STARD4 (StAR related lipid transfer domain containing 4) - Rat Genome Database

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Gene: STARD4 (StAR related lipid transfer domain containing 4) Sus scrofa
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Symbol: STARD4
Name: StAR related lipid transfer domain containing 4
RGD ID: 13912554
Description: ENCODES a protein that exhibits cholesterol binding (inferred); INVOLVED IN cholesterol esterification (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: StAR-related lipid transfer (START) domain containing 4; stAR-related lipid transfer protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,235,816 - 116,257,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,830,521 - 120,845,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytoplasmic vesicle  (IEA,ISO)
cytosol  (IBA,ISO)
endoplasmic reticulum  (IBA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
STARD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,235,816 - 116,257,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,830,521 - 120,845,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5111,496,033 - 111,512,590 (-)EnsemblGRCh38hg38GRCh38
GRCh385111,491,422 - 111,512,567 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375110,831,731 - 110,848,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365110,861,921 - 110,876,056 (-)NCBINCBI36hg18NCBI36
Build 345110,861,920 - 110,876,056NCBI
Celera5106,779,623 - 106,793,758 (-)NCBI
Cytogenetic Map5q22.1NCBI
HuRef5106,012,693 - 106,026,827 (-)NCBIHuRef
CHM1_15110,267,316 - 110,281,451 (-)NCBICHM1_1
Stard4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,332,191 - 33,346,937 (-)NCBIGRCm39mm39
GRCm39 Ensembl1833,332,408 - 33,346,915 (-)Ensembl
GRCm381833,199,138 - 33,213,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,199,355 - 33,213,862 (-)EnsemblGRCm38mm10GRCm38
MGSCv371833,361,075 - 33,373,470 (-)NCBIGRCm37mm9NCBIm37
MGSCv361833,326,232 - 33,338,627 (-)NCBImm8
Celera1833,649,468 - 33,662,093 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.18NCBI
Stard4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21824,814,683 - 24,830,024 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1824,817,107 - 24,830,024 (-)Ensembl
Rnor_6.01825,982,210 - 25,997,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,984,638 - 25,997,555 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01825,699,344 - 25,712,261 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41825,638,433 - 25,653,958 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11825,669,531 - 25,740,871 (-)NCBI
Celera1824,564,822 - 24,577,739 (-)NCBICelera
Cytogenetic Map18p12NCBI
Stard4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,638,399 - 3,648,402 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554183,637,390 - 3,652,054 (+)NCBIChiLan1.0ChiLan1.0
STARD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15112,658,743 - 112,675,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5112,657,516 - 112,675,165 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05106,855,990 - 106,873,384 (-)NCBIMhudiblu_PPA_v0panPan3
STARD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131,154,358 - 1,171,248 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31,154,358 - 1,170,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha32,557,697 - 2,575,098 (+)NCBI
ROS_Cfam_1.031,000,098 - 1,017,508 (+)NCBI
UMICH_Zoey_3.13989,528 - 1,006,913 (+)NCBI
UNSW_CanFamBas_1.03985,874 - 1,003,268 (+)NCBI
UU_Cfam_GSD_1.031,149,674 - 1,167,056 (+)NCBI
Stard4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213155,733,930 - 155,752,046 (+)NCBI
SpeTri2.0NW_0049365315,865,840 - 5,877,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12314,842,152 - 14,854,675 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2314,842,286 - 14,854,702 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603463,619,410 - 63,636,606 (+)NCBIVero_WHO_p1.0
Stard4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474329,278,327 - 29,298,050 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 1 2 1
Low 6 4 3 5 22 3 2
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000063681   ⟹   ENSSSCP00000031472
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,235,816 - 116,256,950 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074198   ⟹   ENSSSCP00000060461
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,242,051 - 116,256,950 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074639   ⟹   ENSSSCP00000060485
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,236,251 - 116,257,041 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000080432   ⟹   ENSSSCP00000072280
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,241,866 - 116,256,950 (-)Ensembl
RefSeq Acc Id: NM_001143726   ⟹   NP_001137198
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12116,240,061 - 116,256,985 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077159   ⟹   XP_020932818
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001137198 (Get FASTA)   NCBI Sequence Viewer  
  XP_020932818 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACK36979 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020932818   ⟸   XM_021077159
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001137198   ⟸   NM_001143726
- UniProtKB: B8XSJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000060461   ⟸   ENSSSCT00000074198
RefSeq Acc Id: ENSSSCP00000060485   ⟸   ENSSSCT00000074639
RefSeq Acc Id: ENSSSCP00000072280   ⟸   ENSSSCT00000080432
RefSeq Acc Id: ENSSSCP00000031472   ⟸   ENSSSCT00000063681
Protein Domains
START


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031518 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070013437 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000031472 UniProtKB/TrEMBL
  ENSSSCP00000060461 UniProtKB/TrEMBL
  ENSSSCP00000060485 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072280 UniProtKB/TrEMBL
  ENSSSCP00070021774 UniProtKB/TrEMBL
  ENSSSCP00070021784 UniProtKB/TrEMBL
  ENSSSCP00070021786 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000063681 UniProtKB/TrEMBL
  ENSSSCT00000074198 UniProtKB/TrEMBL
  ENSSSCT00000074639 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000080432 UniProtKB/TrEMBL
  ENSSSCT00070026229 UniProtKB/TrEMBL
  ENSSSCT00070026240 UniProtKB/TrEMBL
  ENSSSCT00070026244 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/TrEMBL
InterPro StarD4 UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
KEGG Report ssc:100233203 UniProtKB/TrEMBL
NCBI Gene STARD4 ENTREZGENE
PANTHER PTHR47006 UniProtKB/TrEMBL
Pfam START UniProtKB/TrEMBL
PROSITE START UniProtKB/TrEMBL
SMART START UniProtKB/TrEMBL
UniProt A0A286ZJ15_PIG UniProtKB/TrEMBL
  A0A4X1TWK0_PIG UniProtKB/TrEMBL
  A0A4X1TWL0_PIG UniProtKB/TrEMBL
  A0A4X1TZ65_PIG UniProtKB/TrEMBL
  A0A5G2Q8F3_PIG UniProtKB/TrEMBL
  A0A5G2QEK3_PIG UniProtKB/TrEMBL
  A0A5G2RJY0_PIG UniProtKB/TrEMBL
  B8XSJ3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93534 ENTREZGENE