Rab11fip3 (RAB11 family interacting protein 3 (class II)) - Rat Genome Database

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Gene: Rab11fip3 (RAB11 family interacting protein 3 (class II)) Mus musculus
Analyze
Symbol: Rab11fip3
Name: RAB11 family interacting protein 3 (class II)
RGD ID: 1551905
MGI Page MGI
Description: Predicted to enable several functions, including dynein light intermediate chain binding activity; protein homodimerization activity; and small GTPase binding activity. Acts upstream of or within protein localization to cilium. Located in membrane. Is active in postsynaptic recycling endosome membrane. Is expressed in several structures, including gonad; gut; immune system; liver; and retina. Orthologous to human RAB11FIP3 (RAB11 family interacting protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cart1; cytoplasmic adaptor for RAR and TR; D030060O14Rik; FIP3; FIP3-Rab11; MGC47508; mKIAA0665; rab11 family-interacting protein 3; Rab11-; Rab11-FIP3; RIKEN cDNA D030060O14 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,208,010 - 26,289,010 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,208,010 - 26,288,529 (-)EnsemblGRCm39 Ensembl
GRCm381725,989,036 - 26,070,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,989,036 - 26,069,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,125,981 - 26,206,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,716,515 - 25,797,155 (-)NCBIMGSCv36mm8
Celera1726,522,181 - 26,603,138 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12465718   PMID:12477932   PMID:12520002   PMID:14519200   PMID:14610273   PMID:15601896   PMID:15883036  
PMID:16141072   PMID:16141073   PMID:17089410   PMID:19075228   PMID:20736163   PMID:21873635   PMID:24576489   PMID:25673879   PMID:27622210   PMID:30295969   PMID:31970777   PMID:32325033  
PMID:38355793  


Genomics

Comparative Map Data
Rab11fip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,208,010 - 26,289,010 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,208,010 - 26,288,529 (-)EnsemblGRCm39 Ensembl
GRCm381725,989,036 - 26,070,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,989,036 - 26,069,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,125,981 - 26,206,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,716,515 - 25,797,155 (-)NCBIMGSCv36mm8
Celera1726,522,181 - 26,603,138 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.05NCBI
RAB11FIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816425,649 - 523,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16425,649 - 523,011 (+)EnsemblGRCh38hg38GRCh38
GRCh3716475,649 - 573,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616415,669 - 512,482 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416415,668 - 512,481NCBI
Celera16676,072 - 772,867 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16394,074 - 493,813 (+)NCBIHuRef
CHM1_116475,612 - 572,415 (+)NCBICHM1_1
T2T-CHM13v2.016421,839 - 526,088 (+)NCBIT2T-CHM13v2.0
Rab11fip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,507,151 - 15,591,173 (-)NCBIGRCr8
mRatBN7.21015,002,650 - 15,086,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,002,926 - 15,118,479 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01015,348,356 - 15,433,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,349,888 - 15,381,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,162,587 - 15,246,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,248,355 - 15,332,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,249,035 - 15,318,838 (-)NCBI
Celera1014,670,109 - 14,755,010 (-)NCBICelera
Cytogenetic Map10q12NCBI
Rab11fip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,674,867 - 16,736,921 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218655,285 - 762,195 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,443,945 - 4,546,504 (+)NCBINHGRI_mPanPan1
PanPan1.116497,005 - 512,487 (-)NCBIpanpan1.1PanPan1.1panPan2
RAB11FIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,020,673 - 40,100,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,021,805 - 40,047,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,283,374 - 41,363,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,361,997 - 40,441,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,050,471 - 40,130,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,010,625 - 40,090,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,489,876 - 40,569,548 (-)NCBIUU_Cfam_GSD_1.0
Rab11fip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,372,898 - 112,438,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501467,171 - 535,964 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501470,307 - 535,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,211,684 - 41,285,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,211,683 - 41,284,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,300,071 - 41,308,378 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15358,951 - 445,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606830,715,524 - 30,813,892 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249131,258,743 - 1,340,349 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab11fip3
3185 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4260
Count of miRNA genes:758
Interacting mature miRNAs:992
Transcripts:ENSMUST00000118828, ENSMUST00000120691, ENSMUST00000122103, ENSMUST00000126306, ENSMUST00000144587, ENSMUST00000148021
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse

Markers in Region
BB447517  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,989,110 - 25,989,195UniSTSGRCm38
MGSCv371726,126,055 - 26,126,140UniSTSGRCm37
Celera1726,522,255 - 26,522,340UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17323.48UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001162868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001162869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_876466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB093257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE853781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM114891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA328414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB840427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF170100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF747684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000118828   ⟹   ENSMUSP00000113048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,208,010 - 26,240,834 (-)Ensembl
GRCm38.p6 Ensembl1725,989,036 - 26,021,860 (-)Ensembl
Ensembl Acc Id: ENSMUST00000120691   ⟹   ENSMUSP00000112875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,208,019 - 26,288,529 (-)Ensembl
GRCm38.p6 Ensembl1725,989,045 - 26,069,555 (-)Ensembl
Ensembl Acc Id: ENSMUST00000122103   ⟹   ENSMUSP00000113521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,208,010 - 26,288,519 (-)Ensembl
GRCm38.p6 Ensembl1725,989,036 - 26,069,545 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,255,245 - 26,288,209 (-)Ensembl
GRCm38.p6 Ensembl1726,036,271 - 26,069,235 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,222,625 - 26,240,792 (-)Ensembl
GRCm38.p6 Ensembl1726,003,651 - 26,021,818 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148021   ⟹   ENSMUSP00000119626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,208,016 - 26,237,434 (-)Ensembl
GRCm38.p6 Ensembl1725,989,042 - 26,018,460 (-)Ensembl
RefSeq Acc Id: NM_001162868   ⟹   NP_001156340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,208,010 - 26,288,492 (-)NCBI
GRCm381725,989,036 - 26,069,518 (-)NCBI
MGSCv371726,125,981 - 26,206,122 (-)RGD
Celera1726,522,181 - 26,603,138 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001162869   ⟹   NP_001156341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,208,010 - 26,288,492 (-)NCBI
GRCm381725,989,036 - 26,069,518 (-)NCBI
MGSCv371726,125,981 - 26,206,122 (-)RGD
Celera1726,522,181 - 26,603,138 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_153140   ⟹   NP_694780
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,208,010 - 26,240,834 (-)NCBI
GRCm381725,989,036 - 26,021,860 (-)NCBI
MGSCv371726,125,981 - 26,206,122 (-)RGD
Celera1726,522,181 - 26,603,138 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011246362   ⟹   XP_011244664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,221,358 - 26,289,010 (-)NCBI
GRCm381726,002,384 - 26,070,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160465   ⟹   XP_036016358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,208,010 - 26,289,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160466   ⟹   XP_036016359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,208,010 - 26,289,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160467   ⟹   XP_036016360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,208,010 - 26,289,010 (-)NCBI
Sequence:
RefSeq Acc Id: XR_876466
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,227,829 - 26,289,010 (-)NCBI
GRCm381726,013,774 - 26,070,077 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001156340   ⟸   NM_001162868
- Peptide Label: isoform b
- UniProtKB: Q8JZT3 (UniProtKB/Swiss-Prot),   Q8CHD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156341   ⟸   NM_001162869
- Peptide Label: isoform a
- UniProtKB: Q8CHD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_694780   ⟸   NM_153140
- Peptide Label: isoform c
- UniProtKB: Q8CHD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011244664   ⟸   XM_011246362
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSMUSP00000113048   ⟸   ENSMUST00000118828
Ensembl Acc Id: ENSMUSP00000112875   ⟸   ENSMUST00000120691
Ensembl Acc Id: ENSMUSP00000119626   ⟸   ENSMUST00000148021
Ensembl Acc Id: ENSMUSP00000113521   ⟸   ENSMUST00000122103
RefSeq Acc Id: XP_036016360   ⟸   XM_036160467
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016359   ⟸   XM_036160466
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016358   ⟸   XM_036160465
- Peptide Label: isoform X1
Protein Domains
EF-hand   FIP-RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CHD8-F1-model_v2 AlphaFold Q8CHD8 1-1047 view protein structure

Promoters
RGD ID:13675214
Promoter ID:EPDNEW_M21756
Type:initiation region
Name:Rab11fip3_1
Description:Mus musculus RAB11 family interacting protein 3 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21757  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381726,021,860 - 26,021,920EPDNEW
RGD ID:13675218
Promoter ID:EPDNEW_M21757
Type:initiation region
Name:Rab11fip3_2
Description:Mus musculus RAB11 family interacting protein 3 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21756  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381726,069,228 - 26,069,288EPDNEW
RGD ID:6828545
Promoter ID:MM_KWN:22662
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000065634
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361726,155,034 - 26,155,534 (-)MPROMDB
RGD ID:6828562
Promoter ID:MM_KWN:22663
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000118828,   UC008BDF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361726,158,546 - 26,159,046 (-)MPROMDB
RGD ID:6828543
Promoter ID:MM_KWN:22665
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000120691,   ENSMUST00000122103,   OTTMUST00000065633
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361726,205,066 - 26,206,677 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444431 AgrOrtholog
Ensembl Genes ENSMUSG00000037098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000118828 ENTREZGENE
  ENSMUST00000118828.8 UniProtKB/Swiss-Prot
  ENSMUST00000120691 ENTREZGENE
  ENSMUST00000120691.9 UniProtKB/Swiss-Prot
  ENSMUST00000122103 ENTREZGENE
  ENSMUST00000122103.9 UniProtKB/Swiss-Prot
  ENSMUST00000148021.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.2440 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  FIP-RBD_C_sf UniProtKB/Swiss-Prot
  Rab-bd_FIP-RBD UniProtKB/Swiss-Prot
  Rab11-interacting_regulator UniProtKB/Swiss-Prot
KEGG Report mmu:215445 UniProtKB/Swiss-Prot
MGD MGI:2444431 ENTREZGENE
NCBI Gene Rab11fip3 ENTREZGENE
PANTHER PTHR15726:SF6 UniProtKB/Swiss-Prot
  RAB11-FAMILY INTERACTING PROTEIN UniProtKB/Swiss-Prot
Pfam EF-hand_7 UniProtKB/Swiss-Prot
  RBD-FIP UniProtKB/Swiss-Prot
PhenoGen Rab11fip3 PhenoGen
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot
  FIP_RBD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF144270 UniProtKB/Swiss-Prot
  SSF47473 UniProtKB/Swiss-Prot
UniProt Q8CHD8 ENTREZGENE
  Q8JZT3 ENTREZGENE
  RFIP3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8JZT3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Rab11fip3  RAB11 family interacting protein 3 (class II)  D030060O14Rik  RIKEN cDNA D030060O14 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 D030060O14Rik  RIKEN cDNA D030060O14 gene  Rab11fip3  RAB11 family interacting protein 3 (class II)  Symbol and/or name change 5135510 APPROVED