Gadd45a (growth arrest and DNA-damage-inducible 45 alpha) - Rat Genome Database

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Gene: Gadd45a (growth arrest and DNA-damage-inducible 45 alpha) Mus musculus
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Symbol: Gadd45a
Name: growth arrest and DNA-damage-inducible 45 alpha
RGD ID: 736689
MGI Page MGI
Description: Enables promoter-specific chromatin binding activity. Involved in negative regulation of angiogenesis; negative regulation of blood vessel endothelial cell migration; and negative regulation of peptidyl-serine phosphorylation of STAT protein. Acts upstream of or within centrosome cycle and regulation of cell cycle. Located in nucleus. Is expressed in several structures, including central nervous system; embryo mesenchyme; heart; hindlimb; and sensory organ. Used to study systemic lupus erythematosus. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA545191; Ddit; DDIT-1; Ddit1; DNA damage-inducible transcript 1 protein; DNA-damage inducible transcript 1; DNA-damage-inducible transcript 1; GADD45; Gadd45alpha; growth arrest and DNA damage-inducible protein GADD45 alpha; growth arrest and DNA-damage-inducible protein GADD45 alpha; growth arrest and DNA-damage-inducible, alpha
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39667,012,080 - 67,014,391 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl667,012,080 - 67,014,441 (-)EnsemblGRCm39 Ensembl
GRCm38667,035,096 - 67,037,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl667,035,096 - 67,037,457 (-)EnsemblGRCm38mm10GRCm38
MGSCv37666,985,090 - 66,987,401 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36666,964,674 - 66,966,985 (-)NCBIMGSCv36mm8
Celera669,156,594 - 69,158,906 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map630.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (EXP)
(+)-schisandrin B  (ISO)
(-)-alpha-phellandrene  (ISO)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (EXP,ISO)
(-)-quinic acid  (ISO)
(1->4)-beta-D-glucan  (EXP)
(1S)-bornane-2,3-dione  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
(S)-colchicine  (ISO)
(S)-naringenin  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1,4-dithiothreitol  (ISO)
1-methylphenanthrene  (ISO)
1-naphthyl isothiocyanate  (EXP,ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
1H-pyrazole  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-diaminotoluene  (EXP)
2,4-dinitrotoluene  (ISO)
2,5-hexanedione  (ISO)
2,6-dichloroindophenol  (ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
2-nitrofluorene  (ISO)
2-nitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4,8-Trimethyl-1H,2H,3H-imidazo[4,5-F]quinoxalin-2-imine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxynon-2-enal  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
4-phenylcoumarin  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-chloro-7-iodoquinolin-8-ol  (ISO)
5-fluorouracil  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
8-Br-cAMP  (ISO)
9,11,13-octadecatrienoic acid  (ISO)
acetylsalicylic acid  (ISO)
acridines  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (EXP,ISO)
alachlor  (ISO)
all-trans-retinoic acid  (ISO)
allyl isothiocyanate  (ISO)
alpha-phellandrene  (ISO)
amiodarone  (ISO)
amitriptyline  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
amphibole asbestos  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP,ISO)
antimycin A  (EXP,ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arotinoid acid  (ISO)
arsenic trichloride  (EXP,ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP,ISO)
asbestos  (ISO)
atrazine  (EXP,ISO)
auraptene  (ISO)
Aurin  (ISO)
bacitracin  (ISO)
Bardoxolone methyl  (ISO)
belinostat  (EXP)
benzene  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzyl isothiocyanate  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
bromobenzene  (ISO)
bromochloroacetic acid  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (EXP)
calcidiol  (ISO)
calcitriol  (ISO)
camptothecin  (ISO)
cannabidiol  (EXP,ISO)
capsaicin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
casticin  (EXP)
cefaloridine  (ISO)
CHIR 99021  (ISO)
chlordecone  (EXP)
chlornitrofen  (ISO)
chloroacetaldehyde  (ISO)
chloroethene  (ISO)
chloroform  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cidofovir anhydrous  (ISO)
ciguatoxin CTX1B  (EXP)
cis-caffeic acid  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
conjugated linoleic acid  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
corn oil  (ISO)
cortisol  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP,ISO)
curcumin  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
cypermethrin  (ISO)
cyproconazole  (EXP)
cytarabine  (ISO)
D-penicillamine  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
demethoxycurcumin  (ISO)
deoxynivalenol  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
Diallyl sulfide  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (EXP)
Dibenz[a,j]acridine  (ISO)
Dibenz[c,h]acridine  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
dichloromethane  (ISO)
diclofenac  (EXP,ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP,ISO)
Diglycolic acid  (ISO)
dihydroartemisinin  (ISO)
dimethyl sulfoxide  (ISO)
dimethylarsinic acid  (EXP,ISO)
dioxygen  (EXP,ISO)
diquat  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
emodin  (EXP)
endosulfan  (EXP,ISO)
Enterolactone  (ISO)
erythromycin estolate  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
ethylbenzene  (ISO)
ethylparaben  (ISO)
etoposide  (ISO)
eugenol  (ISO)
fenamidone  (EXP)
fenofibrate  (ISO)
fenthion  (ISO)
ferric oxide  (ISO)
fluoranthene  (EXP)
flutamide  (EXP,ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
fotemustine  (ISO)
fumonisin B1  (ISO)
furan  (ISO)
furazolidone  (ISO)
furosemide  (ISO)
gefitinib  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
gliotoxin  (ISO)
glyphosate  (ISO)
graphite  (ISO)
hydrogen chloride  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hydroxytyrosol  (ISO)
hydroxyurea  (EXP,ISO)
hypochlorous acid  (EXP)
idarubicin  (EXP)
indole-3-methanol  (ISO)
indometacin  (ISO)
iprodione  (ISO)
irinotecan  (ISO)
iron dichloride  (ISO)
isobutanol  (ISO)
isoniazide  (ISO)
josamycin  (ISO)
kainic acid  (ISO)
ketoconazole  (ISO)
L-1,4-dithiothreitol  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-methionine  (EXP)
Lasiocarpine  (ISO)
lead nitrate  (ISO)
leflunomide  (ISO)
leptomycin B  (ISO)
Licochalcone B  (ISO)
limonene  (ISO)
linalool  (ISO)
lipopolysaccharide  (EXP,ISO)
lupeol  (ISO)
mancozeb  (EXP,ISO)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
MeIQx  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
metacetamol  (EXP)
metformin  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylarsonic acid  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (EXP,ISO)
methylmercury(1+)  (ISO)
methylseleninic acid  (ISO)
methyltestosterone  (ISO)
microcystin-LR  (EXP)
mitomycin C  (ISO)
Mitotane  (ISO)
Monobutylphthalate  (ISO)
monocrotaline  (EXP,ISO)
myristicin  (ISO)
Myrtucommulone A  (EXP)
N(4)-hydroxycytidine  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
naloxone  (ISO)
nefazodone  (ISO)
nickel dichloride  (EXP,ISO)
nimesulide  (ISO)
nitenpyram  (ISO)
nitrofen  (ISO)
Nodularin  (ISO)
Nonidet P-40  (ISO)
nonivamide  (ISO)
Nutlin-3  (ISO)
o-xylene  (ISO)
ochratoxin A  (ISO)
oleanolic acid  (EXP)
oxaliplatin  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
Paraoxon-methyl  (ISO)
paraquat  (EXP,ISO)
parathion-methyl  (ISO)
pentanal  (ISO)
Pentoxifylline  (ISO)
perfluorobutyric acid  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phalloidin  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
phenytoin  (EXP)
PhIP  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pinostrobin  (ISO)
pinosylvin  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
potassium bromate  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
progesterone  (ISO)
promethazine  (ISO)
propanal  (ISO)
Ptaquiloside  (ISO)
pyrazinecarboxamide  (ISO)
pyrethrins  (ISO)
quartz  (ISO)
quercetin  (ISO)
quercitrin  (ISO)
quinomethionate  (ISO)
rac-lactic acid  (ISO)
ranitidine  (ISO)
raspberry ketone  (EXP,ISO)
Rebamipide  (ISO)
resveratrol  (EXP,ISO)
retinyl acetate  (EXP)
riddelliine  (ISO)
rifampicin  (EXP)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
Salinomycin  (ISO)
sarin  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (EXP)
Se-methylselenocysteine  (EXP)
selenium atom  (ISO)
serpentine asbestos  (EXP)
sertraline  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
sodium fluoride  (EXP)
Soman  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP,ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetracycline  (ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
theaflavin  (EXP)
thiabendazole  (ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
thiostrepton  (ISO)
titanium dioxide  (EXP,ISO)
tobramycin  (ISO)
toluene  (ISO)
topotecan  (ISO)
torcetrapib  (ISO)
trans-caffeic acid  (ISO)
trans-pinosylvin  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
uranium atom  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (EXP)
XAV939  (ISO)
zearalenone  (EXP)
zerumbone  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc pyrithione  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal base-excision repair  (IAGP)
abnormal bone marrow cell morphology/development  (IAGP)
abnormal cell nucleus morphology  (IAGP)
abnormal cell physiology  (IAGP)
abnormal centrosome morphology  (IAGP)
abnormal chromosome morphology  (IAGP)
abnormal chromosome number  (IAGP)
abnormal glomerular capillary endothelium morphology  (IAGP)
abnormal lymphopoiesis  (IAGP)
abnormal mitosis  (IAGP)
abnormal T cell activation  (IAGP)
aneuploidy  (IAGP)
decreased basophil cell number  (IAGP)
decreased cellular sensitivity to ultraviolet irradiation  (IAGP)
decreased eosinophil cell number  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased mitotic index  (IAGP)
decreased sensitivity to skin irradiation  (IAGP)
dilated proximal convoluted tubule  (IAGP)
embryonic growth retardation  (IAGP)
exencephaly  (IAGP)
glomerulonephritis  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased anti-histone antibody level  (IAGP)
increased anti-single stranded DNA antibody level  (IAGP)
increased autoantibody level  (IAGP)
increased cell proliferation  (IAGP)
increased fibroblast proliferation  (IAGP)
increased IgG1 level  (IAGP)
increased IgM level  (IAGP)
increased incidence of tumors by ionizing radiation induction  (IAGP)
increased incidence of tumors by UV-induction  (IAGP)
increased inflammatory response  (IAGP)
increased kidney cell proliferation  (IAGP)
increased lung adenocarcinoma incidence  (IAGP)
increased lung adenoma incidence  (IAGP)
increased lung tumor incidence  (IAGP)
increased mesangial cell number  (IAGP)
increased metastatic potential  (IAGP)
increased sensitivity to skin irradiation  (IAGP)
increased T cell number  (IAGP)
increased T cell proliferation  (IAGP)
increased thymocyte number  (IAGP)
increased thymus weight  (IAGP)
increased urine protein level  (IAGP)
mesangial cell interposition  (IAGP)
parturition failure  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. GADD45a is a novel candidate gene in inflammatory lung injury via influences on Akt signaling. Meyer NJ, etal., FASEB J. 2009 May;23(5):1325-37. Epub 2009 Jan 5.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Mice lacking the p53-effector gene Gadd45a develop a lupus-like syndrome. Salvador JM, etal., Immunity 2002 Apr;16(4):499-508.
Additional References at PubMed
PMID:7509226   PMID:8139541   PMID:8226988   PMID:9147650   PMID:10025511   PMID:10087207   PMID:10349636   PMID:10386861   PMID:10464095   PMID:10508513   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:11289119   PMID:11313151   PMID:12124778   PMID:12164919   PMID:12372778   PMID:12466851   PMID:12477932   PMID:12499274   PMID:12748288   PMID:12833139   PMID:14500365  
PMID:14610273   PMID:14627995   PMID:14647429   PMID:15044949   PMID:15123655   PMID:15201996   PMID:15262964   PMID:15328371   PMID:15353598   PMID:15489334   PMID:15653712   PMID:15721278  
PMID:15735649   PMID:15735755   PMID:15744335   PMID:15782199   PMID:15846075   PMID:15917306   PMID:16141072   PMID:16141073   PMID:16141330   PMID:16170381   PMID:16470852   PMID:16597604  
PMID:16636063   PMID:16732331   PMID:16772293   PMID:16774126   PMID:16951155   PMID:17010969   PMID:17371971   PMID:17428471   PMID:17599061   PMID:18202762   PMID:18369439   PMID:18483238  
PMID:18988856   PMID:19151789   PMID:19217408   PMID:19229137   PMID:19796622   PMID:20013826   PMID:20955365   PMID:21093383   PMID:21098706   PMID:21267068   PMID:21471541   PMID:21715315  
PMID:21722948   PMID:21816939   PMID:21843656   PMID:21873635   PMID:21917922   PMID:21931791   PMID:22154935   PMID:22242143   PMID:22307729   PMID:22323595   PMID:22555459   PMID:22560297  
PMID:22692209   PMID:22825327   PMID:22970179   PMID:23329839   PMID:23388825   PMID:23516551   PMID:23536762   PMID:23751077   PMID:23941879   PMID:23969889   PMID:24274029   PMID:24371210  
PMID:24376653   PMID:24474198   PMID:24478334   PMID:24695324   PMID:24940746   PMID:25042397   PMID:25450958   PMID:25561743   PMID:26022109   PMID:26334721   PMID:26428007   PMID:26498248  
PMID:26636486   PMID:26731607   PMID:26816051   PMID:26901150   PMID:26973416   PMID:27358404   PMID:27702986   PMID:28086219   PMID:28844958   PMID:28992291   PMID:29022923   PMID:29305158  
PMID:29884649   PMID:30126922   PMID:30668942   PMID:30858352   PMID:30948457   PMID:31171699   PMID:32719383   PMID:33323382   PMID:33674582   PMID:34128833   PMID:34321999   PMID:34334778  
PMID:35167054   PMID:36442857   PMID:36511343   PMID:37067297   PMID:37421415   PMID:37511062   PMID:37807064  


Genomics

Comparative Map Data
Gadd45a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39667,012,080 - 67,014,391 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl667,012,080 - 67,014,441 (-)EnsemblGRCm39 Ensembl
GRCm38667,035,096 - 67,037,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl667,035,096 - 67,037,457 (-)EnsemblGRCm38mm10GRCm38
MGSCv37666,985,090 - 66,987,401 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36666,964,674 - 66,966,985 (-)NCBIMGSCv36mm8
Celera669,156,594 - 69,158,906 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map630.72NCBI
GADD45A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38167,685,201 - 67,688,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl167,685,201 - 67,688,334 (+)EnsemblGRCh38hg38GRCh38
GRCh37168,150,884 - 68,154,017 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36167,923,471 - 67,926,607 (+)NCBINCBI36Build 36hg18NCBI36
Build 34167,862,903 - 67,866,040NCBI
Celera166,441,746 - 66,444,882 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef166,261,120 - 66,264,281 (+)NCBIHuRef
CHM1_1168,265,339 - 68,268,500 (+)NCBICHM1_1
T2T-CHM13v2.0167,562,720 - 67,565,853 (+)NCBIT2T-CHM13v2.0
Gadd45a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8497,484,497 - 97,486,799 (-)NCBIGRCr8
mRatBN7.2496,154,789 - 96,157,091 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl496,154,789 - 96,157,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4101,404,229 - 101,406,531 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0497,179,202 - 97,181,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0495,604,320 - 95,606,622 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0497,782,512 - 97,784,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl497,782,512 - 97,784,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04162,568,472 - 162,570,774 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4496,649,941 - 96,652,243 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1496,894,423 - 96,896,724 (-)NCBI
Celera490,851,517 - 90,853,819 (-)NCBICelera
Cytogenetic Map4q31NCBI
Gadd45a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542323,656,458 - 23,658,367 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542323,656,516 - 23,658,367 (-)NCBIChiLan1.0ChiLan1.0
GADD45A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21159,181,009 - 159,184,168 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11158,340,738 - 158,343,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,925,063 - 66,928,222 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1168,880,912 - 68,884,188 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl168,880,912 - 68,884,188 (+)Ensemblpanpan1.1panPan2
GADD45A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1677,393,026 - 77,396,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl677,393,036 - 77,396,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha680,002,561 - 80,006,283 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0677,992,921 - 77,996,356 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl677,992,931 - 77,996,499 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1677,573,227 - 77,576,562 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0677,441,881 - 77,445,351 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0677,928,564 - 77,931,987 (-)NCBIUU_Cfam_GSD_1.0
Gadd45a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505880,488,019 - 80,491,186 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365913,998,340 - 4,001,830 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365913,998,359 - 4,001,491 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GADD45A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6144,940,697 - 144,944,089 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16144,940,702 - 144,944,089 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GADD45A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12065,422,668 - 65,425,845 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2065,422,451 - 65,425,840 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603352,186,272 - 52,189,568 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gadd45a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474227,727,660 - 27,730,316 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474227,727,801 - 27,730,252 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gadd45a
71 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:685
Count of miRNA genes:436
Interacting mature miRNAs:506
Transcripts:ENSMUST00000043098, ENSMUST00000126194, ENSMUST00000128617, ENSMUST00000151958, ENSMUST00000155041
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64444280571096451Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse

Markers in Region
U00937  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,035,374 - 67,035,558UniSTSGRCm38
MGSCv37666,985,368 - 66,985,552UniSTSGRCm37
Celera669,156,872 - 69,157,056UniSTS
Cytogenetic Map6C1UniSTS
Whitehead_YAC12 UniSTS
Gadd45a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38667,035,374 - 67,035,601UniSTSGRCm38
MGSCv37666,985,368 - 66,985,595UniSTSGRCm37
Celera669,156,872 - 69,157,099UniSTS
Cytogenetic Map6C1UniSTS
cM Map370.5UniSTS
cM Map6 UniSTS
Gadd45a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C1UniSTS
Gadd45a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000043098   ⟹   ENSMUSP00000044034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,012,080 - 67,014,390 (-)Ensembl
GRCm38.p6 Ensembl667,035,096 - 67,037,406 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,013,355 - 67,014,361 (-)Ensembl
GRCm38.p6 Ensembl667,036,371 - 67,037,377 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,012,563 - 67,014,170 (-)Ensembl
GRCm38.p6 Ensembl667,035,579 - 67,037,186 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,012,443 - 67,014,185 (-)Ensembl
GRCm38.p6 Ensembl667,035,459 - 67,037,201 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155041
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,013,881 - 67,014,441 (-)Ensembl
GRCm38.p6 Ensembl667,036,897 - 67,037,457 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204282   ⟹   ENSMUSP00000145136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,012,450 - 67,014,235 (-)Ensembl
GRCm38.p6 Ensembl667,035,466 - 67,037,251 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204369   ⟹   ENSMUSP00000145432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl667,012,443 - 67,014,348 (-)Ensembl
GRCm38.p6 Ensembl667,035,459 - 67,037,364 (-)Ensembl
RefSeq Acc Id: NM_007836   ⟹   NP_031862
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39667,012,080 - 67,014,391 (-)NCBI
GRCm38667,035,096 - 67,037,407 (-)ENTREZGENE
MGSCv37666,985,090 - 66,987,401 (-)RGD
Celera669,156,594 - 69,158,906 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031862   ⟸   NM_007836
- UniProtKB: P48316 (UniProtKB/Swiss-Prot),   Q3UMH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000145432   ⟸   ENSMUST00000204369
RefSeq Acc Id: ENSMUSP00000145136   ⟸   ENSMUST00000204282
RefSeq Acc Id: ENSMUSP00000044034   ⟸   ENSMUST00000043098
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P48316-F1-model_v2 AlphaFold P48316 1-165 view protein structure

Promoters
RGD ID:6839323
Promoter ID:MM_KWN:46267
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_007836,   OTTMUST00000055991,   OTTMUST00000055992,   OTTMUST00000055993,   OTTMUST00000055994
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36666,987,266 - 66,987,766 (-)MPROMDB
RGD ID:6889912
Promoter ID:EPDNEW_M8407
Type:multiple initiation site
Name:Gadd45a_1
Description:Mus musculus growth arrest and DNA-damage-inducible 45 alpha, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38667,037,406 - 67,037,466EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107799 AgrOrtholog
Ensembl Genes ENSMUSG00000036390 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043098 ENTREZGENE
  ENSMUST00000043098.9 UniProtKB/Swiss-Prot
  ENSMUST00000204282.2 UniProtKB/TrEMBL
  ENSMUST00000204369.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GADD45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L30e-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13197 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107799 ENTREZGENE
NCBI Gene 13197 ENTREZGENE
PANTHER GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10411 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gadd45a PhenoGen
Superfamily-SCOP SSF55315 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SVJ9_MOUSE UniProtKB/TrEMBL
  A0A0N4SW99_MOUSE UniProtKB/TrEMBL
  GA45A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UMH6 ENTREZGENE, UniProtKB/TrEMBL