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Gene: SLC6A1 (solute carrier family 6 member 1) Sus scrofa

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Symbol:

SLC6A1

Name:

solute carrier family 6 member 1

RGD ID:

13953559

Description:

ENCODES a protein that exhibits gamma-aminobutyric acid:sodium:chloride symporter activity (ortholog); identical protein binding (ortholog); INVOLVED IN gamma-aminobutyric acid import (ortholog); learning (ortholog); negative regulation of synaptic transmission, GABAergic (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); amyotrophic lateral sclerosis (ortholog); Atrioventricular Septal Defect 2 (ortholog); FOUND IN cell surface (ortholog); postsynaptic membrane (ortholog); presynaptic membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sodium- and chloride-dependent GABA transporter 1; solute carrier family 6 (neurotransmitter transporter, GABA), member 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	67,179,765 - 67,197,107 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	67,156,786 - 67,199,092 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	74,321,093 - 74,341,573 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	alcohol dependence	susceptibility	ISO	SLC6A1 (Homo sapiens)	9068941	DNA:insertion:promoter:: (human)	RGD	PMID:26727527 and REF_RGD_ID:11552767
SLC6A1	Pig	brain ischemia		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:15084665 and REF_RGD_ID:1643209
SLC6A1	Pig	cerebral infarction		ISO	Slc6a1 (Rattus norvegicus)	9068941	mRNA:increased expression:cerebral cortex and neuron	RGD	PMID:15349978 and REF_RGD_ID:1643205
SLC6A1	Pig	Nervous System Lead Poisoning, Adult		ISO	Slc6a1 (Rattus norvegicus)	9068941	protein:increased expression:brain and synaptosome	RGD	PMID:15149801 and REF_RGD_ID:1643208
SLC6A1	Pig	obesity		ISO	Slc6a1 (Mus musculus)	9068941		RGD	PMID:11191352 and REF_RGD_ID:1643191
SLC6A1	Pig	Pain		ISO	Slc6a1 (Mus musculus)	9068941		RGD	PMID:17918738 and REF_RGD_ID:1643217
SLC6A1	Pig	temporal lobe epilepsy		ISO	Slc6a1 (Rattus norvegicus)	9068941	protein:decreased expression:hippocampus	RGD	PMID:15248296 and REF_RGD_ID:1643206
SLC6A1	Pig	temporal lobe epilepsy		ISO	Slc6a1 (Mus musculus)	9068941	protein:decreased expression:hippocampus	RGD	PMID:15248296 and REF_RGD_ID:1643206
SLC6A1	Pig	temporal lobe epilepsy		ISO	SLC6A1 (Homo sapiens)	9068941	protein:decreased expression:hippocampus	RGD	PMID:15248296 and REF_RGD_ID:1643206
SLC6A1	Pig	withdrawal disorder		ISO	Slc6a1 (Rattus norvegicus)	9068941	protein:increased expression:cerebral cortex	RGD	PMID:15976529 and REF_RGD_ID:1643202

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	Atrioventricular Septal Defect 2		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Atrioventricular septal defect more ...	ClinVar	PMID:28492532
SLC6A1	Pig	autism spectrum disorder		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism spectrum disorders	ClinVar	PMID:22495306 more ...
SLC6A1	Pig	autosomal dominant nocturnal frontal lobe epilepsy		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal dominant epilepsy	ClinVar	PMID:25865495 more ...
SLC6A1	Pig	benign epilepsy with centrotemporal spikes		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Rolandic epilepsy	ClinVar	PMID:25741868 more ...
SLC6A1	Pig	Developmental Disabilities		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Global developmental delay	ClinVar	PMID:25363768 more ...
SLC6A1	Pig	epilepsy		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Seizure	ClinVar	PMID:25741868 more ...
SLC6A1	Pig	epilepsy		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
SLC6A1	Pig	genetic disease		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:17576681 more ...
SLC6A1	Pig	intellectual disability		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
SLC6A1	Pig	Marfanoid Mental Retardation Syndrome, Autosomal		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Marfanoid habitus and intellectual disability	ClinVar	PMID:25741868 and PMID:39825153
SLC6A1	Pig	Myoclonic Epilepsies		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14744863 more ...
SLC6A1	Pig	myoclonic-atonic epilepsy		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14744863 more ...
SLC6A1	Pig	myoclonic-atonic epilepsy		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14744863 more ...
SLC6A1	Pig	myoclonic-atonic epilepsy		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14744863 more ...
SLC6A1	Pig	myoclonic-atonic epilepsy		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:14744863 more ...
SLC6A1	Pig	Neurodevelopmental Disorders		ISO	SLC6A1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	amyotrophic lateral sclerosis		ISO	SLC6A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:20132478
SLC6A1	Pig	schizophrenia		ISO	SLC6A1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:18923069
SLC6A1	Pig	withdrawal disorder		ISO	SLC6A1 (Homo sapiens)	9068941	CTD Direct Evidence: therapeutic	CTD	PMID:14598306

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	schizophrenia		ISO	Slc6a1 (Mus musculus)	9068941	OMIM:181500	MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	myoclonic-atonic epilepsy		ISO	SLC6A1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	amino acid transmembrane transport	involved_in	IEA	GO:0005283	150520179		GOC	GO_REF:0000108
SLC6A1	Pig	amino acid transport	involved_in	IBA	FB:FBgn0029762 more ...	150520179		GO_Central	GO_REF:0000033
SLC6A1	Pig	associative learning	acts_upstream_of	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	chloride transmembrane transport	involved_in	IEA	UniProtKB:P30531 and ensembl:ENSP00000287766	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	gamma-aminobutyric acid import		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:16378241 and REF_RGD_ID:1643199
SLC6A1	Pig	gamma-aminobutyric acid import	involved_in	IEA	UniProtKB:P30531 more ...	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	gamma-aminobutyric acid transport	involved_in	IEA	GO:0005332	150520179		GOC	GO_REF:0000108
SLC6A1	Pig	inorganic anion import across plasma membrane	involved_in	IEA	UniProtKB:P30531 and ensembl:ENSP00000287766	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	learning		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:12110474 and REF_RGD_ID:1643216
SLC6A1	Pig	memory	acts_upstream_of	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	negative regulation of synaptic transmission, GABAergic		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:17317750 and REF_RGD_ID:1643193
SLC6A1	Pig	neurotransmitter reuptake	involved_in	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	neurotransmitter transport	involved_in	IEA	InterPro:IPR002980	150520179		InterPro	GO_REF:0000002
SLC6A1	Pig	positive regulation of gamma-aminobutyric acid secretion		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:14500747 and REF_RGD_ID:1643212
SLC6A1	Pig	response to calcium ion		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:15778221 and REF_RGD_ID:1643203
SLC6A1	Pig	response to cocaine		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:12832547 and REF_RGD_ID:1643213
SLC6A1	Pig	response to estradiol		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:15664431 and REF_RGD_ID:1643204
SLC6A1	Pig	response to lead ion		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:15149801 and REF_RGD_ID:1643208
SLC6A1	Pig	response to methamphetamine hydrochloride		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:30275762 and REF_RGD_ID:405850255
SLC6A1	Pig	response to purine-containing compound		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:16730753 and REF_RGD_ID:1643197
SLC6A1	Pig	response to sucrose		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:15778221 and REF_RGD_ID:1643203
SLC6A1	Pig	response to toxic substance		ISO	Slc6a1 (Rattus norvegicus)	9068941	botulinum toxin C1	RGD	PMID:14500747 and REF_RGD_ID:1643212
SLC6A1	Pig	response to toxic substance		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:14643747 and REF_RGD_ID:1643211
SLC6A1	Pig	response to xenobiotic stimulus		ISO	Slc6a1 (Rattus norvegicus)	9068941	levetiracetam	RGD	PMID:17408599 and REF_RGD_ID:1643196
SLC6A1	Pig	sodium ion import across plasma membrane	involved_in	IEA	UniProtKB:P30531 and ensembl:ENSP00000287766	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	sodium ion transmembrane transport	involved_in	IBA	PANTHER:PTN000177662 and UniProtKB:P30531	150520179		GO_Central	GO_REF:0000033
SLC6A1	Pig	synapse organization	acts_upstream_of	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	transmembrane transport	involved_in	IEA	GO:0015293	150520179		GOC	GO_REF:0000108

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	axon	is_active_in	IBA	MGI:95627 and PANTHER:PTN002614539	150520179		GO_Central	GO_REF:0000033
SLC6A1	Pig	axon	located_in	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	cell surface	is_active_in	IBA	PANTHER:PTN002614539 and Slc6a1 (Rattus norvegicus)	150520179		GO_Central	GO_REF:0000033
SLC6A1	Pig	cell surface		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:14500747 and REF_RGD_ID:1643212
SLC6A1	Pig	GABA-ergic synapse	is_active_in	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	150520179		UniProt	GO_REF:0000044
SLC6A1	Pig	membrane	located_in	IEA	InterPro:IPR000175 and InterPro:IPR002980	150520179		InterPro	GO_REF:0000002
SLC6A1	Pig	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
SLC6A1	Pig	neuronal cell body	located_in	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	plasma membrane	located_in	IEA	InterPro:IPR002980	150520179		InterPro	GO_REF:0000002
SLC6A1	Pig	plasma membrane	is_active_in	IEA	UniProtKB:P30531 and ensembl:ENSP00000287766	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	plasma membrane	is_active_in	IBA	FB:FBgn0011603 more ...	150520179		GO_Central	GO_REF:0000033
SLC6A1	Pig	plasma membrane	located_in	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	postsynaptic membrane	is_active_in	ISO	Slc6a1 (Rattus norvegicus)	9068941	PMID:24368619	SynGO	PMID:24368619 and REF_RGD_ID:13702342
SLC6A1	Pig	presynapse	located_in	IEA	GO:0098810	150520179		GOC	GO_REF:0000108
SLC6A1	Pig	presynaptic membrane	is_active_in	ISO	Slc6a1 (Rattus norvegicus)	9068941	PMID:25120439	SynGO	PMID:25120439 and REF_RGD_ID:13702462
SLC6A1	Pig	presynaptic membrane	is_active_in	ISO	Slc6a1 (Rattus norvegicus)	9068941	PMID:24368619	SynGO	PMID:24368619 and REF_RGD_ID:13702342

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SLC6A1	Pig	amino acid:sodium symporter activity	enables	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	gamma-aminobutyric acid transmembrane transporter activity	enables	IEA	UniProtKB:P31648 and ensembl:ENSMUSP00000032454	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	gamma-aminobutyric acid:sodium:chloride symporter activity	enables	IBA	MGI:95627 more ...	150520179		GO_Central	GO_REF:0000033
SLC6A1	Pig	gamma-aminobutyric acid:sodium:chloride symporter activity	enables	IEA	UniProtKB:P30531 more ...	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	gamma-aminobutyric acid:sodium:chloride symporter activity	enables	IEA	InterPro:IPR002980	150520179		InterPro	GO_REF:0000002
SLC6A1	Pig	gamma-aminobutyric acid:sodium:chloride symporter activity		ISO	Slc6a1 (Rattus norvegicus)	9068941		RGD	PMID:1975955 and REF_RGD_ID:632739
SLC6A1	Pig	identical protein binding		ISO	Slc6a1 (Rattus norvegicus)	9068941	homooligomerization	RGD	PMID:16314925 and REF_RGD_ID:1643201
SLC6A1	Pig	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
SLC6A1	Pig	protein binding	enables	ISO	UniProtKB:O75031	9068941	PMID:32296183	IntAct	PMID:32296183
SLC6A1	Pig	protein binding		ISO	Stx1a (Rattus norvegicus)	9068941		RGD	PMID:11017172 and REF_RGD_ID:4891372
SLC6A1	Pig	sodium:chloride symporter activity	enables	IEA	UniProtKB:P30531 and ensembl:ENSP00000287766	150520179		Ensembl	GO_REF:0000107
SLC6A1	Pig	symporter activity	enables	IEA	UniProtKB-KW:KW-0769	150520179		UniProt	GO_REF:0000043

PMID:22301074	PMID:30032202

SLC6A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	67,179,765 - 67,197,107 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	67,156,786 - 67,199,092 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	74,321,093 - 74,341,573 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC6A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	10,992,748 - 11,039,247 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	10,992,186 - 11,039,247 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	11,034,434 - 11,080,933 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	11,009,453 - 11,055,935 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	11,009,455 - 11,055,934	NCBI
Celera	3	10,969,866 - 11,016,381 (+)	NCBI		Celera
Cytogenetic Map	3	p25.3	ENTREZGENE
HuRef	3	10,969,346 - 11,015,750 (+)	NCBI		HuRef
CHM1_1	3	10,984,449 - 11,030,960 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	10,987,230 - 11,033,712 (+)	NCBI		T2T-CHM13v2.0

Slc6a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	114,259,735 - 114,294,491 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	114,259,596 - 114,294,493 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	114,282,635 - 114,317,525 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	114,282,635 - 114,317,532 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	114,232,629 - 114,267,519 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	114,248,369 - 114,283,117 (+)	NCBI		MGSCv36	mm8
Celera	6	116,104,017 - 116,138,918 (+)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	53.05	NCBI

Slc6a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	149,004,447 - 149,037,840 (+)	NCBI		GRCr8
mRatBN7.2	4	147,448,961 - 147,482,295 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	147,466,965 - 147,482,293 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	152,852,597 - 152,867,957 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	148,633,475 - 148,648,835 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	147,262,896 - 147,278,256 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	146,258,842 - 146,292,176 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	146,276,862 - 146,292,213 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	209,552,452 - 209,585,794 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	150,249,867 - 150,265,186 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	150,494,707 - 150,510,027 (+)	NCBI
Celera	4	136,018,664 - 136,033,983 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Slc6a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	13,930,905 - 13,947,389 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	13,930,899 - 13,946,010 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC6A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	10,990,452 - 11,037,034 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	10,995,212 - 11,041,794 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	10,930,455 - 10,976,968 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	11,296,014 - 11,323,624 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	11,296,023 - 11,323,624 (+)	Ensembl	panpan1.1		panPan2

SLC6A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	7,341,071 - 7,383,197 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	7,341,072 - 7,383,287 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	7,376,561 - 7,418,616 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	7,371,107 - 7,413,167 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	7,371,116 - 7,413,202 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	7,087,370 - 7,129,439 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	7,443,566 - 7,485,634 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	7,415,545 - 7,457,611 (-)	NCBI		UU_Cfam_GSD_1.0

Slc6a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	16,512,443 - 16,550,935 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	2,357,607 - 2,379,061 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	2,359,151 - 2,397,346 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC6A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	47,033,436 - 47,076,785 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	47,033,467 - 47,078,844 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	119,446,780 - 119,492,006 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc6a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624943	631,632 - 662,902 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624943	632,534 - 662,924 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in SLC6A1
569 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
7	2	21	1	4	6	4	21	2	1


RefSeq Transcripts	XM_021069340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021069341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK390001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK400140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU633270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000012669 ⟹ ENSSSCP00000012336

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	67,179,765 - 67,197,107 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000050804 ⟹ ENSSSCP00000034131

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	67,179,765 - 67,197,107 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000070749 ⟹ ENSSSCP00000069117

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	67,179,857 - 67,197,107 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000073399 ⟹ ENSSSCP00000070313

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	67,179,765 - 67,181,304 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000098414 ⟹ ENSSSCP00000081081

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	67,181,608 - 67,197,107 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000101606 ⟹ ENSSSCP00000078672

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	67,179,765 - 67,181,325 (+)	Ensembl

RefSeq Acc Id:

XM_021069340 ⟹ XP_020924999

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	67,156,786 - 67,199,092 (+)	NCBI

Sequence:

show sequence

CCCTCTTCCCCGCGTGCCTCCGCCCGCCCTCGGAAGACCGAGCGAGCGGCGAGGTTGCGGGCGATAGTCGCGGAGCTGAGGAGCCGGGAACGCAGCGGAGCGGCCGAGCTGCCCGCGCAGCGCCCGCC
GCGGGCAGCGCAGCCCGGGCCGCAGGCTCTCACCTGGGGTTGCAGGCGGAGCTGCTGTGGAGCTGACCCAGCACAGAAAACCATCAGGGTGACCTTGAGCTGCAAAGCTGCTGTCCACGTGGACTGGA
GCTGACATCGCGCGTCCATCTGCCAGGACCCCTGCATCCAGACTCCGAGACATGGCAACCAACAGCAGCAAGGTGGCCGATGGGCAAATCTCCACGGAGGTCAGCGAGGTCCCTGTGGCCAACGACAA
GCCCAAAACCCTGGTGGTCAAGGTGCAGAAGAAGGCGGCGGACCTTCCGGACCGGGACACATGGAAGGGCCGCTTCGACTTCCTCATGTCCTGCGTGGGCTATGCCATTGGTCTGGGCAATGTCTGGA
GATTCCCTTATCTCTGCGGGAAGAACGGTGGTGGAGCCTTCCTGATCCCCTACTTCCTGACGCTCATCTTTGCGGGTGTCCCGCTCTTCCTGCTGGAGTGCTCCCTGGGCCAGTACACCTCCATCGGG
GGCCTGGGGGTGTGGAAGCTGGCTCCCATGTTCAAGGGTGTGGGCCTCGCCGCCGCTGTGCTCTCGTTCTGGCTGAACATCTACTACATCGTCATCATCTCCTGGGCCATCTACTACCTGTACAACTC
CTTCACCACAACGCTGCCATGGAAACAGTGTGACAACCCCTGGAATACAGACCGCTGCTTCTCCAACTACAGCATCGTCAATACCACCAACATGACCAGCGCCGTGGTGGAGTTCTGGGAGCGCAACA
TGCACCAGATGACAGACGGACTGGATAAGCCGGGTCAGATCCGCTGGCCTCTGGCCATCACCCTGGCCATCGCCTGGATCCTTGTGTATTTCTGTATCTGGAAGGGTGTTGGCTGGACTGGAAAGGTG
GTCTACTTCTCGGCCACATATCCCTACATCATGCTGATCATCCTGTTCTTCCGTGGGGTGACACTGCCTGGTGCCAAGGAAGGCATCCTCTTCTATATCACACCCAACTTCCGCAAGCTGTCAGACTC
TGAGGTGTGGCTGGATGCAGCTACTCAGATCTTCTTCTCATACGGACTGGGTCTGGGGTCCCTGATTGCCCTTGGGAGTTACAACTCTTTCCACAATAACGTCTACAGGGACTCCATCATTGTCTGCT
GCATCAATTCCTGCACCAGCATGTTCGCAGGATTTGTTATCTTCTCCATCGTGGGCTTCATGGCCCATGTCACCAAGAGATCCATCGCTGATGTGGCGGCCTCAGGCCCCGGGCTGGCGTTCCTGGCA
TACCCAGAGGCAGTGACACAGCTGCCCATCTCTCCCCTCTGGGCCATCCTCTTCTTCTCCATGCTGCTCATGCTGGGCATTGACAGCCAGTTCTGCACCGTGGAGGGCTTCATCACTGCCCTGGTGGA
CGAGTATCCGAGGCTGCTCCGCAACCGCAGGGAGCTCTTCATCGCTGCCGTCTGCATCGTCTCCTACCTGATCGGCCTCTCCAACATCACCCAGGGGGGCATTTATGTCTTCAAACTCTTTGATTACT
ACTCTGCCAGTGGCATGAGCCTGCTGTTCCTCGTGTTCTTTGAATGTGTCTCCATTTCCTGGTTTTATGGTGTCAACCGATTCTATGACAACATCCAAGAGATGGTCGGCTCCAGGCCTTGCATCTGG
TGGAAGCTCTGCTGGTCCTTCTTCACCCCCATCATTGTGGCGGGTGTGTTCATTTTCAGTGCTGTGCAGATGACCCCTCTCACCATGGGAAGCTACGTTTTCCCCAAGTGGGGCCAGGGTGTGGGCTG
GCTCATGGCCCTGTCTTCCATGGTCCTCATCCCCGGATACATGGCCTACATGTTCCTCACCCTAAAGGGCTCCCTGAAGCAGCGCATCCAGGTCATGATTCAGCCCAGCGAAGACATTGTTCGCCCCG
AGAATGGCCCGGAGCAGCCTCAGGCCAGCGGCTCGGCCAGCAAAGAGGCCTACATTTAGGGGTGCGGAGCGGCTCGCCCACCCACACTCTCGCCCCCACCCTGGCTGCACACGACCACCACTTGATGT
CTGAAGATACCGTCTAGCTCAACCTACCTCGAGTGGCGAGTCCAGACACCATCACCATGCAAAGAGAGGGAGGTGGGGACAGTCACACCCCCGTGGGCCCCCACTATGGGTGAAGATGCTCGATGGCT
CCGGCACCTGCGGGCTGGTGACCTTTTTAATCCGGGCCCCATAAGCATCAAGCAGTTGGCCTGTGTGACCGCTGCGCTAGATCATTTTTATTCCGCCAGCGAGTGCGAAGTGCTCCTGGCTTTTAGTT
GCATTCCTGACTGTTCTCTTACTGCCGAAACCCATGACTGTTACCTTGGACTTCGGTTCGGTCAGAACGCTGCTCTGTGCACGTGAAGAGGGCAGTTTGTATAATGGGCATTTCTAGGGAGAGCTCAC
TCTTAAGAGCAGGGAGCCAGGAGAGCTCTTTCAGTTTTTGGTTTTTTCCTTCCCGAGGCAGCTCGACAGCACCCCCCCCACCCCGCACCCCGCCCCCGGTTCGTATCACCAGAGCTGCTTTTTCTCAA
GCCATCCGCATAGTGTCCTATTCCCCAGCCACTCGGCTGAATGGGCATCTCTGCACTAAGCTTTCCCAACCCCCACTCCTGGCCAGGGCCTTCTGATTGTGCCCGGCCGGCAGCGATCCTTCCAGACC
GGTCCTGCTCCTGGGAAAACTGCCACAAGCACAACTGACTTTGCTATCACCGTTTTGTGGGGCCTGAGATCCCGCTGGGGAAATTCCCTAATAGGAGGAGCCCCAGTTTCTCTTAGGCTGCCAGGTTT
TCCAGAGCACAGAACCGTTGCAGAGCAAATGTTATCTGTCTCCCACACTGCACCCCAGTCACGGCTGCTGCCTTCAGAGTTCCCACTGTGGCTCAGCAGGTTAAGAACCCTGTCTGTGAGGACCCAGG
TACCCTCCGTGGCCTAGCTCAGTGGGTTAAGGATCTGAGGTTGCCTCAAGCTGCAGTGCAGGTTGCAGATGCAGCAAGGATCCGGCGTCGCTGTGGCTGTGGCTGTGGCTAGGCTGCGATTCCACCCT
TAGCGTGGGAACTTCGTTTTGCCACAGGTGCAGCCCTAAAAAGAAAAAAAAAAAGTTTGCTGCCTTCCCCCTTCTCTGAAATTCTTGAGCAGGAATCCCCTCACTGCCACTAAAATACCCAGCCCCAG
TAACTGAGGAGCTAGTGTTCATCCGCCCCCACGTGCTTCCAAAATTAAAACTGCTTCGGTGAGAAGTAGTGTTCTTTCCTTTTTGAAATTGGGCTCCACAGTGGTGGTGGCAAATCGGGTGAAGACTT
TCTTGCAAGCTTCAGTAACTCAGCGTTTCTCACTTGCCAGGAACATGGGTTCCCATGTAGCAAATCCTACGTCGTGCCCTGTACTCCTTAGCTAGTTAACTCACGAACTGTGTTTTACGACTAATCCT
TAATAACCATGGTAAATAACTGTGACTGTGGGGTTTTTAATCTGTCATTCTCATCTGAAAGTGACCAGCATACCAGTTCTTGCAATAAGGTTTTATCCTCAGATTATTAAGCACATTATTGTAGAAGA
AAAAAGAGTCTGTGTACACATATAAATGCACACATATGTACATTCATCCTCACCCGTGGTACATAAAGTCTCATTTGATATTGTGTAGGAAACCTAAAACCTTTTCCTGAAGTCATCTGTAAAATAGT
CTCATTCTTAAGGCATCGTGAATGCCATCTGGTGAATCCAGGATCGAAATGCATACGTATTGTTAACTTATAGGGTTTAGAACAAAGGAACCCTTCACTGTCTCATGGTCCCACCCCCCATTCTTTGT
GTGAATTCCTTTAGAATAAGGGCAGGAAGAATTCTAACTTTCTCTTTGTTCTTCAGCCTGAGATGGAGAACAAGTCTTCCGAAGACAAAGGCAGTGTGGTATTTAATGTTTGTAAGCAAATCTAAGTG
AGATGTTTGGCAAGAAATCCCTTAACTGATTTCCATCCAAACCTAATATAGCACAATATTATGTGTCGTAAACTTACTGTGAGAACTGTGAATATGTGTTCCTTTTTTAGTATTTGCCCTGGGGAGGG
AGAGATATTGTATTATCATATATGCTTTTTTTTTTTGCAATAAGGATTTATTCTCAGAACACCAAGTAAATCTATCTCTATATTAAAAAATATATGTAATATATACATATTCAAACTATATACAGAGC
CTGTTTTAAGAAAAATTACAGTATTATTTAGTAAAATTATCTGTTCTATGGACCAAATGTAAAATATTTATAAATGAAGATGCATTTTAAATGTCTATAAATGGTGTCATAACTAGAGCACGGGCGTT
ATGTACGTTTCTAAGAATATAGAGGAAAAGTAATAAAGGTTCTATGATATACAAT

hide sequence

RefSeq Acc Id:

XM_021069341 ⟹ XP_020925000

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	67,157,145 - 67,199,085 (+)	NCBI

Sequence:

show sequence

CCGGGAAGCGCGGGGGGCCAGGAGAACTCACATGAGGAGCTCGAGAATCAGCCCATTCCTGGTC
GCGGGCCGCTTGGTTTCTAGTTGGCGCTCAATTCTGCTGGAGCCGTCGAAGCGCCGGGTTCATCCCCAGAGGGTGGTGGAGGACCCTGGAAAGAATGATAGCGTTTGGGGAGCTGTGCGCCACTTCGT
CTGGGGTCAGCTGCACCAAGGTCGAGCTGTGCCCCCGTTCTATTCTCTGAGGGCTAAGGGAGCAGGCGACTGGGGAACGGGACACCTCCTTTCTGTCTCTCAAGAAATGTTGCCTAGAAAGCACACCA
TGGCTTGGGCTTGAGCTGAGCGCACAGAAGCTCGCGCTCGCACTCTTCCCACTCCTTTCCTGGAGGAATATGGGGTGAGCGGGGTCCTCCTGAAGGTTTGAGGACTGTCTCCTTGCTACCGCGGGGAC
CATGCTCACTTTCTTGCCTTATGTCCTGGCATTTACTTTCTGGGAATTGGAAAGGGGGGCAACTCTGCTCCGCGCCATTTCCGCGGGGCAGTGACCAGCAGGTCTTCATACGTGGTCCCTTTGTGCCC
ACTCATCTCTACAGCTGGCACCCACAGATGTCGCATTCTAGCTTAGCTTGCTTCTCAGACAAGGAACTCAGACCCAGCAGCCTGGCTCGGAGGCTCTGAGCTAATCTCCCCAAAATAGACGTGAACCC
CAAGGAGAAAATTGGATTTTTAAAAGCCCAGTGGCAATGCTGTTTCTTCCCAATGTGGGGCATGAGCTCTCCCTCCCTCTCCCAGAAAGCTCAGCCTCATCTTCATGAAGAGCTGGGGAGGGGGGGAA
GGCACTGAATAAAATGGCTCCTGAGCTTTGATGACACCCCCAAATCAGCGACTCTATCAGGCTGAGTGGACTTTGAGGTTGACCTTCATTTTTCTGTGACACACAAGGCTCTCACCTGGGGTTGCAGG
CGGAGCTGCTGTGGAGCTGACCCAGCACAGAAAACCATCAGGGTGACCTTGAGCTGCAAAGCTGCTGTCCACGTGGACTGGAGCTGACATCGCGCGTCCATCTGCCAGGACCCCTGCATCCAGACTCC
GAGACATGGCAACCAACAGCAGCAAGGTGGCCGATGGGCAAATCTCCACGGAGGTCAGCGAGGTCCCTGTGGCCAACGACAAGCCCAAAACCCTGGTGGTCAAGGTGCAGAAGAAGGCGGCGGACCTT
CCGGACCGGGACACATGGAAGGGCCGCTTCGACTTCCTCATGTCCTGCGTGGGCTATGCCATTGGTCTGGGCAATGTCTGGAGATTCCCTTATCTCTGCGGGAAGAACGGTGGTGGAGCCTTCCTGAT
CCCCTACTTCCTGACGCTCATCTTTGCGGGTGTCCCGCTCTTCCTGCTGGAGTGCTCCCTGGGCCAGTACACCTCCATCGGGGGCCTGGGGGTGTGGAAGCTGGCTCCCATGTTCAAGGGTGTGGGCC
TCGCCGCCGCTGTGCTCTCGTTCTGGCTGAACATCTACTACATCGTCATCATCTCCTGGGCCATCTACTACCTGTACAACTCCTTCACCACAACGCTGCCATGGAAACAGTGTGACAACCCCTGGAAT
ACAGACCGCTGCTTCTCCAACTACAGCATCGTCAATACCACCAACATGACCAGCGCCGTGGTGGAGTTCTGGGAGCGCAACATGCACCAGATGACAGACGGACTGGATAAGCCGGGTCAGATCCGCTG
GCCTCTGGCCATCACCCTGGCCATCGCCTGGATCCTTGTGTATTTCTGTATCTGGAAGGGTGTTGGCTGGACTGGAAAGGTGGTCTACTTCTCGGCCACATATCCCTACATCATGCTGATCATCCTGT
TCTTCCGTGGGGTGACACTGCCTGGTGCCAAGGAAGGCATCCTCTTCTATATCACACCCAACTTCCGCAAGCTGTCAGACTCTGAGGTGTGGCTGGATGCAGCTACTCAGATCTTCTTCTCATACGGA
CTGGGTCTGGGGTCCCTGATTGCCCTTGGGAGTTACAACTCTTTCCACAATAACGTCTACAGGGACTCCATCATTGTCTGCTGCATCAATTCCTGCACCAGCATGTTCGCAGGATTTGTTATCTTCTC
CATCGTGGGCTTCATGGCCCATGTCACCAAGAGATCCATCGCTGATGTGGCGGCCTCAGGCCCCGGGCTGGCGTTCCTGGCATACCCAGAGGCAGTGACACAGCTGCCCATCTCTCCCCTCTGGGCCA
TCCTCTTCTTCTCCATGCTGCTCATGCTGGGCATTGACAGCCAGTTCTGCACCGTGGAGGGCTTCATCACTGCCCTGGTGGACGAGTATCCGAGGCTGCTCCGCAACCGCAGGGAGCTCTTCATCGCT
GCCGTCTGCATCGTCTCCTACCTGATCGGCCTCTCCAACATCACCCAGGGGGGCATTTATGTCTTCAAACTCTTTGATTACTACTCTGCCAGTGGCATGAGCCTGCTGTTCCTCGTGTTCTTTGAATG
TGTCTCCATTTCCTGGTTTTATGGTGTCAACCGATTCTATGACAACATCCAAGAGATGGTCGGCTCCAGGCCTTGCATCTGGTGGAAGCTCTGCTGGTCCTTCTTCACCCCCATCATTGTGGCGGGTG
TGTTCATTTTCAGTGCTGTGCAGATGACCCCTCTCACCATGGGAAGCTACGTTTTCCCCAAGTGGGGCCAGGGTGTGGGCTGGCTCATGGCCCTGTCTTCCATGGTCCTCATCCCCGGATACATGGCC
TACATGTTCCTCACCCTAAAGGGCTCCCTGAAGCAGCGCATCCAGGTCATGATTCAGCCCAGCGAAGACATTGTTCGCCCCGAGAATGGCCCGGAGCAGCCTCAGGCCAGCGGCTCGGCCAGCAAAGA
GGCCTACATTTAGGGGTGCGGAGCGGCTCGCCCACCCACACTCTCGCCCCCACCCTGGCTGCACACGACCACCACTTGATGTCTGAAGATACCGTCTAGCTCAACCTACCTCGAGTGGCGAGTCCAGA
CACCATCACCATGCAAAGAGAGGGAGGTGGGGACAGTCACACCCCCGTGGGCCCCCACTATGGGTGAAGATGCTCGATGGCTCCGGCACCTGCGGGCTGGTGACCTTTTTAATCCGGGCCCCATAAGC
ATCAAGCAGTTGGCCTGTGTGACCGCTGCGCTAGATCATTTTTATTCCGCCAGCGAGTGCGAAGTGCTCCTGGCTTTTAGTTGCATTCCTGACTGTTCTCTTACTGCCGAAACCCATGACTGTTACCT
TGGACTTCGGTTCGGTCAGAACGCTGCTCTGTGCACGTGAAGAGGGCAGTTTGTATAATGGGCATTTCTAGGGAGAGCTCACTCTTAAGAGCAGGGAGCCAGGAGAGCTCTTTCAGTTTTTGGTTTTT
TCCTTCCCGAGGCAGCTCGACAGCACCCCCCCCACCCCGCACCCCGCCCCCGGTTCGTATCACCAGAGCTGCTTTTTCTCAAGCCATCCGCATAGTGTCCTATTCCCCAGCCACTCGGCTGAATGGGC
ATCTCTGCACTAAGCTTTCCCAACCCCCACTCCTGGCCAGGGCCTTCTGATTGTGCCCGGCCGGCAGCGATCCTTCCAGACCGGTCCTGCTCCTGGGAAAACTGCCACAAGCACAACTGACTTTGCTA
TCACCGTTTTGTGGGGCCTGAGATCCCGCTGGGGAAATTCCCTAATAGGAGGAGCCCCAGTTTCTCTTAGGCTGCCAGGTTTTCCAGAGCACAGAACCGTTGCAGAGCAAATGTTATCTGTCTCCCAC
ACTGCACCCCAGTCACGGCTGCTGCCTTCAGAGTTCCCACTGTGGCTCAGCAGGTTAAGAACCCTGTCTGTGAGGACCCAGGTACCCTCCGTGGCCTAGCTCAGTGGGTTAAGGATCTGAGGTTGCCT
CAAGCTGCAGTGCAGGTTGCAGATGCAGCAAGGATCCGGCGTCGCTGTGGCTGTGGCTGTGGCTAGGCTGCGATTCCACCCTTAGCGTGGGAACTTCGTTTTGCCACAGGTGCAGCCCTAAAAAGAAA
AAAAAAAAGTTTGCTGCCTTCCCCCTTCTCTGAAATTCTTGAGCAGGAATCCCCTCACTGCCACTAAAATACCCAGCCCCAGTAACTGAGGAGCTAGTGTTCATCCGCCCCCACGTGCTTCCAAAATT
AAAACTGCTTCGGTGAGAAGTAGTGTTCTTTCCTTTTTGAAATTGGGCTCCACAGTGGTGGTGGCAAATCGGGTGAAGACTTTCTTGCAAGCTTCAGTAACTCAGCGTTTCTCACTTGCCAGGAACAT
GGGTTCCCATGTAGCAAATCCTACGTCGTGCCCTGTACTCCTTAGCTAGTTAACTCACGAACTGTGTTTTACGACTAATCCTTAATAACCATGGTAAATAACTGTGACTGTGGGGTTTTTAATCTGTC
ATTCTCATCTGAAAGTGACCAGCATACCAGTTCTTGCAATAAGGTTTTATCCTCAGATTATTAAGCACATTATTGTAGAAGAAAAAAGAGTCTGTGTACACATATAAATGCACACATATGTACATTCA
TCCTCACCCGTGGTACATAAAGTCTCATTTGATATTGTGTAGGAAACCTAAAACCTTTTCCTGAAGTCATCTGTAAAATAGTCTCATTCTTAAGGCATCGTGAATGCCATCTGGTGAATCCAGGATCG
AAATGCATACGTATTGTTAACTTATAGGGTTTAGAACAAAGGAACCCTTCACTGTCTCATGGTCCCACCCCCCATTCTTTGTGTGAATTCCTTTAGAATAAGGGCAGGAAGAATTCTAACTTTCTCTT
TGTTCTTCAGCCTGAGATGGAGAACAAGTCTTCCGAAGACAAAGGCAGTGTGGTATTTAATGTTTGTAAGCAAATCTAAGTGAGATGTTTGGCAAGAAATCCCTTAACTGATTTCCATCCAAACCTAA
TATAGCACAATATTATGTGTCGTAAACTTACTGTGAGAACTGTGAATATGTGTTCCTTTTTTAGTATTTGCCCTGGGGAGGGAGAGATATTGTATTATCATATATGCTTTTTTTTTTTGCAATAAGGA
TTTATTCTCAGAACACCAAGTAAATCTATCTCTATATTAAAAAATATATGTAATATATACATATTCAAACTATATACAGAGCCTGTTTTAAGAAAAATTACAGTATTATTTAGTAAAATTATCTGTTC
TATGGACCAAATGTAAAATATTTATAAATGAAGATGCATTTTAAATGTCTATAAATGGTGTCATAACTAGAGCACGGGCGTTATGTACGTTTCTAAGAATATAGAGGAAAAGTAATAAAGGTTCTATG
AT

hide sequence


Protein RefSeqs	XP_020924999	(Get FASTA)	NCBI Sequence Viewer
	XP_020925000	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000012336.3
	ENSSSCP00000034131
	ENSSSCP00000034131.3
	ENSSSCP00000069117.1
	ENSSSCP00000070313.1
	ENSSSCP00000078672.1
	ENSSSCP00000081081.1
	ENSSSCP00015012401.1
	ENSSSCP00015012428.1
	ENSSSCP00015012563.1
	ENSSSCP00015012594.1
	ENSSSCP00025046941.1
	ENSSSCP00025046955.1
	ENSSSCP00025046974.1
	ENSSSCP00025046988.1
	ENSSSCP00030028713.1
	ENSSSCP00030028725.1
	ENSSSCP00030028738.1
	ENSSSCP00030028752.1
	ENSSSCP00035047660.1
	ENSSSCP00035047671.1
	ENSSSCP00035047689.1
	ENSSSCP00035047701.1
	ENSSSCP00040023553.1
	ENSSSCP00040023611.1
	ENSSSCP00040023718.1
	ENSSSCP00045001787.1
	ENSSSCP00045001797.1
	ENSSSCP00045001806.1
	ENSSSCP00045001814.1
	ENSSSCP00050002559.1
	ENSSSCP00050002563.1
	ENSSSCP00050002573.1
	ENSSSCP00050002574.1
	ENSSSCP00055013233.1
	ENSSSCP00055013310.1
	ENSSSCP00055013412.1
	ENSSSCP00060010080.1
	ENSSSCP00060010081.1
	ENSSSCP00060010086.1
	ENSSSCP00060010089.1
	ENSSSCP00065026659.1
	ENSSSCP00065026663.1
	ENSSSCP00065026668.1
	ENSSSCP00065026673.1
	ENSSSCP00070030014.1
	ENSSSCP00070030033.1
	ENSSSCP00070030045.1
	ENSSSCP00070030070.1

RefSeq Acc Id:

XP_020924999 ⟸ XM_021069340

- UniProtKB:

A0A4X1ULA7 (UniProtKB/TrEMBL), A0A480ERZ1 (UniProtKB/TrEMBL), A0A286ZR77 (UniProtKB/TrEMBL), A0A8D1C9X1 (UniProtKB/TrEMBL), F1SQA4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATNSSKVADGQISTEVSEVPVANDKPKTLVVKVQKKAADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLA
AAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFSNYSIVNTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFF
RGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAIL
FFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVF
IFSAVQMTPLTMGSYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGSLKQRIQVMIQPSEDIVRPENGPEQPQASGSASKEAYI

hide sequence

RefSeq Acc Id:

XP_020925000 ⟸ XM_021069341

- UniProtKB:

A0A4X1ULA7 (UniProtKB/TrEMBL), A0A480ERZ1 (UniProtKB/TrEMBL), A0A286ZR77 (UniProtKB/TrEMBL), A0A8D1C9X1 (UniProtKB/TrEMBL), F1SQA4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATNSSKVADGQISTEVSEVPVANDKPKTLVVKVQKKAADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLA
AAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFSNYSIVNTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFF
RGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAIL
FFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVF
IFSAVQMTPLTMGSYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGSLKQRIQVMIQPSEDIVRPENGPEQPQASGSASKEAYI

hide sequence

Ensembl Acc Id:

ENSSSCP00000034131 ⟸ ENSSSCT00000050804

Ensembl Acc Id:

ENSSSCP00000069117 ⟸ ENSSSCT00000070749

Ensembl Acc Id:

ENSSSCP00000012336 ⟸ ENSSSCT00000012669

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000011577	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015022263	UniProtKB/TrEMBL
	ENSSSCG00025075936	UniProtKB/TrEMBL
	ENSSSCG00030044712	UniProtKB/TrEMBL
	ENSSSCG00035079899	UniProtKB/TrEMBL
	ENSSSCG00040041359	UniProtKB/TrEMBL
	ENSSSCG00045001754	UniProtKB/TrEMBL
	ENSSSCG00050004222	UniProtKB/TrEMBL
	ENSSSCG00055008484	UniProtKB/TrEMBL
	ENSSSCG00060017848	UniProtKB/TrEMBL
	ENSSSCG00065044896	UniProtKB/TrEMBL
	ENSSSCG00070018130	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000012669.5	UniProtKB/TrEMBL
	ENSSSCT00000050804	ENTREZGENE
	ENSSSCT00000050804.3	UniProtKB/TrEMBL
	ENSSSCT00000070749.2	UniProtKB/TrEMBL
	ENSSSCT00000073399.2	UniProtKB/TrEMBL
	ENSSSCT00000098414.1	UniProtKB/TrEMBL
	ENSSSCT00000101606.1	UniProtKB/TrEMBL
	ENSSSCT00015031394.1	UniProtKB/TrEMBL
	ENSSSCT00015031460.1	UniProtKB/TrEMBL
	ENSSSCT00015031713.1	UniProtKB/TrEMBL
	ENSSSCT00015031793.1	UniProtKB/TrEMBL
	ENSSSCT00025105194.1	UniProtKB/TrEMBL
	ENSSSCT00025105209.1	UniProtKB/TrEMBL
	ENSSSCT00025105232.1	UniProtKB/TrEMBL
	ENSSSCT00025105247.1	UniProtKB/TrEMBL
	ENSSSCT00030062792.1	UniProtKB/TrEMBL
	ENSSSCT00030062817.1	UniProtKB/TrEMBL
	ENSSSCT00030062846.1	UniProtKB/TrEMBL
	ENSSSCT00030062869.1	UniProtKB/TrEMBL
	ENSSSCT00035109690.1	UniProtKB/TrEMBL
	ENSSSCT00035109715.1	UniProtKB/TrEMBL
	ENSSSCT00035109739.1	UniProtKB/TrEMBL
	ENSSSCT00035109761.1	UniProtKB/TrEMBL
	ENSSSCT00040056627.1	UniProtKB/TrEMBL
	ENSSSCT00040056796.1	UniProtKB/TrEMBL
	ENSSSCT00040057036.1	UniProtKB/TrEMBL
	ENSSSCT00045002837.1	UniProtKB/TrEMBL
	ENSSSCT00045002851.1	UniProtKB/TrEMBL
	ENSSSCT00045002864.1	UniProtKB/TrEMBL
	ENSSSCT00045002879.1	UniProtKB/TrEMBL
	ENSSSCT00050005894.1	UniProtKB/TrEMBL
	ENSSSCT00050005899.1	UniProtKB/TrEMBL
	ENSSSCT00050005911.1	UniProtKB/TrEMBL
	ENSSSCT00050005917.1	UniProtKB/TrEMBL
	ENSSSCT00055016772.1	UniProtKB/TrEMBL
	ENSSSCT00055016865.1	UniProtKB/TrEMBL
	ENSSSCT00055016989.1	UniProtKB/TrEMBL
	ENSSSCT00060024035.1	UniProtKB/TrEMBL
	ENSSSCT00060024039.1	UniProtKB/TrEMBL
	ENSSSCT00060024053.1	UniProtKB/TrEMBL
	ENSSSCT00060024058.1	UniProtKB/TrEMBL
	ENSSSCT00065061511.1	UniProtKB/TrEMBL
	ENSSSCT00065061518.1	UniProtKB/TrEMBL
	ENSSSCT00065061526.1	UniProtKB/TrEMBL
	ENSSSCT00065061535.1	UniProtKB/TrEMBL
	ENSSSCT00070035926.1	UniProtKB/TrEMBL
	ENSSSCT00070035953.1	UniProtKB/TrEMBL
	ENSSSCT00070035968.1	UniProtKB/TrEMBL
	ENSSSCT00070035996.1	UniProtKB/TrEMBL
InterPro	Na/ntran_symport	UniProtKB/TrEMBL
	Na/ntran_symport_GABA_GAT1	UniProtKB/TrEMBL
	SNS_sf	UniProtKB/TrEMBL
NCBI Gene	SLC6A1	ENTREZGENE
PANTHER	PTHR11616	UniProtKB/TrEMBL
	SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 1	UniProtKB/TrEMBL
Pfam	SNF	UniProtKB/TrEMBL
PRINTS	GAT1TRNSPORT	UniProtKB/TrEMBL
	NANEUSMPORT	UniProtKB/TrEMBL
PROSITE	NA_NEUROTRAN_SYMP_1	UniProtKB/TrEMBL
	NA_NEUROTRAN_SYMP_2	UniProtKB/TrEMBL
	NA_NEUROTRAN_SYMP_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF161070	UniProtKB/TrEMBL
UniProt	A0A286ZR77	ENTREZGENE, UniProtKB/TrEMBL
	A0A480ERZ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1ULA7	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UNH8_PIG	UniProtKB/TrEMBL
	A0A4X1UPH4_PIG	UniProtKB/TrEMBL
	A0A5G2QZJ3_PIG	UniProtKB/TrEMBL
	A0A8D1BE76_PIG	UniProtKB/TrEMBL
	A0A8D1C9X1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FHF8_PIG	UniProtKB/TrEMBL
	A0A8W4FR95_PIG	UniProtKB/TrEMBL
	F1SQA4	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A5G2RE67	UniProtKB/TrEMBL
VGNC ID	VGNC:93153	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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