570,774 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4496,649,941 - 96,652,243 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1496,894,423 - 96,896,724 (-)NCBI
Celera490,851,517 - 90,853,819 (-)NCBICelera
Cytogenetic Map4q31NCBI
Gadd45a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542323,656,458 - 23,658,367 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542323,656,516 - 23,658,367 (-)NCBIChiLan1.0ChiLan1.0
GADD45A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21159,181,009 - 159,184,168 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11158,340,738 - 158,343,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,925,063 - 66,928,222 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1168,880,912 - 68,884,188 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl168,880,912 - 68,884,188 (+)Ensemblpanpan1.1panPan2
GADD45A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1677,393,026 - 77,396,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl677,393,036 - 77,396,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha680,002,561 - 80,006,283 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0677,992,921 - 77,996,356 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl677,992,931 - 77,996,499 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1677,573,227 - 77,576,562 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0677,441,881 - 77,445,351 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0677,928,564 - 77,931,987 (-)NCBIUU_Cfam_GSD_1.0
Gadd45a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505880,488,019 - 80,491,186 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365913,998,340 - 4,001,830 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365913,998,359 - 4,001,491 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GADD45A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12065,422,668 - 65,425,845 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2065,422,451 - 65,425,840 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603352,186,272 - 52,189,568 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gadd45a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474227,727,660 - 27,730,316 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474227,727,801 - 27,730,252 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GADD45A
26 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000046791   ⟹   ENSSSCP00000057700
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6144,940,697 - 144,943,999 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000064872   ⟹   ENSSSCP00000038706
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6144,940,703 - 144,944,033 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000066814   ⟹   ENSSSCP00000061625
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6144,941,439 - 144,944,089 (-)Ensembl
RefSeq Acc Id: NM_001044599   ⟹   NP_001038064
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16144,940,702 - 144,944,089 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001038064   ⟸   NM_001044599
- UniProtKB: Q15B93 (UniProtKB/TrEMBL),   A0A480LWY5 (UniProtKB/TrEMBL),   A0A4X1U6T8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000038706   ⟸   ENSSSCT00000064872
Ensembl Acc Id: ENSSSCP00000061625   ⟸   ENSSSCT00000066814
Ensembl Acc Id: ENSSSCP00000057700   ⟸   ENSSSCT00000046791

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037066 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005025159 UniProtKB/TrEMBL
  ENSSSCG00015066049 UniProtKB/TrEMBL
  ENSSSCG00025017141 UniProtKB/TrEMBL
  ENSSSCG00030011487 UniProtKB/TrEMBL
  ENSSSCG00035070397 UniProtKB/TrEMBL
  ENSSSCG00040049309 UniProtKB/TrEMBL
  ENSSSCG00045021318 UniProtKB/TrEMBL
  ENSSSCG00050044281 UniProtKB/TrEMBL
  ENSSSCG00055026582 UniProtKB/TrEMBL
  ENSSSCG00060075410 UniProtKB/TrEMBL
  ENSSSCG00065022165 UniProtKB/TrEMBL
  ENSSSCG00070014428 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000046791.3 UniProtKB/TrEMBL
  ENSSSCT00000064872.2 UniProtKB/TrEMBL
  ENSSSCT00000066814.1 UniProtKB/TrEMBL
  ENSSSCT00005039897.1 UniProtKB/TrEMBL
  ENSSSCT00015088491.1 UniProtKB/TrEMBL
  ENSSSCT00025023140.1 UniProtKB/TrEMBL
  ENSSSCT00030015767.1 UniProtKB/TrEMBL
  ENSSSCT00035095142.1 UniProtKB/TrEMBL
  ENSSSCT00040066494.1 UniProtKB/TrEMBL
  ENSSSCT00045036414.1 UniProtKB/TrEMBL
  ENSSSCT00050060289.1 UniProtKB/TrEMBL
  ENSSSCT00055052597.1 UniProtKB/TrEMBL
  ENSSSCT00060103265.1 UniProtKB/TrEMBL
  ENSSSCT00065029476.1 UniProtKB/TrEMBL
  ENSSSCT00070028315.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro GADD45 UniProtKB/TrEMBL
  L30e-like UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
KEGG Report ssc:733669 UniProtKB/TrEMBL
NCBI Gene GADD45A ENTREZGENE
PANTHER GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 ALPHA UniProtKB/TrEMBL
  PTHR10411 UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt A0A287A412_PIG UniProtKB/TrEMBL
  A0A287BM47_PIG UniProtKB/TrEMBL
  A0A480LWY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U1L7_PIG UniProtKB/TrEMBL
  A0A4X1U6T8 ENTREZGENE, UniProtKB/TrEMBL
  Q15B93 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2QU19 UniProtKB/TrEMBL
VGNC ID VGNC:88316 ENTREZGENE