BECN1 (beclin 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: BECN1 (beclin 1) Sus scrofa
Analyze
Symbol: BECN1
Name: beclin 1
RGD ID: 14027935
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cellular response to aluminum ion (ortholog); PARTICIPATES IN autophagy pathway; inositol metabolic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute necrotizing pancreatitis (ortholog); alcoholic cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); phosphatidylinositol 3-kinase complex, class III (ortholog); INTERACTS WITH 3-acetyldeoxynivalenol; 3-methyladenine; bisphenol A
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATG6; beclin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,041,956 - 20,054,373 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,041,914 - 20,054,249 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,256,871 - 20,268,928 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 84 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BECN1PigAcute Experimental Pancreatitis treatmentISOBecn1 (Mus musculus)9068941 RGDPMID:22850625 and REF_RGD_ID:11560530
BECN1Pigacute necrotizing pancreatitis  ISOBecn1 (Rattus norvegicus)9068941protein:increased expression:pancreasRGDPMID:21926933 and REF_RGD_ID:6483068
BECN1Pigalcoholic cardiomyopathy treatmentISOBecn1 (Mus musculus)9068941 RGDPMID:29039471 and REF_RGD_ID:407532638
BECN1Pigalcoholic hepatitis  ISOBecn1 (Mus musculus)9068941protein:increased expression:liverRGDPMID:31090940 and REF_RGD_ID:407445926
BECN1PigAlcoholic Liver Diseases  ISOBecn1 (Mus musculus)9068941protein:increased expression:liverRGDPMID:31090940 and REF_RGD_ID:407445926
BECN1PigAlzheimer's disease  ISOBecn1 (Mus musculus)9068941 RGDPMID:20863706 and REF_RGD_ID:6483102
BECN1PigAlzheimer's disease  ISOBECN1 (Homo sapiens)9068941protein:decreased expression:gray matterRGDPMID:18497889 and REF_RGD_ID:6483101
BECN1Pigamyotrophic lateral sclerosis  ISOBecn1 (Mus musculus)9068941mRNA:increased expression:spinal cordRGDPMID:23851366 and REF_RGD_ID:11561951
BECN1Piganterior ischemic optic neuropathy  ISOBecn1 (Rattus norvegicus)9068941protein:decreased expression:retinaRGDPMID:21490676 and REF_RGD_ID:6483070
BECN1PigBarrett's esophagus  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:22301112 and REF_RGD_ID:11561943
BECN1PigBarrett's esophagus disease_progressionISOBECN1 (Homo sapiens)9068941 RGDPMID:22301112 and REF_RGD_ID:11561943
BECN1PigBrain Hypoxia-Ischemia  ISOBecn1 (Rattus norvegicus)9068941protein:increased expression:cerebral cortexRGDPMID:22449108 and REF_RGD_ID:6483050
BECN1PigBrain Hypoxia-Ischemia  ISOBecn1 (Rattus norvegicus)9068941protein:increased expression:brainRGDPMID:25919564 and REF_RGD_ID:11558017
BECN1Pigbrain infarction  ISOBecn1 (Rattus norvegicus)9068941protein:increased expression:brainRGDPMID:22227058 and REF_RGD_ID:6483057
BECN1PigBrain Injuries  ISOBecn1 (Rattus norvegicus)9068941protein:increased expression:hippocampusRGDPMID:24221859 and REF_RGD_ID:11558018
BECN1PigBrain Injuries  ISOBecn1 (Mus musculus)9068941protein:increased expression:brainRGDPMID:16874043 and REF_RGD_ID:6483314
BECN1PigBrain Injuries  ISOBecn1 (Rattus norvegicus)9068941protein:increased expression:neuron and astrocyteRGDPMID:18500386 and REF_RGD_ID:6483098
BECN1Pigbrain ischemia  ISOBecn1 (Rattus norvegicus)9068941protein:increased expression:hippocampus and frontal cortexRGDPMID:17936001 and REF_RGD_ID:6483313
BECN1Pigbrain ischemia  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:19574998 and REF_RGD_ID:6483094
BECN1Pigbreast cancer disease_progressionISOBECN1 (Homo sapiens)9068941 RGDPMID:33292020 and REF_RGD_ID:155641236
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Object Symbol
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Evidence
With
Reference
Notes
Source
Original Reference(s)
BECN1PigBrain Injuries  ISOBECN1 (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:34929507
BECN1PigColonic Neoplasms  ISOBECN1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20876807
BECN1PigLewy body dementia  ISOBECN1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:19628769
BECN1PigLung Neoplasms  ISOBECN1 (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:22481206 and PMID:23790316
BECN1Pigmyocardial infarction  ISOBECN1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20079142
BECN1PigSpinal Cord Injuries  ISOBECN1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:29793971
BECN1Pigstatus epilepticus  ISOBECN1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:19138675
Object Symbol
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Term
Qualifier
Evidence
With
Reference
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Original Reference(s)
BECN1Pigsystemic lupus erythematosus  ISOBecn1 (Mus musculus)9068941OMIM:152700 more ...MouseDO 

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Object Symbol
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Qualifier
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Reference
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Source
Original Reference(s)
BECN1Pig3-acetyldeoxynivalenol decreases expressionEXP 64804643-acetyldeoxynivalenol results in decreased expression of BECN1 proteinCTDPMID:37659622
BECN1Pig3-methyladenine multiple interactionsEXP 64804643-methyladenine affects the reaction [[MYD88 protein affects the susceptibility to Paraquat] which affects the expression of BECN1 mRNA] more ...CTDPMID:28803810 and PMID:34811946
BECN1Pigbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of BECN1 mRNACTDPMID:28819136
BECN1Pigdeoxynivalenol increases expressionEXP 6480464deoxynivalenol results in increased expression of BECN1 mRNA and deoxynivalenol results in increased expression of BECN1 proteinCTDPMID:35381244 and PMID:37120089
BECN1Pigdeoxynivalenol multiple interactionsEXP 64804646-formylindolo(3 more ...CTDPMID:35381244 and PMID:37120089
BECN1Pigmelatonin increases expressionEXP 6480464Melatonin results in increased expression of BECN1 proteinCTDPMID:37120089
BECN1Pigmelatonin multiple interactionsEXP 6480464Melatonin inhibits the reaction [deoxynivalenol results in increased expression of BECN1 protein]CTDPMID:37120089
BECN1Pignorflurazon increases expressionEXP 6480464norflurazone results in increased expression of BECN1 proteinCTDPMID:38432436
BECN1Pigochratoxin A increases expressionEXP 6480464ochratoxin A results in increased expression of BECN1 proteinCTDPMID:30287338
BECN1Pigochratoxin A multiple interactionsEXP 6480464BECN1 protein affects the reaction [ochratoxin A results in increased cleavage of CASP3 protein] and BECN1 protein affects the reaction [ochratoxin A results in increased cleavage of PARP1 protein]CTDPMID:30287338
BECN1Pigparaquat multiple interactionsEXP 64804643-methyladenine affects the reaction [[MYD88 protein affects the susceptibility to Paraquat] which affects the expression of BECN1 mRNA] more ...CTDPMID:34811946
BECN1Pigsirolimus multiple interactionsEXP 6480464Sirolimus affects the reaction [[MYD88 protein affects the susceptibility to Paraquat] which affects the expression of BECN1 mRNA] and Sirolimus affects the reaction [Paraquat affects the reaction [MYD88 protein affects the expression of BECN1 protein]]CTDPMID:34811946
BECN1Pigsodium arsenite multiple interactionsEXP 64804646-formylindolo(3 more ...CTDPMID:35381244
BECN1Pigzinc sulfate increases expressionEXP 6480464Zinc Sulfate results in increased expression of BECN1 proteinCTDPMID:28803810
BECN1Pigzinc sulfate multiple interactionsEXP 64804643-methyladenine inhibits the reaction [Zinc Sulfate results in increased expression of BECN1 protein]CTDPMID:28803810

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Biological Process
1 to 20 of 76 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BECN1Pigamyloid-beta metabolic process acts_upstream_of_or_withinIEAUniProtKB:O88597 and ensembl:ENSMUSP00000119369150520179 EnsemblGO_REF:0000107
BECN1Pigapoptotic process involved_inIEAUniProtKB-KW:KW-0053150520179 UniProtGO_REF:0000043
BECN1Pigautophagosome assembly  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:16420522 and REF_RGD_ID:1643189
BECN1Pigautophagosome assembly involved_inIEAUniProtKB:O88597 more ...150520179 EnsemblGO_REF:0000107
BECN1Pigautophagosome assembly involved_inISSUniProtKB:O88597150520179 UniProtGO_REF:0000024
BECN1Pigautophagosome assembly involved_inIEAUniRule:UR001453755150520179 UniProtGO_REF:0000104
BECN1Pigautophagosome assembly involved_inIBAMGI:1891828 more ...150520179 GO_CentralGO_REF:0000033
BECN1Pigautophagosome maturation involved_inIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigautophagy  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:16697404 more ...
BECN1Pigautophagy acts_upstream_of_or_withinIEAUniProtKB:O88597 and ensembl:ENSMUSP00000119369150520179 EnsemblGO_REF:0000107
BECN1Pigautophagy involved_inIEAInterPro:IPR007243150520179 InterProGO_REF:0000002
BECN1Pigautophagy involved_inIEAARBA:ARBA00027757150520179 UniProtGO_REF:0000117
BECN1Pigautophagy involved_inIEAUniProtKB-KW:KW-0072150520179 UniProtGO_REF:0000043
BECN1Pigautophagy involved_inIEAUniRule:UR001453755150520179 UniProtGO_REF:0000104
BECN1Pigautophagy involved_inISSUniProtKB:Q14457150520179 UniProtGO_REF:0000024
BECN1Pigautophagy involved_inIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigcell division involved_inIEAUniProtKB-KW:KW-0132150520179 UniProtGO_REF:0000043
BECN1Pigcellular response to aluminum ion  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:22138567 and REF_RGD_ID:6483058
BECN1Pigcellular response to amino acid starvation  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:22835012 and REF_RGD_ID:11561942
BECN1Pigcellular response to copper ion  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:22540380 and REF_RGD_ID:11561917
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Cellular Component
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BECN1Pigautophagosome located_inIEAUniProtKB:O88597 and ensembl:ENSMUSP00000119369150520179 EnsemblGO_REF:0000107
BECN1Pigautophagosome located_inIEAUniRule:UR001453755150520179 UniProtGO_REF:0000104
BECN1Pigautophagosome located_inIEAUniProtKB-SubCell:SL-0023150520179 UniProtGO_REF:0000044
BECN1Pigcytoplasm is_active_inISOBecn1 (Mus musculus)9068941 PMID:22498477UniProtPMID:22498477
BECN1Pigcytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
BECN1Pigcytoplasm located_inIEAUniProtKB:O88597 more ...150520179 EnsemblGO_REF:0000107
BECN1Pigcytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
BECN1Pigcytoplasm located_inIEAUniRule:UR001453755150520179 UniProtGO_REF:0000104
BECN1Pigcytoplasmic side of mitochondrial outer membrane located_inIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigcytoplasmic vesicle located_inIEAUniProtKB:O88597 and ensembl:ENSMUSP00000119369150520179 EnsemblGO_REF:0000107
BECN1Pigcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
BECN1Pigcytosol located_inIEAUniProtKB:A0A024R1X5 more ...150520179 EnsemblGO_REF:0000107
BECN1Pigdendrite  ISOBecn1 (Rattus norvegicus)9068941 RGDPMID:21490676 and REF_RGD_ID:6483070
BECN1Pigendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
BECN1Pigendoplasmic reticulum located_inIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
BECN1Pigendoplasmic reticulum membrane located_inIEAUniRule:UR001453755150520179 UniProtGO_REF:0000104
BECN1Pigendosome located_inIEAUniProtKB-KW:KW-0967150520179 UniProtGO_REF:0000043
BECN1Pigendosome located_inIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigendosome membrane located_inIEAUniProtKB-SubCell:SL-0100150520179 UniProtGO_REF:0000044
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Molecular Function
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Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BECN1PigGTPase binding enablesIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigidentical protein binding enablesIEAUniProtKB:O88597 and ensembl:ENSMUSP00000119369150520179 EnsemblGO_REF:0000107
BECN1Pigmolecular adaptor activity enablesIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigphosphatidylinositol 3-kinase binding enablesIBAPANTHER:PTN000298965 and UniProtKB:Q14457150520179 GO_CentralGO_REF:0000033
BECN1Pigphosphatidylinositol 3-kinase binding enablesIEAUniProtKB:Q14457 and ensembl:ENSP00000465364150520179 EnsemblGO_REF:0000107
BECN1Pigprotein binding enablesISOUniProtKB:Q96KP19068941 PMID:24056301UniProtPMID:24056301
BECN1Pigprotein binding enablesISOUniProtKB:P104179068941 PMID:22258505 more ...IntActPMID:22258505 more ...
BECN1Pigprotein binding enablesISOUniProtKB:A2AU729068941 PMID:34428398UniProtPMID:34428398
BECN1Pigprotein binding enablesISOUniProtKB:Q8BH609068941 PMID:12372286IntActPMID:12372286
BECN1Pigprotein binding enablesISOPR:Q8BH609068941 PMID:12372286MGIPMID:12372286
BECN1Pigprotein binding enablesISOPR:Q9JK489068941 PMID:17891140MGIPMID:17891140
BECN1Pigprotein binding enablesISOPR:Q9QUM49068941 PMID:22493499MGIPMID:22493499
BECN1Pigprotein binding enablesISOUniProtKB:Q6PF93 and UniProtKB:Q8VCQ39068941 PMID:24849286IntActPMID:24849286
BECN1Pigprotein binding enablesISOPR:A2AH229068941 PMID:17589504MGIPMID:17589504
BECN1Pigprotein binding enablesISOPR:P34152 more ...9068941 PMID:27994061MGIPMID:27994061
BECN1Pigprotein binding enablesISOUniProtKB:P0C6X5-PRO_00002838769068941 PMID:25311841IntActPMID:25311841
BECN1Pigprotein binding enablesISOUniProtKB:Q07817 and UniProtKB:Q9HD369068941 PMID:22498477UniProtPMID:22498477
BECN1Pigprotein binding enablesISOUniProtKB:Q14694 and UniProtKB:Q929959068941 PMID:21962518UniProtPMID:21962518
BECN1Pigprotein binding enablesISOUniProtKB:Q6ZNE5 more ...9068941 PMID:19270696UniProtPMID:19270696
BECN1Pigprotein binding enablesISOUniProtKB:P10415 and UniProtKB:Q9C0C79068941 PMID:21358617IntActPMID:21358617
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RGD Manual Annotations


  

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BECN1Piginositol metabolic pathway  ISOBECN1 (Homo sapiens)9068941 SMPDBSMP:00011
BECN1Pigphosphoinositide metabolic pathway  ISOBECN1 (Homo sapiens)9068941 SMPDBSMP:00463
PMID:14681463   PMID:23056260   PMID:29698908   PMID:30032202  



BECN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,041,956 - 20,054,373 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,041,914 - 20,054,249 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,256,871 - 20,268,928 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BECN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,810,132 - 42,824,282 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,810,134 - 42,833,350 (-)EnsemblGRCh38hg38GRCh38
GRCh371740,962,150 - 40,976,300 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361738,215,678 - 38,229,807 (-)NCBINCBI36Build 36hg18NCBI36
Build 341738,215,677 - 38,229,807NCBI
Celera1737,618,135 - 37,632,364 (-)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1736,726,539 - 36,740,774 (-)NCBIHuRef
CHM1_11741,197,767 - 41,211,922 (-)NCBICHM1_1
T2T-CHM13v2.01743,667,271 - 43,682,705 (-)NCBIT2T-CHM13v2.0
Becn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,179,084 - 101,193,112 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,176,778 - 101,193,112 (-)EnsemblGRCm39 Ensembl
GRCm3811101,288,258 - 101,302,286 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,285,952 - 101,302,286 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711101,149,581 - 101,163,581 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,067,439 - 102,081,397 (-)NCBIMGSCv36mm8
MGSCv3611101,104,357 - 101,118,357 (-)NCBIMGSCv36mm8
Cytogenetic Map11DNCBI
cM Map1164.58NCBI
Becn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,731,649 - 86,747,002 (-)NCBIGRCr8
mRatBN7.21086,231,387 - 86,246,742 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,231,388 - 86,246,742 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,269,132 - 91,284,493 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,743,662 - 90,759,021 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,136,830 - 86,152,190 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,209,944 - 89,225,297 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,209,940 - 89,225,297 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,008,975 - 89,024,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41090,317,957 - 90,333,329 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11090,332,322 - 90,347,231 (-)NCBI
Celera1084,949,343 - 84,964,691 (-)NCBICelera
Cytogenetic Map10q31NCBI
Becn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,616,595 - 16,625,730 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,616,595 - 16,625,731 (-)NCBIChiLan1.0ChiLan1.0
BECN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,152,390 - 22,175,667 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,042,657 - 24,065,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,493,619 - 14,507,809 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,719,781 - 14,733,286 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1714,719,781 - 14,733,286 (+)Ensemblpanpan1.1panPan2
BECN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,204,203 - 20,215,081 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,204,220 - 20,214,236 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,665,517 - 19,676,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,922,592 - 20,933,221 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,922,586 - 20,933,212 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,707,479 - 19,718,113 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,973,720 - 19,984,352 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,076,426 - 20,087,053 (+)NCBIUU_Cfam_GSD_1.0
Becn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,544,014 - 19,557,039 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,517,751 - 17,531,151 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,518,100 - 17,531,126 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BECN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,469,187 - 63,482,627 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,469,192 - 63,485,322 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,260,316 - 34,273,836 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Becn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,385,756 - 1,405,714 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,386,154 - 1,406,314 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in BECN1
407 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000018925   ⟹   ENSSSCP00000018420
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,041,971 - 20,053,990 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000063037   ⟹   ENSSSCP00000056173
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,041,976 - 20,054,373 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000072775   ⟹   ENSSSCP00000073212
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,041,956 - 20,053,229 (+)Ensembl
RefSeq Acc Id: NM_001044530   ⟹   NP_001037995
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,041,970 - 20,053,488 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980932   ⟹   XP_013836386
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,041,914 - 20,054,249 (+)NCBI
Sequence:
Protein RefSeqs NP_001037995 (Get FASTA)   NCBI Sequence Viewer  
  XP_013836386 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAJ19745 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000056173
GenBank Protein JAG69695 (Get FASTA)   NCBI Sequence Viewer  
  Q4A1L5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013836386   ⟸   XM_013980932
- Peptide Label: isoform X1
- UniProtKB: A0A287BIH8 (UniProtKB/TrEMBL),   A0A4X1TXX7 (UniProtKB/TrEMBL),   A0A0B8RTW6 (UniProtKB/TrEMBL),   A0A8D0SQZ4 (UniProtKB/TrEMBL),   A0A8D0YVN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001037995   ⟸   NM_001044530
- UniProtKB: Q4A1L5 (UniProtKB/Swiss-Prot),   A0A8D0YVN7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000018420   ⟸   ENSSSCT00000018925
Ensembl Acc Id: ENSSSCP00000056173   ⟸   ENSSSCT00000063037
Ensembl Acc Id: ENSSSCP00000073212   ⟸   ENSSSCT00000072775
Atg6 BARA   Atg6/beclin coiled-coil   Beclin-1 BH3



1 to 26 of 26 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000017386 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000063037 ENTREZGENE
Gene3D-CATH 1.10.418.40 UniProtKB/Swiss-Prot
  6.10.250.3110 UniProtKB/Swiss-Prot
InterPro Atg6/Beclin UniProtKB/Swiss-Prot
  Atg6/Beclin_C_sf UniProtKB/Swiss-Prot
  Atg6/beclin_CC UniProtKB/Swiss-Prot
  Atg6_BARA UniProtKB/Swiss-Prot
  BH3_dom UniProtKB/Swiss-Prot
KEGG Report ssc:733576 UniProtKB/Swiss-Prot
NCBI Gene BECN1 ENTREZGENE
PANTHER PTHR12768 UniProtKB/Swiss-Prot
  PTHR12768:SF6 UniProtKB/Swiss-Prot
Pfam APG6 UniProtKB/Swiss-Prot
  APG6_N UniProtKB/Swiss-Prot
  BH3 UniProtKB/Swiss-Prot
UniProt A0A0B8RTW6 ENTREZGENE
  A0A287BIH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TXX7 ENTREZGENE
  A0A4X1TY45_PIG UniProtKB/TrEMBL
  A0A8D0SK52_PIG UniProtKB/TrEMBL
  A0A8D0SQZ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YVN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1X9A6_PIG UniProtKB/TrEMBL
  BECN1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:85798 ENTREZGENE
1 to 26 of 26 rows