Rab11fip3 (RAB11 family interacting protein 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rab11fip3 (RAB11 family interacting protein 3) Chinchilla lanigera
Analyze
Symbol: Rab11fip3
Name: RAB11 family interacting protein 3
RGD ID: 8774859
Description: ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN early endosome to recycling endosome transport (ortholog); endocytic recycling (ortholog); Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cleavage furrow (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RAB11 family interacting protein 3 (class II); rab11 family-interacting protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,674,867 - 16,736,921 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rab11fip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,674,867 - 16,736,921 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816425,649 - 523,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16425,649 - 523,011 (+)EnsemblGRCh38hg38GRCh38
GRCh3716475,649 - 573,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616415,669 - 512,482 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416415,668 - 512,481NCBI
Celera16676,072 - 772,867 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16394,074 - 493,813 (+)NCBIHuRef
CHM1_116475,612 - 572,415 (+)NCBICHM1_1
T2T-CHM13v2.016421,839 - 526,088 (+)NCBIT2T-CHM13v2.0
Rab11fip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,208,010 - 26,289,010 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,208,010 - 26,288,529 (-)EnsemblGRCm39 Ensembl
GRCm381725,989,036 - 26,070,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,989,036 - 26,069,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,125,981 - 26,206,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,716,515 - 25,797,155 (-)NCBIMGSCv36mm8
Celera1726,522,181 - 26,603,138 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.05NCBI
Rab11fip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,507,151 - 15,591,173 (-)NCBIGRCr8
mRatBN7.21015,002,650 - 15,086,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,002,926 - 15,118,479 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01015,348,356 - 15,433,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,349,888 - 15,381,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,162,587 - 15,246,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,248,355 - 15,332,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,249,035 - 15,318,838 (-)NCBI
Celera1014,670,109 - 14,755,010 (-)NCBICelera
Cytogenetic Map10q12NCBI
RAB11FIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218655,285 - 762,195 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,443,945 - 4,546,504 (+)NCBINHGRI_mPanPan1
PanPan1.116497,005 - 512,487 (-)NCBIpanpan1.1PanPan1.1panPan2
RAB11FIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,020,673 - 40,100,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,021,805 - 40,047,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,283,374 - 41,363,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,361,997 - 40,441,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,050,471 - 40,130,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,010,625 - 40,090,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,489,876 - 40,569,548 (-)NCBIUU_Cfam_GSD_1.0
Rab11fip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,372,898 - 112,438,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501467,171 - 535,964 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501470,307 - 535,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,211,684 - 41,285,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,211,683 - 41,284,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,300,071 - 41,308,378 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15358,951 - 445,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606830,715,524 - 30,813,892 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249131,258,743 - 1,340,349 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence


Ensembl Acc Id: ENSCLAT00000020754   ⟹   ENSCLAP00000020556
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544216,674,867 - 16,703,342 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000020755   ⟹   ENSCLAP00000020557
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544216,678,136 - 16,736,921 (-)Ensembl
RefSeq Acc Id: XM_013517818   ⟹   XP_013373272
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517819   ⟹   XP_013373273
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373272 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373273 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020556.1
  ENSCLAP00000020557.1
RefSeq Acc Id: XP_013373273   ⟸   XM_013517819
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013373272   ⟸   XM_013517818
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000020557   ⟸   ENSCLAT00000020755
Ensembl Acc Id: ENSCLAP00000020556   ⟸   ENSCLAT00000020754
Protein Domains
FIP-RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014078 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020754.1 UniProtKB/TrEMBL
  ENSCLAT00000020755.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2440 UniProtKB/TrEMBL
InterPro FIP-RBD_C_sf UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
  Rab11-interacting_regulator UniProtKB/TrEMBL
NCBI Gene Rab11fip3 ENTREZGENE
PANTHER PTHR15726:SF6 UniProtKB/TrEMBL
  RAB11-FAMILY INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam RBD-FIP UniProtKB/TrEMBL
PROSITE FIP_RBD UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
UniProt A0A8C2VWK2_CHILA UniProtKB/TrEMBL
  A0A8C2VZ14_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Rab11fip3  RAB11 family interacting protein 3    RAB11 family interacting protein 3 (class II)  Symbol and/or name change 5135510 APPROVED