STARD4 (StAR related lipid transfer domain containing 4) - Rat Genome Database

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Gene: STARD4 (StAR related lipid transfer domain containing 4) Sus scrofa
Analyze
Symbol: STARD4
Name: StAR related lipid transfer domain containing 4
RGD ID: 13912554
Description: ENCODES a protein that exhibits cholesterol binding (inferred); cholesterol transfer activity (inferred); lipid binding (inferred); INVOLVED IN cholesterol import (inferred); cholesterol transport involved in cholesterol storage (inferred); intracellular cholesterol transport (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: StAR-related lipid transfer (START) domain containing 4; stAR-related lipid transfer protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,236,255 - 116,257,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,830,521 - 120,845,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
STARD4Pigfamilial adenomatous polyposis 1  ISOSTARD4 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial adenomatous polyposis 1ClinVarPMID:17963004 more ...
STARD4PigHereditary Neoplastic Syndromes  ISOSTARD4 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary Cancer SyndromeClinVarPMID:18487285 more ...
STARD4PigHereditary Neoplastic Syndromes  ISOSTARD4 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:17963004 more ...
STARD4PigNeurodevelopmental Disorders  ISOSTARD4 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disordersClinVarPMID:25741868


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
STARD4Pigdeoxynivalenol increases expressionEXP 6480464deoxynivalenol results in increased expression of STARD4 mRNACTDPMID:35307453


Biological Process
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
STARD4Pigcholesterol import involved_inIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigcholesterol import involved_inIBAPANTHER:PTN002931313 and UniProtKB:Q96DR4150520179 GO_CentralGO_REF:0000033
STARD4Pigcholesterol transport involved in cholesterol storage involved_inIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigcholesterol transport involved in cholesterol storage involved_inIBAPANTHER:PTN002931313 and UniProtKB:Q96DR4150520179 GO_CentralGO_REF:0000033
STARD4Pigintracellular cholesterol transport involved_inIEAInterPro:IPR042555150520179 InterProGO_REF:0000002
STARD4Pigintracellular cholesterol transport involved_inIBAPANTHER:PTN002931313 and UniProtKB:Q96DR4150520179 GO_CentralGO_REF:0000033
STARD4Pigintracellular cholesterol transport involved_inIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigpositive regulation of bile acid biosynthetic process involved_inIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigpositive regulation of cholesterol metabolic process involved_inIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
1 to 9 of 9 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
STARD4Pigcytoplasm located_inIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigcytoplasmic vesicle part_ofIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigcytosol located_inISOStard4 (Mus musculus)9068941 PMID:21767660CACAOPMID:21767660
STARD4Pigcytosol is_active_inIBAMGI:2156764 and PANTHER:PTN002931313150520179 GO_CentralGO_REF:0000033
STARD4Pigendoplasmic reticulum located_inISOStard4 (Mus musculus)9068941 PMID:21767660CACAOPMID:21767660
STARD4Pigendoplasmic reticulum is_active_inIBAMGI:2156764 and PANTHER:PTN002931313150520179 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
STARD4Pigcholesterol binding enablesIEAInterPro:IPR042555150520179 InterProGO_REF:0000002
STARD4Pigcholesterol binding enablesIBAPANTHER:PTN002931313 and UniProtKB:Q96DR4150520179 GO_CentralGO_REF:0000033
STARD4Pigcholesterol binding enablesIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigcholesterol transfer activity enablesIEAUniProtKB:Q96DR4 and ensembl:ENSP00000296632150520179 EnsemblGO_REF:0000107
STARD4Pigcholesterol transfer activity enablesIBAPANTHER:PTN002931313 and UniProtKB:Q96DR4150520179 GO_CentralGO_REF:0000033
STARD4Piglipid binding enablesIEAInterPro:IPR002913150520179 InterProGO_REF:0000002
STARD4Pigprotein binding enablesISOUniProtKB:P08247 more ...9068941 PMID:32296183IntActPMID:32296183

PMID:30032202  



STARD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,236,255 - 116,257,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,830,521 - 120,845,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385111,496,033 - 111,512,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5111,496,033 - 111,512,590 (-)EnsemblGRCh38hg38GRCh38
GRCh375110,831,731 - 110,848,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365110,861,921 - 110,876,056 (-)NCBINCBI36Build 36hg18NCBI36
Build 345110,861,920 - 110,876,056NCBI
Celera5106,779,623 - 106,793,758 (-)NCBICelera
Cytogenetic Map5q22.1NCBI
HuRef5106,012,693 - 106,026,827 (-)NCBIHuRef
CHM1_15110,267,316 - 110,281,451 (-)NCBICHM1_1
T2T-CHM13v2.05112,006,333 - 112,022,835 (-)NCBIT2T-CHM13v2.0
Stard4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,332,191 - 33,346,937 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1833,332,408 - 33,346,915 (-)EnsemblGRCm39 Ensembl
GRCm381833,199,138 - 33,213,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,199,355 - 33,213,862 (-)EnsemblGRCm38mm10GRCm38
MGSCv371833,361,075 - 33,373,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361833,326,232 - 33,338,627 (-)NCBIMGSCv36mm8
Celera1833,649,468 - 33,662,093 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.18NCBI
Stard4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,088,831 - 25,104,172 (-)NCBIGRCr8
mRatBN7.21824,814,683 - 24,830,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,817,107 - 24,830,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1824,944,469 - 24,957,390 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,708,747 - 25,721,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,040,134 - 25,053,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,982,210 - 25,997,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,984,638 - 25,997,555 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01825,699,344 - 25,712,261 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41825,638,433 - 25,653,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11825,669,531 - 25,740,871 (-)NCBI
Celera1824,564,822 - 24,577,739 (-)NCBICelera
Cytogenetic Map18p12NCBI
Stard4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,638,399 - 3,648,402 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554183,637,390 - 3,652,054 (+)NCBIChiLan1.0ChiLan1.0
STARD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,758,190 - 106,774,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15104,912,071 - 104,927,995 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05106,855,990 - 106,873,384 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,658,743 - 112,675,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5112,657,516 - 112,675,165 (-)Ensemblpanpan1.1panPan2
STARD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131,154,358 - 1,171,248 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31,154,358 - 1,170,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha32,557,697 - 2,575,098 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.031,000,098 - 1,017,508 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl31,000,155 - 1,016,904 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13989,528 - 1,006,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03985,874 - 1,003,268 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031,149,674 - 1,167,056 (+)NCBIUU_Cfam_GSD_1.0
Stard4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213155,733,930 - 155,752,046 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365315,866,021 - 5,877,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365315,865,840 - 5,877,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12314,842,152 - 14,854,675 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2314,842,286 - 14,854,702 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603463,619,410 - 63,636,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474329,282,558 - 29,293,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474329,278,327 - 29,298,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in STARD4
661 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000063681   ⟹   ENSSSCP00000031472
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,235,816 - 116,256,950 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000074198   ⟹   ENSSSCP00000060461
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,241,949 - 116,256,953 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000074639   ⟹   ENSSSCP00000060485
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,236,255 - 116,257,041 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000080432   ⟹   ENSSSCP00000072280
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,241,866 - 116,256,953 (-)Ensembl
RefSeq Acc Id: NM_001143726   ⟹   NP_001137198
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12116,240,061 - 116,256,985 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077159   ⟹   XP_020932818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020932818   ⟸   XM_021077159
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TWK0 (UniProtKB/TrEMBL),   A0A5G2Q8F3 (UniProtKB/TrEMBL),   A0A8D1XUY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137198   ⟸   NM_001143726
- UniProtKB: B8XSJ3 (UniProtKB/TrEMBL),   A0A8D1ULI0 (UniProtKB/TrEMBL),   A0A8D0UZK0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000060461   ⟸   ENSSSCT00000074198
Ensembl Acc Id: ENSSSCP00000060485   ⟸   ENSSSCT00000074639
Ensembl Acc Id: ENSSSCP00000072280   ⟸   ENSSSCT00000080432
START



1 to 40 of 77 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000031518 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015033146 UniProtKB/TrEMBL
  ENSSSCG00025068053 UniProtKB/TrEMBL
  ENSSSCG00030055803 UniProtKB/TrEMBL
  ENSSSCG00035018336 UniProtKB/TrEMBL
  ENSSSCG00040071298 UniProtKB/TrEMBL
  ENSSSCG00045023344 UniProtKB/TrEMBL
  ENSSSCG00050059886 UniProtKB/TrEMBL
  ENSSSCG00055025855 UniProtKB/TrEMBL
  ENSSSCG00060019424 UniProtKB/TrEMBL
  ENSSSCG00065016573 UniProtKB/TrEMBL
  ENSSSCG00070013437 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000074198.2 UniProtKB/TrEMBL
  ENSSSCT00000074639 ENTREZGENE
  ENSSSCT00000074639.2 UniProtKB/TrEMBL
  ENSSSCT00000080432.2 UniProtKB/TrEMBL
  ENSSSCT00015044240.1 UniProtKB/TrEMBL
  ENSSSCT00015044337.1 UniProtKB/TrEMBL
  ENSSSCT00015044393.1 UniProtKB/TrEMBL
  ENSSSCT00025093481.1 UniProtKB/TrEMBL
  ENSSSCT00025093616.1 UniProtKB/TrEMBL
  ENSSSCT00025093724.1 UniProtKB/TrEMBL
  ENSSSCT00025093863.1 UniProtKB/TrEMBL
  ENSSSCT00030077798.1 UniProtKB/TrEMBL
  ENSSSCT00030077817.1 UniProtKB/TrEMBL
  ENSSSCT00030077828.1 UniProtKB/TrEMBL
  ENSSSCT00035023674.1 UniProtKB/TrEMBL
  ENSSSCT00035023681.1 UniProtKB/TrEMBL
  ENSSSCT00035023682.1 UniProtKB/TrEMBL
  ENSSSCT00040098080.1 UniProtKB/TrEMBL
  ENSSSCT00040098147.1 UniProtKB/TrEMBL
  ENSSSCT00040098208.1 UniProtKB/TrEMBL
  ENSSSCT00045039931.1 UniProtKB/TrEMBL
  ENSSSCT00045039983.1 UniProtKB/TrEMBL
  ENSSSCT00045040039.1 UniProtKB/TrEMBL
  ENSSSCT00050081587.1 UniProtKB/TrEMBL
  ENSSSCT00050081592.1 UniProtKB/TrEMBL
  ENSSSCT00050081597.1 UniProtKB/TrEMBL
  ENSSSCT00055051204.1 UniProtKB/TrEMBL
  ENSSSCT00055051257.1 UniProtKB/TrEMBL
1 to 40 of 77 rows