Stard4 (StAR related lipid transfer domain containing 4) - Rat Genome Database

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Gene: Stard4 (StAR related lipid transfer domain containing 4) Chinchilla lanigera
Analyze
Symbol: Stard4
Name: StAR related lipid transfer domain containing 4
RGD ID: 8763831
Description: ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN cholesterol import (ortholog); cholesterol transport involved in cholesterol storage (ortholog); intracellular cholesterol transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: StAR-related lipid transfer (START) domain containing 4; stAR-related lipid transfer protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,638,399 - 3,648,402 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554183,637,390 - 3,652,054 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Stard4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,638,399 - 3,648,402 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554183,637,390 - 3,652,054 (+)NCBIChiLan1.0ChiLan1.0
STARD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385111,496,033 - 111,512,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5111,496,033 - 111,512,590 (-)EnsemblGRCh38hg38GRCh38
GRCh375110,831,731 - 110,848,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365110,861,921 - 110,876,056 (-)NCBINCBI36Build 36hg18NCBI36
Build 345110,861,920 - 110,876,056NCBI
Celera5106,779,623 - 106,793,758 (-)NCBICelera
Cytogenetic Map5q22.1NCBI
HuRef5106,012,693 - 106,026,827 (-)NCBIHuRef
CHM1_15110,267,316 - 110,281,451 (-)NCBICHM1_1
T2T-CHM13v2.05112,006,333 - 112,022,835 (-)NCBIT2T-CHM13v2.0
Stard4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,332,191 - 33,346,937 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1833,332,408 - 33,346,915 (-)EnsemblGRCm39 Ensembl
GRCm381833,199,138 - 33,213,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,199,355 - 33,213,862 (-)EnsemblGRCm38mm10GRCm38
MGSCv371833,361,075 - 33,373,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361833,326,232 - 33,338,627 (-)NCBIMGSCv36mm8
Celera1833,649,468 - 33,662,093 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.18NCBI
Stard4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,088,831 - 25,104,172 (-)NCBIGRCr8
mRatBN7.21824,814,683 - 24,830,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,817,107 - 24,830,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1824,944,469 - 24,957,390 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,708,747 - 25,721,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,040,134 - 25,053,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,982,210 - 25,997,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,984,638 - 25,997,555 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01825,699,344 - 25,712,261 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41825,638,433 - 25,653,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11825,669,531 - 25,740,871 (-)NCBI
Celera1824,564,822 - 24,577,739 (-)NCBICelera
Cytogenetic Map18p12NCBI
STARD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,758,190 - 106,774,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15104,912,071 - 104,927,995 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05106,855,990 - 106,873,384 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,658,743 - 112,675,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5112,657,516 - 112,675,165 (-)Ensemblpanpan1.1panPan2
STARD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131,154,358 - 1,171,248 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31,154,358 - 1,170,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha32,557,697 - 2,575,098 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.031,000,098 - 1,017,508 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl31,000,155 - 1,016,904 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13989,528 - 1,006,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03985,874 - 1,003,268 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031,149,674 - 1,167,056 (+)NCBIUU_Cfam_GSD_1.0
Stard4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213155,733,930 - 155,752,046 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365315,866,021 - 5,877,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365315,865,840 - 5,877,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,236,255 - 116,257,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,830,521 - 120,845,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12314,842,152 - 14,854,675 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2314,842,286 - 14,854,702 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603463,619,410 - 63,636,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474329,282,558 - 29,293,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474329,278,327 - 29,298,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008079   ⟹   ENSCLAP00000007959
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554183,638,399 - 3,648,402 (+)Ensembl
RefSeq Acc Id: XM_005382163   ⟹   XP_005382220
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554183,637,409 - 3,652,054 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382165   ⟹   XP_005382222
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554183,637,390 - 3,652,054 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513071   ⟹   XP_013368525
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554183,637,426 - 3,652,054 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382220 (Get FASTA)   NCBI Sequence Viewer  
  XP_005382222 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368525 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007959
  ENSCLAP00000007959.1
Reference Protein Sequences
RefSeq Acc Id: XP_005382220   ⟸   XM_005382163
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005382222   ⟸   XM_005382165
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V0A5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368525   ⟸   XM_013513071
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000007959   ⟸   ENSCLAT00000008079
Protein Domains
START


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005584 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008079 ENTREZGENE
  ENSCLAT00000008079.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/TrEMBL
InterPro StarD4 UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
NCBI Gene Stard4 ENTREZGENE
PANTHER PTHR47006 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 4 UniProtKB/TrEMBL
Pfam START UniProtKB/TrEMBL
PROSITE START UniProtKB/TrEMBL
SMART START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
UniProt A0A8C2V0A5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Stard4  StAR related lipid transfer domain containing 4    StAR-related lipid transfer (START) domain containing 4  Symbol and/or name change 5135510 APPROVED