STARD4 (StAR related lipid transfer domain containing 4) - Rat Genome Database

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Gene: STARD4 (StAR related lipid transfer domain containing 4) Pan paniscus
Analyze
Symbol: STARD4
Name: StAR related lipid transfer domain containing 4
RGD ID: 12039292
Description: ENCODES a protein that exhibits cholesterol binding (inferred); cholesterol transfer activity (inferred); INVOLVED IN cholesterol import (inferred); cholesterol transport involved in cholesterol storage (inferred); intracellular cholesterol transport (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stAR-related lipid transfer protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,758,190 - 106,774,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15104,912,071 - 104,927,995 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05106,855,990 - 106,873,384 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,658,743 - 112,675,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5112,657,516 - 112,675,165 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
STARD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,758,190 - 106,774,231 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15104,912,071 - 104,927,995 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05106,855,990 - 106,873,384 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,658,743 - 112,675,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5112,657,516 - 112,675,165 (-)Ensemblpanpan1.1panPan2
STARD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385111,496,033 - 111,512,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5111,496,033 - 111,512,590 (-)EnsemblGRCh38hg38GRCh38
GRCh375110,831,731 - 110,848,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365110,861,921 - 110,876,056 (-)NCBINCBI36Build 36hg18NCBI36
Build 345110,861,920 - 110,876,056NCBI
Celera5106,779,623 - 106,793,758 (-)NCBICelera
Cytogenetic Map5q22.1NCBI
HuRef5106,012,693 - 106,026,827 (-)NCBIHuRef
CHM1_15110,267,316 - 110,281,451 (-)NCBICHM1_1
T2T-CHM13v2.05112,006,333 - 112,022,835 (-)NCBIT2T-CHM13v2.0
Stard4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,332,191 - 33,346,937 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1833,332,408 - 33,346,915 (-)EnsemblGRCm39 Ensembl
GRCm381833,199,138 - 33,213,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,199,355 - 33,213,862 (-)EnsemblGRCm38mm10GRCm38
MGSCv371833,361,075 - 33,373,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361833,326,232 - 33,338,627 (-)NCBIMGSCv36mm8
Celera1833,649,468 - 33,662,093 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.18NCBI
Stard4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,088,831 - 25,104,172 (-)NCBIGRCr8
mRatBN7.21824,814,683 - 24,830,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,817,107 - 24,830,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1824,944,469 - 24,957,390 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,708,747 - 25,721,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,040,134 - 25,053,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,982,210 - 25,997,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,984,638 - 25,997,555 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01825,699,344 - 25,712,261 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41825,638,433 - 25,653,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11825,669,531 - 25,740,871 (-)NCBI
Celera1824,564,822 - 24,577,739 (-)NCBICelera
Cytogenetic Map18p12NCBI
Stard4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,638,399 - 3,648,402 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554183,637,390 - 3,652,054 (+)NCBIChiLan1.0ChiLan1.0
STARD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131,154,358 - 1,171,248 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31,154,358 - 1,170,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha32,557,697 - 2,575,098 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.031,000,098 - 1,017,508 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl31,000,155 - 1,016,904 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13989,528 - 1,006,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03985,874 - 1,003,268 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031,149,674 - 1,167,056 (+)NCBIUU_Cfam_GSD_1.0
Stard4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213155,733,930 - 155,752,046 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365315,866,021 - 5,877,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365315,865,840 - 5,877,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,236,255 - 116,257,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,235,821 - 116,257,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,830,521 - 120,845,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12314,842,152 - 14,854,675 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2314,842,286 - 14,854,702 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603463,619,410 - 63,636,606 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474329,282,558 - 29,293,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474329,278,327 - 29,298,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056193   ⟹   ENSPPAP00000033318
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5112,657,516 - 112,669,972 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056196   ⟹   ENSPPAP00000033321
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5112,658,743 - 112,675,165 (-)Ensembl
RefSeq Acc Id: XM_003826748   ⟹   XP_003826796
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24106,758,190 - 106,774,225 (-)NCBI
NHGRI_mPanPan15104,912,071 - 104,927,995 (-)NCBI
Mhudiblu_PPA_v05106,855,990 - 106,873,379 (-)NCBI
PanPan1.15112,658,743 - 112,675,165 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008952100   ⟹   XP_008950348
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24106,758,190 - 106,774,231 (-)NCBI
NHGRI_mPanPan15104,912,071 - 104,927,988 (-)NCBI
Mhudiblu_PPA_v05106,855,990 - 106,873,380 (-)NCBI
PanPan1.15112,658,743 - 112,675,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014344979   ⟹   XP_014200465
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24106,758,190 - 106,774,179 (-)NCBI
NHGRI_mPanPan15104,912,071 - 104,927,867 (-)NCBI
Mhudiblu_PPA_v05106,855,990 - 106,873,378 (-)NCBI
PanPan1.15112,658,743 - 112,675,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063604590   ⟹   XP_063460660
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24106,758,190 - 106,774,185 (-)NCBI
RefSeq Acc Id: XM_063604591   ⟹   XP_063460661
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24106,758,190 - 106,774,228 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003826796   ⟸   XM_003826748
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BV40 (UniProtKB/TrEMBL),   A0A2R9BUG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008950348   ⟸   XM_008952100
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BV40 (UniProtKB/TrEMBL),   A0A2R9BUG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_014200465   ⟸   XM_014344979
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000033321   ⟸   ENSPPAT00000056196
RefSeq Acc Id: ENSPPAP00000033318   ⟸   ENSPPAT00000056193
RefSeq Acc Id: XP_063460661   ⟸   XM_063604591
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063460660   ⟸   XM_063604590
- Peptide Label: isoform X3
Protein Domains
START


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039524 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056193.1 UniProtKB/TrEMBL
  ENSPPAT00000056196.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/TrEMBL
InterPro StarD4 UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
KEGG Report pps:100969591 UniProtKB/TrEMBL
NCBI Gene STARD4 ENTREZGENE
PANTHER PTHR47006 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 4 UniProtKB/TrEMBL
Pfam START UniProtKB/TrEMBL
PROSITE START UniProtKB/TrEMBL
SMART START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
UniProt A0A2R9BUG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BV40 ENTREZGENE, UniProtKB/TrEMBL