RAB11FIP3 (RAB11 family interacting protein 3) - Rat Genome Database

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Gene: RAB11FIP3 (RAB11 family interacting protein 3) Sus scrofa
Analyze
Symbol: RAB11FIP3
Name: RAB11 family interacting protein 3
RGD ID: 13862616
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN early endosome to recycling endosome transport (ortholog); Golgi to plasma membrane protein transport (ortholog); positive regulation of cilium assembly (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); idiopathic generalized epilepsy (ortholog); FOUND IN postsynaptic recycling endosome membrane (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RAB11 family interacting protein 3 (class II); rab11 family-interacting protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,211,684 - 41,285,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,211,683 - 41,284,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,300,071 - 41,308,378 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB11FIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,211,684 - 41,285,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,211,683 - 41,284,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,300,071 - 41,308,378 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816425,649 - 523,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16425,649 - 523,011 (+)EnsemblGRCh38hg38GRCh38
GRCh3716475,649 - 573,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616415,669 - 512,482 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416415,668 - 512,481NCBI
Celera16676,072 - 772,867 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16394,074 - 493,813 (+)NCBIHuRef
CHM1_116475,612 - 572,415 (+)NCBICHM1_1
T2T-CHM13v2.016421,839 - 526,088 (+)NCBIT2T-CHM13v2.0
Rab11fip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,208,010 - 26,289,010 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,208,010 - 26,288,529 (-)EnsemblGRCm39 Ensembl
GRCm381725,989,036 - 26,070,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,989,036 - 26,069,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,125,981 - 26,206,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,716,515 - 25,797,155 (-)NCBIMGSCv36mm8
Celera1726,522,181 - 26,603,138 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.05NCBI
Rab11fip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,507,151 - 15,591,173 (-)NCBIGRCr8
mRatBN7.21015,002,650 - 15,086,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,002,926 - 15,118,479 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01015,348,356 - 15,433,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,349,888 - 15,381,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,162,587 - 15,246,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,248,355 - 15,332,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,249,035 - 15,318,838 (-)NCBI
Celera1014,670,109 - 14,755,010 (-)NCBICelera
Cytogenetic Map10q12NCBI
Rab11fip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,674,867 - 16,736,921 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218655,285 - 762,195 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,443,945 - 4,546,504 (+)NCBINHGRI_mPanPan1
PanPan1.116497,005 - 512,487 (-)NCBIpanpan1.1PanPan1.1panPan2
RAB11FIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,020,673 - 40,100,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,021,805 - 40,047,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,283,374 - 41,363,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,361,997 - 40,441,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,050,471 - 40,130,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,010,625 - 40,090,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,489,876 - 40,569,548 (-)NCBIUU_Cfam_GSD_1.0
Rab11fip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,372,898 - 112,438,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501467,171 - 535,964 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501470,307 - 535,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15358,951 - 445,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606830,715,524 - 30,813,892 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249131,258,743 - 1,340,349 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB11FIP3
731 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 2 23 3 1
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000060055   ⟹   ENSSSCP00000034870
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl341,211,684 - 41,285,196 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090958   ⟹   ENSSSCP00000059668
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl341,211,684 - 41,285,502 (-)Ensembl
RefSeq Acc Id: XM_021086921   ⟹   XP_020942580
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1341,211,683 - 41,284,998 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020942580 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000034870.3
  ENSSSCP00000059668.2
  ENSSSCP00025015722.1
  ENSSSCP00030039250.1
  ENSSSCP00035042419.1
Reference Protein Sequences
RefSeq Acc Id: XP_020942580   ⟸   XM_021086921
- UniProtKB: A0A480KYB2 (UniProtKB/TrEMBL),   A0A8D0RNE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000034870   ⟸   ENSSSCT00000060055
RefSeq Acc Id: ENSSSCP00000059668   ⟸   ENSSSCT00000090958
Protein Domains
EF-hand   FIP-RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035854 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025027628 UniProtKB/TrEMBL
  ENSSSCG00030060938 UniProtKB/TrEMBL
  ENSSSCG00035073749 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000060055.3 UniProtKB/TrEMBL
  ENSSSCT00000090958.2 UniProtKB/TrEMBL
  ENSSSCT00025037495.1 UniProtKB/TrEMBL
  ENSSSCT00030085199.1 UniProtKB/TrEMBL
  ENSSSCT00035100004.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2440 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
NCBI Gene RAB11FIP3 ENTREZGENE
PANTHER PTHR15726:SF6 UniProtKB/TrEMBL
  RAB11-FAMILY INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  RBD-FIP UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  FIP_RBD UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A286ZTQ8_PIG UniProtKB/TrEMBL
  A0A480KYB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2Q6N8_PIG UniProtKB/TrEMBL
  A0A8D0RNE9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92040 ENTREZGENE