WNT11 (Wnt family member 11) - Rat Genome Database

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Gene: WNT11 (Wnt family member 11) Sus scrofa
Analyze
Symbol: WNT11
Name: Wnt family member 11
RGD ID: 14243631
Description: ENCODES a protein that exhibits protein kinase activator activity (inferred); signaling receptor binding (inferred); INVOLVED IN cell differentiation (ortholog); response to nutrient levels (ortholog); PARTICIPATES IN the Wnt/calcium signaling pathway; Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Abnormalities, Drug-Induced (ortholog); Animal Disease Models (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cytoplasm (inferred); extracellular matrix (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Wnt-11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,413,263 - 10,435,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1910,413,182 - 10,435,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2911,487,189 - 11,509,672 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WNT11Pigoral squamous cell carcinoma susceptibilityISOWNT11 (Homo sapiens)9068941DNA:SNP:exon: A>G (rs1533767) (human)RGDPMID:21393552 and REF_RGD_ID:150530486
WNT11PigProstatic Neoplasms disease_progressionISOWNT11 (Homo sapiens)9068941mRNA:increased expression:tumor:increased expression in 4/4 cases with Gleason sum score >= 7 and also in progression from androgen-dependence to androgen-independence in xenograftsRGDPMID:15520198 and REF_RGD_ID:2299946
WNT11Pigrenal cell carcinoma  ISOWNT11 (Homo sapiens)9068941mRNA:increased expression:tumor:increased in a single caseRGDPMID:11712081 and REF_RGD_ID:2299947
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WNT11Pigbladder exstrophy-epispadias-cloacal exstrophy complex  ISOWNT11 (Homo sapiens)8554872ClinVar Annotator: match by term: Bladder exstrophy-epispadias-cloacal exstrophy complexClinVarPMID:25741868
WNT11Pighypospadias  ISOWNT11 (Homo sapiens)8554872ClinVar Annotator: match by term: HypospadiasClinVarPMID:25741868
WNT11Pigintellectual disability  ISOWNT11 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WNT11PigAbnormalities, Drug-Induced  ISOWNT11 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25783350
WNT11PigAnimal Disease Models  ISOWNT11 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25783350
WNT11Pigcongenital diaphragmatic hernia  ISOWNT11 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25783350


Biological Process
1 to 20 of 51 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WNT11Pigadrenal gland development involved_inIEAUniProtKB:O96014 and ensembl:ENSP00000325526150520179 EnsemblGO_REF:0000107
WNT11Pigapoptotic process acts_upstream_ofIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigartery morphogenesis acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigatrial septum development involved_inIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigbicellular tight junction assembly acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigbone mineralization acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigcanonical Wnt signaling pathway acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigcanonical Wnt signaling pathway involved_inIBAFB:FBgn0004360 more ...150520179 GO_CentralGO_REF:0000033
WNT11Pigcell differentiation  ISOWnt11 (Rattus norvegicus)9068941 RGDPMID:16909041 and REF_RGD_ID:2317898
WNT11Pigcell fate commitment involved_inIBAFB:FBgn0284084 more ...150520179 GO_CentralGO_REF:0000033
WNT11Pigcellular response to mechanical stimulus acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigcloacal septation involved_inIEAUniProtKB:O96014 and ensembl:ENSP00000325526150520179 EnsemblGO_REF:0000107
WNT11Pigconvergent extension involved in axis elongation acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigembryonic skeletal system development involved_inIEAUniProtKB:O96014 and ensembl:ENSP00000325526150520179 EnsemblGO_REF:0000107
WNT11Pigepithelial cell apoptotic process acts_upstream_ofIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigepithelial to mesenchymal transition acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigintracellular signal transduction involved_inIEAUniProtKB:O96014 and ensembl:ENSP00000325526150520179 EnsemblGO_REF:0000107
WNT11Pigkidney development acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Piglung-associated mesenchyme development involved_inIEAUniProtKB:O96014 and ensembl:ENSP00000325526150520179 EnsemblGO_REF:0000107
WNT11Pigmaintenance of epithelial cell apical/basal polarity acts_upstream_of_or_withinIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
1 to 20 of 51 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WNT11Pigcytoplasm located_inIEAUniProtKB:O96014 and ensembl:ENSP00000325526150520179 EnsemblGO_REF:0000107
WNT11Pigextracellular matrix located_inIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
WNT11Pigextracellular region located_inIEAUniProtKB:P48615 and ensembl:ENSMUSP00000064333150520179 EnsemblGO_REF:0000107
WNT11Pigextracellular region located_inIEAInterPro:IPR005817150520179 InterProGO_REF:0000002
WNT11Pigextracellular space is_active_inIBAFB:FBgn0284084 more ...150520179 GO_CentralGO_REF:0000033

Molecular Function

  

RGD Manual Annotations


  
PMID:22301074   PMID:30032202  



WNT11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,413,263 - 10,435,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1910,413,182 - 10,435,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2911,487,189 - 11,509,672 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WNT11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381176,186,325 - 76,210,761 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1176,186,325 - 76,210,736 (-)EnsemblGRCh38hg38GRCh38
GRCh371175,897,369 - 75,917,546 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,575,018 - 75,595,222 (-)NCBINCBI36Build 36hg18NCBI36
Build 341175,575,017 - 75,595,222NCBI
Celera1173,205,187 - 73,225,391 (-)NCBICelera
Cytogenetic Map11q13.5NCBI
HuRef1172,194,546 - 72,214,753 (-)NCBIHuRef
CHM1_11175,780,888 - 75,801,091 (-)NCBICHM1_1
T2T-CHM13v2.01176,116,041 - 76,140,519 (-)NCBIT2T-CHM13v2.0
Wnt11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39798,484,293 - 98,503,954 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl798,484,319 - 98,504,402 (+)EnsemblGRCm39 Ensembl
GRCm38798,835,084 - 98,854,747 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,835,112 - 98,855,195 (+)EnsemblGRCm38mm10GRCm38
MGSCv377105,987,355 - 106,003,257 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36798,714,037 - 98,728,940 (+)NCBIMGSCv36mm8
Celera799,160,445 - 99,176,286 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.9NCBI
Wnt11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81162,545,660 - 162,565,456 (+)NCBIGRCr8
mRatBN7.21153,134,503 - 153,154,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1153,138,197 - 153,154,294 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1161,133,836 - 161,149,936 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,314,007 - 168,330,107 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01161,187,522 - 161,203,622 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01163,794,136 - 163,813,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1163,797,660 - 163,813,756 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,997,286 - 170,016,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,125,969 - 156,142,065 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11156,213,816 - 156,216,652 (+)NCBI
Celera1151,224,671 - 151,240,729 (+)NCBICelera
Cytogenetic Map1q32NCBI
Wnt11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541415,674,940 - 15,694,883 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541415,674,478 - 15,694,758 (+)NCBIChiLan1.0ChiLan1.0
WNT11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2977,110,987 - 77,161,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,156,064 - 78,180,195 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01171,239,781 - 71,263,915 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11174,540,025 - 74,560,024 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1174,540,169 - 74,560,024 (-)Ensemblpanpan1.1panPan2
WNT11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12122,442,496 - 22,463,040 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2122,446,051 - 22,463,173 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2122,210,200 - 22,227,251 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02122,648,822 - 22,665,821 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2122,648,814 - 22,665,904 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12122,423,226 - 22,440,217 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02122,642,741 - 22,659,738 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02122,561,731 - 22,578,745 (+)NCBIUU_Cfam_GSD_1.0
Wnt11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,309,313 - 63,329,371 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364984,908,978 - 4,927,165 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364984,909,041 - 4,927,482 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,393,975 - 67,427,247 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,399,074 - 67,418,509 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604358,377,747 - 58,402,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624817932,970 - 952,326 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624817931,686 - 952,474 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in WNT11
671 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 4 13 3 5 14 12 13 3 5 1



Ensembl Acc Id: ENSSSCT00000024218   ⟹   ENSSSCP00000019221
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl910,413,263 - 10,431,405 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000025742   ⟹   ENSSSCP00000024313
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl910,413,263 - 10,432,383 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000073379   ⟹   ENSSSCP00000070221
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl910,413,263 - 10,435,100 (-)Ensembl
RefSeq Acc Id: XM_005667138   ⟹   XP_005667195
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1910,413,182 - 10,435,158 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013979148   ⟹   XP_013834602
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1910,413,182 - 10,434,400 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013979149   ⟹   XP_013834603
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1910,413,182 - 10,434,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021062532   ⟹   XP_020918191
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1910,413,182 - 10,433,499 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005667195   ⟸   XM_005667138
- UniProtKB: A0A8D1MKJ5 (UniProtKB/TrEMBL),   A0A5G2QZA2 (UniProtKB/TrEMBL),   A0A4X1UK22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013834603   ⟸   XM_013979149
- UniProtKB: A0A8D1MKJ5 (UniProtKB/TrEMBL),   A0A5G2QZA2 (UniProtKB/TrEMBL),   A0A4X1UK22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013834602   ⟸   XM_013979148
- UniProtKB: A0A8D1MKJ5 (UniProtKB/TrEMBL),   A0A5G2QZA2 (UniProtKB/TrEMBL),   A0A4X1UK22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918191   ⟸   XM_021062532
- UniProtKB: A0A8D1MKJ5 (UniProtKB/TrEMBL),   A0A5G2QZA2 (UniProtKB/TrEMBL),   A0A4X1UK22 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000024313   ⟸   ENSSSCT00000025742



1 to 40 of 41 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000022347 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025067126 UniProtKB/TrEMBL
  ENSSSCG00030074589 UniProtKB/TrEMBL
  ENSSSCG00035007177 UniProtKB/TrEMBL
  ENSSSCG00040066161 UniProtKB/TrEMBL
  ENSSSCG00045020526 UniProtKB/TrEMBL
  ENSSSCG00050044287 UniProtKB/TrEMBL
  ENSSSCG00060027602 UniProtKB/TrEMBL
  ENSSSCG00065062415 UniProtKB/TrEMBL
  ENSSSCG00070017401 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000073379 ENTREZGENE
  ENSSSCT00000073379.2 UniProtKB/TrEMBL
  ENSSSCT00025092212.1 UniProtKB/TrEMBL
  ENSSSCT00030104713.1 UniProtKB/TrEMBL
  ENSSSCT00035008909.1 UniProtKB/TrEMBL
  ENSSSCT00035008914.1 UniProtKB/TrEMBL
  ENSSSCT00035008916.1 UniProtKB/TrEMBL
  ENSSSCT00040090365.1 UniProtKB/TrEMBL
  ENSSSCT00045035024.1 UniProtKB/TrEMBL
  ENSSSCT00050060290.1 UniProtKB/TrEMBL
  ENSSSCT00060037363.1 UniProtKB/TrEMBL
  ENSSSCT00065085623.1 UniProtKB/TrEMBL
  ENSSSCT00070034352.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro Wnt UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_CS UniProtKB/TrEMBL
KEGG Report ssc:100521912 UniProtKB/TrEMBL
NCBI Gene WNT11 ENTREZGENE
PANTHER PTHR12027 UniProtKB/TrEMBL
  PTHR12027:SF7 UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PRINTS WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt A0A4X1UK22 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QZA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YKZ6_PIG UniProtKB/TrEMBL
  A0A8D1CKU3_PIG UniProtKB/TrEMBL
  A0A8D1MKJ5 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 41 rows