FABP2 (fatty acid binding protein 2) - Rat Genome Database

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Gene: FABP2 (fatty acid binding protein 2) Sus scrofa
Analyze
Symbol: FABP2
Name: fatty acid binding protein 2
RGD ID: 14107465
Description: ENCODES a protein that exhibits fatty acid binding (ortholog); long-chain fatty acid transmembrane transporter activity (ortholog); INVOLVED IN fatty acid metabolic process (ortholog); fatty acid transport (ortholog); intestinal absorption (ortholog); ASSOCIATED WITH alcoholic liver cirrhosis (ortholog); carotid stenosis (ortholog); coronary artery disease (ortholog); FOUND IN apical cortex (ortholog); microvillus (ortholog); INTERACTS WITH glutathione; paraquat
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: fatty acid-binding protein, intestinal; I-FABP; intestinal fatty acid binding protein; intestinal-type fatty acid-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8104,464,342 - 104,470,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18104,464,342 - 104,468,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,120,922 - 112,124,639 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
glutathione  (EXP)
paraquat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
apical cortex  (ISO)
cytoplasm  (IEA)
cytosol  (IBA)
microvillus  (ISO)
nucleus  (IBA)

Molecular Function

References
Additional References at PubMed
PMID:16529296   PMID:18708596   PMID:19207930   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FABP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8104,464,342 - 104,470,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18104,464,342 - 104,468,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,120,922 - 112,124,639 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FABP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384119,317,250 - 119,322,138 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4119,317,250 - 119,322,138 (-)EnsemblGRCh38hg38GRCh38
GRCh374120,238,405 - 120,243,293 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364120,457,853 - 120,462,766 (-)NCBINCBI36Build 36hg18NCBI36
Build 344120,596,008 - 120,600,921NCBI
Celera4117,600,001 - 117,604,911 (-)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4115,960,235 - 115,965,143 (-)NCBIHuRef
CHM1_14120,214,972 - 120,219,883 (-)NCBICHM1_1
T2T-CHM13v2.04122,622,352 - 122,627,246 (-)NCBIT2T-CHM13v2.0
Fabp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393122,688,721 - 122,693,155 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3122,688,721 - 122,693,155 (+)EnsemblGRCm39 Ensembl
GRCm383122,895,072 - 122,899,506 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3122,895,072 - 122,899,506 (+)EnsemblGRCm38mm10GRCm38
MGSCv373122,598,310 - 122,602,424 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363122,887,414 - 122,891,528 (+)NCBIMGSCv36mm8
Celera3129,305,754 - 129,309,868 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map353.74NCBI
Fabp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82213,724,629 - 213,728,686 (+)NCBIGRCr8
mRatBN7.22211,040,032 - 211,044,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2211,040,032 - 211,044,089 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2218,717,756 - 218,721,725 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02216,625,543 - 216,629,512 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02211,471,755 - 211,475,828 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02227,080,912 - 227,083,654 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,080,924 - 227,083,501 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,442,292 - 246,445,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,591,502 - 219,605,097 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12219,554,563 - 219,568,159 (+)NCBI
Celera2203,465,826 - 203,473,400 (+)NCBICelera
RH 3.4 Map21537.1RGD
Cytogenetic Map2q42NCBI
Fabp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542820,930,479 - 20,933,950 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542820,930,512 - 20,933,950 (+)NCBIChiLan1.0ChiLan1.0
FABP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23117,095,776 - 117,098,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14117,388,095 - 117,395,765 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04111,505,269 - 111,510,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14122,055,544 - 122,060,461 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4122,055,544 - 122,060,461 (-)Ensemblpanpan1.1panPan2
FABP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13238,244,065 - 38,248,093 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03238,465,352 - 38,497,153 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3238,465,346 - 38,492,684 (-)EnsemblROS_Cfam_1.0 Ensembl
Fabp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530167,281,463 - 67,284,661 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936869146,844 - 149,902 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936869146,567 - 149,929 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1766,797,832 - 66,803,459 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl766,798,990 - 66,802,738 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603745,658,385 - 45,663,315 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in FABP2
78 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 2 23 3 2 5 12 10 23 3 5 3

Sequence


Ensembl Acc Id: ENSSSCT00000040297   ⟹   ENSSSCP00000040315
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8104,464,342 - 104,470,480 (+)Ensembl
RefSeq Acc Id: NM_001031780   ⟹   NP_001026950
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18104,464,342 - 104,468,059 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001026950   ⟸   NM_001031780
- UniProtKB: Q56G53 (UniProtKB/Swiss-Prot),   Q45KW7 (UniProtKB/Swiss-Prot),   A8W348 (UniProtKB/TrEMBL),   A0A8D0JNK7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000040315   ⟸   ENSSSCT00000040297
Protein Domains
Cytosolic fatty-acid binding proteins   Lipocalin/cytosolic fatty-acid binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037272 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00005031392 UniProtKB/TrEMBL
  ENSSSCG00015035376 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025072440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030000197 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035044137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040054179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045009670 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050038128 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055014467 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060050880 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065016241 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070022309 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040297 ENTREZGENE
  ENSSSCT00000040297.2 UniProtKB/Swiss-Prot
  ENSSSCT00005050075.1 UniProtKB/TrEMBL
  ENSSSCT00015046888.1 UniProtKB/TrEMBL
  ENSSSCT00015047140.1 UniProtKB/Swiss-Prot
  ENSSSCT00025099584.1 UniProtKB/Swiss-Prot
  ENSSSCT00025099656.1 UniProtKB/TrEMBL
  ENSSSCT00030000310.1 UniProtKB/Swiss-Prot
  ENSSSCT00030000311.1 UniProtKB/TrEMBL
  ENSSSCT00035058651.1 UniProtKB/Swiss-Prot
  ENSSSCT00035058660.1 UniProtKB/TrEMBL
  ENSSSCT00040073306.1 UniProtKB/TrEMBL
  ENSSSCT00040073465.1 UniProtKB/Swiss-Prot
  ENSSSCT00045016391.1 UniProtKB/TrEMBL
  ENSSSCT00045016426.1 UniProtKB/Swiss-Prot
  ENSSSCT00050051410.1 UniProtKB/Swiss-Prot
  ENSSSCT00050051419.1 UniProtKB/TrEMBL
  ENSSSCT00055028547.1 UniProtKB/Swiss-Prot
  ENSSSCT00055028597.1 UniProtKB/TrEMBL
  ENSSSCT00060069225.1 UniProtKB/Swiss-Prot
  ENSSSCT00060069229.1 UniProtKB/TrEMBL
  ENSSSCT00065021537.1 UniProtKB/Swiss-Prot
  ENSSSCT00065021542.1 UniProtKB/TrEMBL
  ENSSSCT00070044357.1 UniProtKB/Swiss-Prot
  ENSSSCT00070044361.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calycin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FABP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ILBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:595106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene FABP2 ENTREZGENE
PANTHER PTHR11955 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11955:SF89 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1V3R8_PIG UniProtKB/TrEMBL
  A0A8D0JNK7 ENTREZGENE, UniProtKB/TrEMBL
  A8W348 ENTREZGENE, UniProtKB/TrEMBL
  FABPI_PIG UniProtKB/Swiss-Prot, ENTREZGENE
  Q56G53 ENTREZGENE
UniProt Secondary Q56G53 UniProtKB/Swiss-Prot
VGNC ID VGNC:87871 ENTREZGENE