FABP2 (fatty acid binding protein 2) - Rat Genome Database

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Gene: FABP2 (fatty acid binding protein 2) Homo sapiens
Analyze
Symbol: FABP2
Name: fatty acid binding protein 2
RGD ID: 735842
HGNC Page HGNC:3556
Description: Enables long-chain fatty acid binding activity. Involved in intestinal lipid absorption. Predicted to be located in apical cortex and microvillus. Predicted to be active in cytosol and nucleus. Implicated in alcoholic liver cirrhosis; carotid stenosis; coronary artery disease; end stage renal disease; and obesity.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FABPI; fatty acid binding protein 1; fatty acid binding protein 2, intestinal; fatty acid-binding protein 2; fatty acid-binding protein, intestinal; I-FABP; intestinal-type fatty acid-binding protein; MGC133132
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Is Marker For: QTLs:   BW127_H  
Candidate Gene For: BW441_H
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384119,317,250 - 119,322,138 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4119,317,250 - 119,322,138 (-)EnsemblGRCh38hg38GRCh38
GRCh374120,238,405 - 120,243,293 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364120,457,853 - 120,462,766 (-)NCBINCBI36Build 36hg18NCBI36
Build 344120,596,008 - 120,600,921NCBI
Celera4117,600,001 - 117,604,911 (-)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4115,960,235 - 115,965,143 (-)NCBIHuRef
CHM1_14120,214,972 - 120,219,883 (-)NCBICHM1_1
T2T-CHM13v2.04122,622,352 - 122,627,246 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
FABP2Humanalcoholic liver cirrhosis onsetIAGP 1578455DNA:polymorphism:CDS:amino acid A54T, homozygosity of the T allele associated with later onsetRGD 
FABP2Humancarotid stenosis  IAGP 1582392 RGD 
FABP2Humancoronary artery disease  IAGP 1626412DNA:SNP:CDS:2445G>A, amino acid A54T, associated with Diabetes Mellitus, Type 2 (MeSH:D003924) in womenRGD 
FABP2HumanDiabetic Nephropathies  IAGP 1578457DNA:polymorphism:CDS:amino acid A54T, in a Brazilian populationRGD 
FABP2Humanend stage renal disease  IAGP 1578457DNA:polymorphism:CDS:amino acid A54T, associated with Diabetes Mellitus, Type 2 (MeSH:D003924)RGD 
FABP2HumanExperimental Diabetes Mellitus treatmentISORGD:2591598130069 RGD 
FABP2HumanHypertriglyceridemia  IAGP 1626401DNA:polymorphism:CDS:amino acid A54T, in a normal glucose tolerant population from urban south IndiaRGD 
FABP2HumanHypertriglyceridemia  IAGP 1300313associated with Diabetes Mellitus, Type 2;DNA:missense mutation:cds:p.A54T (human)RGD 
FABP2HumanInsulin Resistance  IAGP 1578456DNA:polymorphism:CDS:amino acid A54T, in healthy, moderately overweight subjects in Baton RougeRGD 
FABP2HumanInsulin Resistance no_associationIAGP 1626407DNA:polymorphism:CDS:amino acid A54T, in Chilean Aymara and Mapuche ethnic groupsRGD 
FABP2HumanInsulin Resistance  IAGP 1300314DNA:SNP:CDS:p.A54T (human)RGD 
FABP2HumanInsulin Resistance  IAGP 1626400DNA:polymorphism:CDS:p.A54T (human)RGD 
FABP2HumanMetabolic Syndrome  IAGP 1626401DNA:polymorphism:CDS:amino acid A54T, in a normal glucose tolerant population from urban south IndiaRGD 
FABP2Humanobesity no_associationIAGP 1626407DNA:polymorphism:CDS:amino acid A54T, in Chilean Aymara and Mapuche ethnic groupsRGD 
FABP2Humanobesity  IAGP 1626400DNA:polymorphism:CDS:p.A54T (human)RGD 
FABP2Humanobesity onsetIAGP 1578458Early onset of obesity and resistance to reducing visceral white adipose tissue; DNA:polymorphism:CDS:amino acid more ...RGD 
FABP2HumanStroke  IAGP 1300312DNA:missense mutation:cds:p.A54T (human)RGD 
FABP2Humantype 2 diabetes mellitus no_associationIAGP 1626401DNA:polymorphism:CDS:amino acid A54T, in a population from urban south IndiaRGD 
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FABP2HumanNeurodevelopmental Disorders  IAGPRGD:146988648554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
FABP2Humantype 2 diabetes mellitus  IAGPRGD:85656668554872ClinVar Annotator: match by term: FABP2 POLYMORPHISMClinVarPMID:10946885|PMID:10999802|PMID:12161503|PMID:14666368|PMID:15572430|PMID:25741868|PMID:7883976|PMID:9253345
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FABP2HumanExperimental Liver Cirrhosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136

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FABP2Human(1->4)-beta-D-glucan multiple interactionsISORGD:105646480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of FABP2 mRNACTDPMID:36331819
FABP2Human1,2-dimethylhydrazine decreases expressionISORGD:1056464804641,2-Dimethylhydrazine results in decreased expression of FABP2 mRNACTDPMID:22206623
FABP2Human1-naphthyl isothiocyanate increases expressionISORGD:259164804641-Naphthylisothiocyanate results in increased expression of FABP2 mRNACTDPMID:25380136|PMID:30723492
FABP2Human17beta-estradiol increases expressionISORGD:25916480464Estradiol results in increased expression of FABP2 mRNACTDPMID:32145629
FABP2Human2,2',4,4'-Tetrabromodiphenyl ether increases expressionISORGD:259164804642,2',4,4'-tetrabromodiphenyl ether results in increased expression of FABP2 mRNACTDPMID:27291303
FABP2Human2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORGD:1056464804642,2',4,4'-tetrabromodiphenyl ether results in decreased expression of FABP2 mRNACTDPMID:38040069
FABP2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:105646480464Tetrachlorodibenzodioxin results in increased expression of FABP2 mRNACTDPMID:19770486
FABP2Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:105646480464Tetrachlorodibenzodioxin results in decreased expression of FABP2 mRNACTDPMID:28238261
FABP2Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:105646480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in increased expression more ...CTDPMID:25975270
FABP2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:105646480464Tetrachlorodibenzodioxin affects the expression of FABP2 mRNACTDPMID:21570461
FABP2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:25916480464Tetrachlorodibenzodioxin results in increased expression of FABP2 mRNACTDPMID:21215274
FABP2Human2,4,6-trinitrobenzenesulfonic acid decreases expressionISORGD:105646480464Trinitrobenzenesulfonic Acid results in decreased expression of FABP2 mRNACTDPMID:17982090
FABP2Human2,4,6-trinitrotoluene affects expressionISORGD:25916480464Trinitrotoluene affects the expression of FABP2 mRNACTDPMID:21346803
FABP2Human2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISORGD:1056464804642,2',4,4',5-brominated diphenyl ether affects the expression of FABP2 mRNACTDPMID:38648751
FABP2Human2,4-dinitrotoluene affects expressionISORGD:259164804642,4-dinitrotoluene affects the expression of FABP2 mRNACTDPMID:21346803
FABP2Human2,4-dinitrotoluene decreases expressionISORGD:1056464804642,4-dinitrotoluene results in decreased expression of FABP2 mRNACTDPMID:24893713
FABP2Human2-palmitoylglycerol increases expressionEXP 64804642-palmitoylglycerol results in increased expression of FABP2 mRNACTDPMID:37199045
FABP2Human4,4'-diaminodiphenylmethane increases expressionISORGD:259164804644,4'-diaminodiphenylmethane results in increased expression of FABP2 mRNACTDPMID:25380136|PMID:30723492
FABP2Human4,4'-diaminodiphenylmethane decreases expressionISORGD:1056464804644,4'-diaminodiphenylmethane results in decreased expression of FABP2 mRNACTDPMID:18648102
FABP2Human4,4'-sulfonyldiphenol affects expressionISORGD:105646480464bisphenol S affects the expression of FABP2 mRNACTDPMID:39298647

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Biological Process
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FABP2Humanfatty acid metabolic process involved_inIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humanfatty acid metabolic process  ISORGD:25919068941 RGDPMID:11729182|REF_RGD_ID:619548
FABP2Humanfatty acid transport  ISORGD:25919068941 RGDPMID:3840724|REF_RGD_ID:728570
FABP2Humanfatty acid transport involved_inIBAMGI:88038|MGI:95476|PANTHER:PTN002278936|RGD:2590|RGD:2591|RGD:69048|UniProtKB:Q01469|WB:WBGene00002260150520179 GO_CentralGO_REF:0000033
FABP2Humanfatty acid transport involved_inIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humanintestinal absorption  ISORGD:25919068941 RGDPMID:10666570|REF_RGD_ID:1582399
FABP2Humanintestinal absorption involved_inIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humanintestinal lipid absorption involved_inIMP 150520179 PMID:7883976GO_CentralPMID:7883976
FABP2Humanlong-chain fatty acid transport involved_inIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humanlong-chain fatty acid transport  ISORGD:25919068941 RGDPMID:16551626|REF_RGD_ID:1582384
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Cellular Component
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FABP2Humanapical cortex  ISORGD:25919068941 RGDPMID:10666570|REF_RGD_ID:1582399
FABP2Humanapical cortex located_inIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
FABP2Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
FABP2Humancytosol located_inTAS 150520179 ReactomeReactome:R-HSA-5334794
FABP2Humancytosol is_active_inIBAMGI:101790|MGI:97877|PANTHER:PTN002278936|UniProtKB:P07148|UniProtKB:P09455|UniProtKB:P29373|UniProtKB:P40220150520179 GO_CentralGO_REF:0000033
FABP2Humanmicrovillus  ISORGD:25919068941 RGDPMID:10666570|REF_RGD_ID:1582399
FABP2Humanmicrovillus located_inIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humannucleus is_active_inIBAMGI:101790|MGI:88038|MGI:88491|MGI:95479|PANTHER:PTN002278936|UniProtKB:P07148|UniProtKB:P09455|UniProtKB:P29373|UniProtKB:Q01469|WB:WBGene00002257|WB:WBGene00002260150520179 GO_CentralGO_REF:0000033
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Molecular Function
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FABP2Humanfatty acid binding  ISOCHEBI:157569068941 RGDPMID:10666570|REF_RGD_ID:1582399
FABP2Humanfatty acid binding enablesTAS 150520179 PMID:2824476PINCPMID:2824476
FABP2Humanfatty acid binding enablesIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humanfatty acid binding enablesIEAInterPro:IPR031272150520179 InterProGO_REF:0000002
FABP2Humanfatty acid binding  ISOCHEBI:161969068941 RGDPMID:10666570|REF_RGD_ID:1582399
FABP2Humanfatty acid binding  ISORGD:25919068941 RGDPMID:16551626|REF_RGD_ID:1582384
FABP2Humanlipid binding enablesIEAUniProtKB-KW:KW-0446150520179 UniProtGO_REF:0000043
FABP2Humanlipid binding enablesIEAInterPro:IPR000463|InterPro:IPR031259150520179 InterProGO_REF:0000002
FABP2Humanlong-chain fatty acid binding enablesIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humanlong-chain fatty acid binding enablesIBAPANTHER:PTN002632648|RGD:2591|UniProtKB:P12104150520179 GO_CentralGO_REF:0000033
FABP2Humanlong-chain fatty acid binding enablesIDA 150520179 PMID:7883976GO_CentralPMID:7883976
FABP2Humanlong-chain fatty acid transmembrane transporter activity  ISORGD:25919068941 RGDPMID:16551626|REF_RGD_ID:1582384
FABP2Humanlong-chain fatty acid transmembrane transporter activity enablesIEAUniProtKB:P02693|ensembl:ENSRNOP00000093186150520179 EnsemblGO_REF:0000107
FABP2Humanprotein binding enablesIPIUniProtKB:O95994150520179 PMID:25416956, PMID:25910212IntActPMID:25416956|PMID:25910212
FABP2Humanprotein binding enablesIPIUniProtKB:Q9NYB0150520179 PMID:21044950IntActPMID:21044950
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Original Reference(s)
FABP2HumanAbnormal circulating leptin concentration  IAGP 1626400DNA:polymorphism:CDS:p.A54TRGD 
FABP2HumanAbnormality of tumor necrosis factor secretion  IAGP 1626400DNA:polymorphism:CDS:p.A54TRGD 
FABP2HumanFasting hyperinsulinemia no_associationIAGP 1626414DNA:SNP:CDS:amino acid A54T, no association with obesity- or insulin resistance-related phenotypes in a Japanese populationRGD 
FABP2HumanFasting hyperinsulinemia  IAGP 1626400DNA:polymorphism:CDS:p.A54TRGD 
FABP2HumanHyperglycemia  IAGP 1626413DNA:SNP:CDS:A54T, slight but significant increase in fasting plasma glucose level associated with homozygous TT genotype more ...RGD 
FABP2HumanIncreased body weight no_associationIAGP 1626414DNA:SNP:CDS:amino acid A54T, no association with obesity- or insulin resistance-related phenotypes in a Japanese populationRGD 

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Reference Title
Reference Citation
1. Intestinal FABP2 A54T polymorphism: association with insulin resistance and obesity in women. Albala C, etal., Obes Res. 2004 Feb;12(2):340-5.
2. An amino acid substitution in the human intestinal fatty acid binding protein is associated with increased fatty acid binding, increased fat oxidation, and insulin resistance. Baier LJ, etal., J Clin Invest 1995 Mar;95(3):1281-7.
3. The fatty acid-binding protein-2 A54T polymorphism is associated with renal disease in patients with type 2 diabetes. Canani LH, etal., Diabetes. 2005 Nov;54(11):3326-30.
4. The T 54 allele of the intestinal fatty acid-binding protein 2 is associated with a parental history of stroke. Carlsson M, etal., J Clin Endocrinol Metab 2000 Aug;85(8):2801-4.
5. Codon-54 polymorphism of the fatty acid-binding protein 2 gene is associated with elevation of fasting and postprandial triglyceride in type 2 diabetes. Georgopoulos A, etal., J Clin Endocrinol Metab 2000 Sep;85(9):3155-60.
6. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
7. Variation of the fatty acid binding protein 2 gene is not associated with obesity and insulin resistance in Japanese subjects. Hayakawa T, etal., Metabolism. 1999 May;48(5):655-7.
8. Effects of intestinal fatty acid-binding protein gene Ala54Thr polymorphism and beta3-adrenergic receptor gene Trp64Arg polymorphism on insulin resistance and fasting plasma glucose in young to older Japanese men. Ishii T, etal., Metabolism. 2001 Nov;50(11):1301-7.
9. Comparison of the acute response to meals enriched with cis- or trans-fatty acids on glucose and lipids in overweight individuals with differing FABP2 genotypes. Lefevre M, etal., Metabolism. 2005 Dec;54(12):1652-8.
10. Antidiabetic, Lipid Normalizing, and Nephroprotective Actions of the Strawberry: A Potent Supplementary Fruit. Mandave P, etal., Int J Mol Sci. 2017 Jan 11;18(1):124. doi: 10.3390/ijms18010124.
11. Lack of association between the fatty acid binding protein 2 (FABP2) polymorphism with obesity and insulin resistance in two aboriginal populations from Chile. Perez-Bravo F, etal., Acta Diabetol. 2006 Dec;43(4):93-8.
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. The role of FABP2 gene polymorphism in alcoholic cirrhosis. Salguero ML, etal., Hepatol Res. 2005 Nov 8;.
15. Thr54 allele of the FABP2 gene affects resting metabolic rate and visceral obesity. Takakura Y, etal., Diabetes Res Clin Pract. 2005 Jan;67(1):36-42.
16. Thr54 allele carriers of the Ala54Thr variant of FABP2 gene have associations with metabolic syndrome and hypertriglyceridemia in urban South Indians. Vimaleswaran KS, etal., Metabolism. 2006 Sep;55(9):1222-6.
17. Genetic variation of the intestinal fatty acid-binding protein 2 gene in carotid atherosclerosis. Wanby P, etal., Vasc Med. 2005 May;10(2):103-8.
18. Genetic risk for coronary artery disease in individuals with or without type 2 diabetes. Yamada Y, etal., Mol Genet Metab. 2004 Apr;81(4):282-90.
19. Effect of Creosote Bush-Derived NDGA on Expression of Genes Involved in Lipid Metabolism in Liver of High-Fructose Fed Rats: Relevance to NDGA Amelioration of Hypertriglyceridemia and Hepatic Steatosis. Zhang H, etal., PLoS One. 2015 Sep 22;10(9):e0138203. doi: 10.1371/journal.pone.0138203. eCollection 2015.
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PMID:1740333   PMID:2193826   PMID:2263509   PMID:2824476   PMID:3838313   PMID:8401509   PMID:8454101   PMID:8954037   PMID:9204553   PMID:9250601   PMID:9806794   PMID:10070036  
PMID:10856711   PMID:11288045   PMID:11299043   PMID:11385507   PMID:11423496   PMID:11555846   PMID:11606480   PMID:11707533   PMID:11730822   PMID:11866034   PMID:12079887   PMID:12161503  
PMID:12189904   PMID:12370850   PMID:12377750   PMID:12477932   PMID:12634920   PMID:12691171   PMID:12809489   PMID:12855223   PMID:12899384   PMID:14563446   PMID:14567680   PMID:14605999  
PMID:14650352   PMID:14666368   PMID:14686962   PMID:15135251   PMID:15135268   PMID:15159243   PMID:15177133   PMID:15489334   PMID:15527447   PMID:15547295   PMID:15572430   PMID:15598690  
PMID:15764642   PMID:15776585   PMID:15869758   PMID:16002819   PMID:16276364   PMID:16679929   PMID:16718625   PMID:16718632   PMID:16733910   PMID:16809903   PMID:16908951   PMID:16945373  
PMID:17143557   PMID:17207965   PMID:17209184   PMID:17212611   PMID:17292994   PMID:17310796   PMID:17343826   PMID:17383953   PMID:17428383   PMID:17447159   PMID:17512303   PMID:17594477  
PMID:17605029   PMID:17633563   PMID:17684408   PMID:17907115   PMID:17914506   PMID:17921407   PMID:17960769   PMID:17975119   PMID:17992640   PMID:18065580   PMID:18201778   PMID:18280114  
PMID:18282109   PMID:18422024   PMID:18440731   PMID:18506375   PMID:18634911   PMID:18660489   PMID:18701184   PMID:18824579   PMID:19023099   PMID:19056482   PMID:19156719   PMID:19282863  
PMID:19288030   PMID:19324445   PMID:19367093   PMID:19384318   PMID:19439328   PMID:19475463   PMID:19491387   PMID:19499240   PMID:19578796   PMID:19689066   PMID:19689828   PMID:19878569  
PMID:19913121   PMID:19948975   PMID:19961041   PMID:20047744   PMID:20080390   PMID:20202768   PMID:20308031   PMID:20329566   PMID:20332099   PMID:20384434   PMID:20413122   PMID:20416077  
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FABP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384119,317,250 - 119,322,138 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4119,317,250 - 119,322,138 (-)EnsemblGRCh38hg38GRCh38
GRCh374120,238,405 - 120,243,293 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364120,457,853 - 120,462,766 (-)NCBINCBI36Build 36hg18NCBI36
Build 344120,596,008 - 120,600,921NCBI
Celera4117,600,001 - 117,604,911 (-)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4115,960,235 - 115,965,143 (-)NCBIHuRef
CHM1_14120,214,972 - 120,219,883 (-)NCBICHM1_1
T2T-CHM13v2.04122,622,352 - 122,627,246 (-)NCBIT2T-CHM13v2.0
Fabp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393122,688,721 - 122,693,155 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3122,688,721 - 122,693,155 (+)EnsemblGRCm39 Ensembl
GRCm383122,895,072 - 122,899,506 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3122,895,072 - 122,899,506 (+)EnsemblGRCm38mm10GRCm38
MGSCv373122,598,310 - 122,602,424 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363122,887,414 - 122,891,528 (+)NCBIMGSCv36mm8
Celera3129,305,754 - 129,309,868 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map353.74NCBI
Fabp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82213,724,629 - 213,728,686 (+)NCBIGRCr8
mRatBN7.22211,040,032 - 211,044,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2211,040,032 - 211,044,089 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2218,717,756 - 218,721,725 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02216,625,543 - 216,629,512 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02211,471,755 - 211,475,828 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02227,080,912 - 227,083,654 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,080,924 - 227,083,501 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,442,292 - 246,445,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,591,502 - 219,605,097 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12219,554,563 - 219,568,159 (+)NCBI
Celera2203,465,826 - 203,473,400 (+)NCBICelera
RH 3.4 Map21537.1RGD
Cytogenetic Map2q42NCBI
Fabp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542820,930,479 - 20,933,950 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542820,930,512 - 20,933,950 (+)NCBIChiLan1.0ChiLan1.0
FABP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23117,095,776 - 117,098,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14117,388,095 - 117,395,765 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04111,505,269 - 111,510,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14122,055,544 - 122,060,461 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4122,055,544 - 122,060,461 (-)Ensemblpanpan1.1panPan2
FABP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13238,244,065 - 38,248,093 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03238,465,352 - 38,497,153 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3238,465,346 - 38,492,684 (-)EnsemblROS_Cfam_1.0 Ensembl
Fabp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530167,281,463 - 67,284,661 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936869146,844 - 149,902 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936869146,567 - 149,929 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8104,464,342 - 104,470,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18104,464,342 - 104,468,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,120,922 - 112,124,639 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FABP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1766,797,832 - 66,803,459 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl766,798,990 - 66,802,738 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603745,658,385 - 45,663,315 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

.
Variants in FABP2
30 total Variants

1 to 10 of 70 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_000134.4(FABP2):c.163A>G (p.Thr55Ala) single nucleotide variant FABP2 POLYMORPHISM [RCV000017958]|not provided [RCV001650835] Chr4:119320747 [GRCh38]
Chr4:120241902 [GRCh37]
Chr4:4q26
benign
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2
pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3
pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q26-31.21(chr4:116630862-145429900)x1 copy number loss See cases [RCV000053321] Chr4:116630862..145429900 [GRCh38]
Chr4:117552018..146351052 [GRCh37]
Chr4:117771466..146570502 [NCBI36]
Chr4:4q26-31.21
pathogenic
NM_000134.3(FABP2):c.380G>A (p.Arg127Lys) single nucleotide variant Malignant melanoma [RCV000074317] Chr4:119319060 [GRCh38]
Chr4:120240215 [GRCh37]
Chr4:120459663 [NCBI36]
Chr4:4q26
not provided
GRCh38/hg38 4q26-27(chr4:118360303-120924156)x1 copy number loss See cases [RCV000138837] Chr4:118360303..120924156 [GRCh38]
Chr4:119281458..121845311 [GRCh37]
Chr4:119500906..122064761 [NCBI36]
Chr4:4q26-27
pathogenic
GRCh38/hg38 4q26(chr4:116090996-119545165)x1 copy number loss See cases [RCV000138236] Chr4:116090996..119545165 [GRCh38]
Chr4:117012152..120466320 [GRCh37]
Chr4:117231601..120685768 [NCBI36]
Chr4:4q26
likely pathogenic
GRCh38/hg38 4q26(chr4:118858868-119856165)x3 copy number gain See cases [RCV000139232] Chr4:118858868..119856165 [GRCh38]
Chr4:119780023..120777320 [GRCh37]
Chr4:119999471..120996768 [NCBI36]
Chr4:4q26
likely benign
GRCh38/hg38 4q26-28.3(chr4:117351881-133565667)x1 copy number loss See cases [RCV000143207] Chr4:117351881..133565667 [GRCh38]
Chr4:118273037..134486822 [GRCh37]
Chr4:118492485..134706272 [NCBI36]
Chr4:4q26-28.3
pathogenic
1 to 10 of 70 rows

Predicted Target Of
Summary Value
Count of predictions:752
Count of miRNA genes:448
Interacting mature miRNAs:478
Transcripts:ENST00000274024
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human
597335003GWAS1431077_Hpulmonary embolism QTL GWAS1431077 (human)8e-17pulmonary embolism4119320747119320748Human
597164218GWAS1260292_Handrosterone sulfate measurement QTL GWAS1260292 (human)0.000004androsterone sulfate measurement4119318723119318724Human
597294095GWAS1390169_HcGMP-specific 3',5'-cyclic phosphodiesterase measurement QTL GWAS1390169 (human)4e-12cGMP-specific 3',5'-cyclic phosphodiesterase measurement4119320694119320695Human
597061374GWAS1157448_Hmetabolic syndrome QTL GWAS1157448 (human)4e-08metabolic syndrome4119318723119318724Human
596961464GWAS1080983_Hmetabolic syndrome QTL GWAS1080983 (human)4e-08metabolic syndrome4119318723119318724Human

SHGC4-110  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,240,211 - 120,240,619UniSTSGRCh37
Build 364120,459,659 - 120,460,067RGDNCBI36
Celera4117,601,807 - 117,602,215RGD
Cytogenetic Map4q28-q31UniSTS
HuRef4115,962,041 - 115,962,449UniSTS
TNG Radiation Hybrid Map473768.0UniSTS
GDB:178665  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,240,775 - 120,240,878UniSTSGRCh37
Build 364120,460,223 - 120,460,326RGDNCBI36
Celera4117,602,371 - 117,602,477RGD
Cytogenetic Map4q28-q31UniSTS
HuRef4115,962,605 - 115,962,717UniSTS
SHGC-145405  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,242,866 - 120,243,175UniSTSGRCh37
Build 364120,462,314 - 120,462,623RGDNCBI36
Celera4117,604,461 - 117,604,770RGD
Cytogenetic Map4q28-q31UniSTS
HuRef4115,964,693 - 115,965,002UniSTS
TNG Radiation Hybrid Map1042794.0UniSTS
PMC31346P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,241,733 - 120,242,108UniSTSGRCh37
Build 364120,461,181 - 120,461,556RGDNCBI36
Celera4117,603,328 - 117,603,703RGD
Cytogenetic Map4q28-q31UniSTS
HuRef4115,963,560 - 115,963,935UniSTS
FABP2_200  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,238,315 - 120,239,210UniSTSGRCh37
Build 364120,457,763 - 120,458,658RGDNCBI36
Celera4117,599,911 - 117,600,806RGD
HuRef4115,960,145 - 115,961,040UniSTS
SHGC-59292  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,240,031 - 120,240,183UniSTSGRCh37
Build 364120,459,479 - 120,459,631RGDNCBI36
Celera4117,601,627 - 117,601,779RGD
Cytogenetic Map4q28-q31UniSTS
HuRef4115,961,861 - 115,962,013UniSTS
GeneMap99-GB4 RH Map4546.46UniSTS
Whitehead-RH Map4597.7UniSTS
NCBI RH Map41251.6UniSTS
SHGC4-8  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,240,730 - 120,240,934UniSTSGRCh37
Build 364120,460,178 - 120,460,382RGDNCBI36
Celera4117,602,326 - 117,602,533RGD
Cytogenetic Map4q28-q31UniSTS
HuRef4115,962,560 - 115,962,773UniSTS
Stanford-G3 RH Map46747.0UniSTS
NCBI RH Map41228.1UniSTS
GeneMap99-G3 RH Map46693.0UniSTS
SHGC-59542  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q28-q31UniSTS
HuRef4115,962,852 - 115,963,027UniSTS
GeneMap99-GB4 RH Map4556.1UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
615 1577 1536 1403 1880 1004 1094 1 310 827 219 723 4303 3317 4 1607 382 1047 744 93



Ensembl Acc Id: ENST00000274024   ⟹   ENSP00000274024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,317,250 - 119,322,138 (-)Ensembl
RefSeq Acc Id: NM_000134   ⟹   NP_000125
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,317,250 - 119,322,138 (-)NCBI
GRCh374120,238,405 - 120,243,316 (-)ENTREZGENE
Build 364120,457,853 - 120,462,766 (-)NCBI Archive
HuRef4115,960,235 - 115,965,143 (-)ENTREZGENE
CHM1_14120,214,972 - 120,219,883 (-)NCBI
T2T-CHM13v2.04122,622,352 - 122,627,246 (-)NCBI
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_000125 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA52417 (Get FASTA)   NCBI Sequence Viewer  
  AAH69466 (Get FASTA)   NCBI Sequence Viewer  
  AAH69617 (Get FASTA)   NCBI Sequence Viewer  
  AAH69625 (Get FASTA)   NCBI Sequence Viewer  
  AAH69637 (Get FASTA)   NCBI Sequence Viewer  
  AAI11792 (Get FASTA)   NCBI Sequence Viewer  
  EAW73666 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000274024
  ENSP00000274024.3
GenBank Protein P12104 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_000125   ⟸   NM_000134
- UniProtKB: Q2NKJ1 (UniProtKB/Swiss-Prot),   P12104 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000274024   ⟸   ENST00000274024

Name Modeler Protein Id AA Range Protein Structure
AF-P12104-F1-model_v2 AlphaFold P12104 1-132 view protein structure

RGD ID:6868366
Promoter ID:EPDNEW_H7348
Type:multiple initiation site
Name:FABP2_1
Description:fatty acid binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7349  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,322,138 - 119,322,198EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
COSMIC FABP2 COSMIC
Ensembl Genes ENSG00000145384 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000274024 ENTREZGENE
  ENST00000274024.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot
GTEx ENSG00000145384 GTEx
HGNC ID HGNC:3556 ENTREZGENE
Human Proteome Map FABP2 Human Proteome Map
InterPro Calycin UniProtKB/Swiss-Prot
  FABP2 UniProtKB/Swiss-Prot
  Fatty_acid-bd UniProtKB/Swiss-Prot
  ILBP UniProtKB/Swiss-Prot
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot
KEGG Report hsa:2169 UniProtKB/Swiss-Prot
NCBI Gene 2169 ENTREZGENE
OMIM 134640 OMIM
PANTHER PTHR11955 UniProtKB/Swiss-Prot
Pfam Lipocalin UniProtKB/Swiss-Prot
PharmGKB PA27957 PharmGKB
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot
PROSITE FABP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot
UniProt FABPI_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q2NKJ1 ENTREZGENE
UniProt Secondary Q2NKJ1 UniProtKB/Swiss-Prot
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 FABP2  fatty acid binding protein 2  FABP2  fatty acid binding protein 2, intestinal  Symbol and/or name change 5135510 APPROVED