RAB11FIP3 (RAB11 family interacting protein 3) - Rat Genome Database

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Gene: RAB11FIP3 (RAB11 family interacting protein 3) Canis lupus familiaris
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Symbol: RAB11FIP3
Name: RAB11 family interacting protein 3
RGD ID: 12199712
Description: ENCODES a protein that exhibits calcium ion binding (inferred); dynein light intermediate chain binding (inferred); identical protein binding (inferred); INVOLVED IN protein localization to cilium (ortholog); ASSOCIATED WITH epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN postsynaptic recycling endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab11 family-interacting protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,020,673 - 40,100,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,021,805 - 40,047,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,283,374 - 41,363,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,361,997 - 40,441,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,050,471 - 40,130,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,010,625 - 40,090,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,489,876 - 40,569,548 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB11FIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,020,673 - 40,100,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,021,805 - 40,047,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,283,374 - 41,363,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,361,997 - 40,441,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,050,471 - 40,130,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,010,625 - 40,090,321 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,489,876 - 40,569,548 (-)NCBIUU_Cfam_GSD_1.0
RAB11FIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816425,649 - 523,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16425,649 - 523,011 (+)EnsemblGRCh38hg38GRCh38
GRCh3716475,649 - 573,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616415,669 - 512,482 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416415,668 - 512,481NCBI
Celera16676,072 - 772,867 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16394,074 - 493,813 (+)NCBIHuRef
CHM1_116475,612 - 572,415 (+)NCBICHM1_1
T2T-CHM13v2.016421,839 - 526,088 (+)NCBIT2T-CHM13v2.0
Rab11fip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,208,010 - 26,289,010 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,208,010 - 26,288,529 (-)EnsemblGRCm39 Ensembl
GRCm381725,989,036 - 26,070,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,989,036 - 26,069,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,125,981 - 26,206,122 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,716,515 - 25,797,155 (-)NCBIMGSCv36mm8
Celera1726,522,181 - 26,603,138 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.05NCBI
Rab11fip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,507,151 - 15,591,173 (-)NCBIGRCr8
mRatBN7.21015,002,650 - 15,086,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,002,926 - 15,118,479 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01015,348,356 - 15,433,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,349,888 - 15,381,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,162,587 - 15,246,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,248,355 - 15,332,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,249,035 - 15,318,838 (-)NCBI
Celera1014,670,109 - 14,755,010 (-)NCBICelera
Cytogenetic Map10q12NCBI
Rab11fip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,674,867 - 16,736,921 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218655,285 - 762,195 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,443,945 - 4,546,504 (+)NCBINHGRI_mPanPan1
PanPan1.116497,005 - 512,487 (-)NCBIpanpan1.1PanPan1.1panPan2
Rab11fip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,372,898 - 112,438,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501467,171 - 535,964 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501470,307 - 535,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,211,684 - 41,285,502 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,211,683 - 41,284,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,300,071 - 41,308,378 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15358,951 - 445,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606830,715,524 - 30,813,892 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249131,258,743 - 1,340,349 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB11FIP3
423 total Variants

Sequence


Ensembl Acc Id: ENSCAFT00000031276   ⟹   ENSCAFP00000029106
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl640,021,805 - 40,047,273 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050068   ⟹   ENSCAFP00845039257
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050142   ⟹   ENSCAFP00845039313
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050206   ⟹   ENSCAFP00845039364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl640,362,006 - 40,442,678 (-)Ensembl
RefSeq Acc Id: XM_014114448   ⟹   XP_013969923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1640,020,673 - 40,100,229 (-)NCBI
Dog10K_Boxer_Tasha641,283,374 - 41,363,061 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038480369   ⟹   XP_038336297
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1640,050,471 - 40,130,124 (-)NCBI
RefSeq Acc Id: XM_038538943   ⟹   XP_038394871
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0640,489,876 - 40,569,548 (-)NCBI
RefSeq Acc Id: XM_038602959   ⟹   XP_038458887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0640,010,625 - 40,090,321 (-)NCBI
RefSeq Acc Id: XM_038667657   ⟹   XP_038523585
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0640,361,997 - 40,441,721 (-)NCBI
RefSeq Acc Id: XP_013969923   ⟸   XM_014114448
- UniProtKB: A0A8C0K808 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000029106   ⟸   ENSCAFT00000031276
RefSeq Acc Id: XP_038336297   ⟸   XM_038480369
RefSeq Acc Id: XP_038458887   ⟸   XM_038602959
RefSeq Acc Id: XP_038523585   ⟸   XM_038667657
- UniProtKB: A0A8C0K808 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394871   ⟸   XM_038538943
- UniProtKB: A0A8C0K808 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845039313   ⟸   ENSCAFT00845050142
Ensembl Acc Id: ENSCAFP00845039364   ⟸   ENSCAFT00845050206
Ensembl Acc Id: ENSCAFP00845039257   ⟸   ENSCAFT00845050068
Protein Domains
EF-hand   FIP-RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019670 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030010370 UniProtKB/TrEMBL
  ENSCAFG00845028338 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031276.4 UniProtKB/TrEMBL
  ENSCAFT00000106335.1 UniProtKB/TrEMBL
  ENSCAFT00000108222.1 UniProtKB/TrEMBL
  ENSCAFT00000109919.1 UniProtKB/TrEMBL
  ENSCAFT00030019268.1 UniProtKB/TrEMBL
  ENSCAFT00030019354.1 UniProtKB/TrEMBL
  ENSCAFT00845050068.1 UniProtKB/TrEMBL
  ENSCAFT00845050142.1 UniProtKB/TrEMBL
  ENSCAFT00845050206.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2440 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
  Rab11-interacting_regulator UniProtKB/TrEMBL
NCBI Gene RAB11FIP3 ENTREZGENE
PANTHER PTHR15726:SF6 UniProtKB/TrEMBL
  RAB11-FAMILY INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam RBD-FIP UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  FIP_RBD UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0K808 ENTREZGENE
  A0A8C0MU56_CANLF UniProtKB/TrEMBL
  A0A8C0N767_CANLF UniProtKB/TrEMBL
  A0A8I3PY48_CANLF UniProtKB/TrEMBL
  A0A8I3PZW4_CANLF UniProtKB/TrEMBL
  A0A8I3QP48_CANLF UniProtKB/TrEMBL
  A0A8P0PFI8_CANLF UniProtKB/TrEMBL
  A0A8P0PPX4_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0PG08 UniProtKB/TrEMBL
  A0A8P0SNI8 UniProtKB/TrEMBL
VGNC ID VGNC:111678 ENTREZGENE