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Gene: RAB11FIP3 (RAB11 family interacting protein 3) Canis lupus familiaris

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Symbol:

RAB11FIP3

Name:

RAB11 family interacting protein 3

RGD ID:

12199712

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); dynein light intermediate chain binding (inferred); identical protein binding (inferred); INVOLVED IN early endosome to recycling endosome transport (ortholog); ASSOCIATED WITH epilepsy (ortholog); FOUND IN endocytic vesicle membrane (ortholog); Golgi membrane (ortholog); trans-Golgi network membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

rab11 family-interacting protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	40,020,673 - 40,100,229 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	40,021,805 - 40,047,273 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	41,283,374 - 41,363,061 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	40,361,997 - 40,441,721 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	40,361,997 - 40,442,678 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	40,050,471 - 40,130,124 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	40,010,625 - 40,090,321 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	40,489,876 - 40,569,548 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

early endosome to recycling endosome transport (IEA,ISO)

endocytic recycling (IBA,IEA)

Golgi to plasma membrane protein transport (IEA)

microtubule-based movement (IEA)

negative regulation of adiponectin secretion (IEA)

positive regulation of cilium assembly (IEA)

positive regulation of mitotic cytokinetic process (IEA)

protein localization to cilium (IEA)

protein localization to cleavage furrow (IEA)

regulation of cilium assembly (IEA)

regulation of cytokinesis (IBA,IEA)

regulation of early endosome to recycling endosome transport (IEA)

regulation of endocytic recycling (IEA)

regulation of protein localization to centrosome (IEA)

regulation of vesicle-mediated transport (IEA)

vesicle-mediated transport (IEA)

Cellular Component

bounding membrane of organelle (IEA)

centriolar satellite (IEA)

centrosome (IEA)

ciliary basal body (IEA)

cilium (IEA)

cleavage furrow (IBA,IEA)

cytoplasmic vesicle membrane (IEA)

endocytic vesicle (IBA)

endocytic vesicle membrane (IEA,ISO)

endosome (IEA)

Golgi apparatus (IEA)

Golgi membrane (IEA,ISO)

intercellular bridge (IEA)

membrane (IEA)

midbody (IBA,IEA)

mitochondrion (IEA)

nucleoplasm (IEA)

plasma membrane (IEA)

postsynaptic recycling endosome membrane (IEA)

recycling endosome (IEA)

recycling endosome membrane (IBA,IEA)

trans-Golgi network membrane (IEA,ISO)

Molecular Function

calcium ion binding (IEA)

dynein light intermediate chain binding (IEA)

identical protein binding (IEA)

metal ion binding (IEA)

molecular adaptor activity (IEA)

protein binding (ISO)

protein homodimerization activity (IEA)

protein-macromolecule adaptor activity (IEA)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RAB11FIP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	40,020,673 - 40,100,229 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	40,021,805 - 40,047,273 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	41,283,374 - 41,363,061 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	40,361,997 - 40,441,721 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	40,361,997 - 40,442,678 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	40,050,471 - 40,130,124 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	40,010,625 - 40,090,321 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	40,489,876 - 40,569,548 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

RAB11FIP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	425,649 - 523,011 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	425,593 - 523,012 (+)	Ensembl			hg38	GRCh38
GRCh37	16	475,649 - 573,011 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	415,669 - 512,482 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	415,668 - 512,481	NCBI
Celera	16	676,072 - 772,867 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	394,074 - 493,813 (+)	NCBI		HuRef
CHM1_1	16	475,612 - 572,415 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	421,839 - 526,088 (+)	NCBI		T2T-CHM13v2.0

Rab11fip3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	26,208,010 - 26,289,010 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	26,208,010 - 26,288,529 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	25,989,036 - 26,070,077 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	25,989,036 - 26,069,555 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	26,125,981 - 26,206,122 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	25,716,515 - 25,797,155 (-)	NCBI		MGSCv36	mm8
Celera	17	26,522,181 - 26,603,138 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	13.05	NCBI

Rab11fip3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	15,507,151 - 15,591,173 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	15,507,151 - 15,591,173 (-)	Ensembl				GRCr8
mRatBN7.2	10	15,002,650 - 15,086,382 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	15,002,926 - 15,118,479 (-)	Ensembl				mRatBN7.2
Rnor_6.0	10	15,348,356 - 15,433,384 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	15,349,888 - 15,381,691 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	15,162,587 - 15,246,355 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	15,248,355 - 15,332,036 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	14,670,109 - 14,755,010 (-)	NCBI		Celera
RGSC_v3.1	10	15,249,035 - 15,318,838 (-)	NCBI
Cytogenetic Map	10	q12	NCBI

Rab11fip3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	16,674,867 - 16,736,921 (-)	Ensembl
ChiLan1.0	NW_004955442	16,678,136 - 16,760,663 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAB11FIP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	655,285 - 762,195 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	4,443,945 - 4,546,504 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	497,005 - 512,487 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

Rab11fip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	112,372,898 - 112,438,098 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	467,171 - 535,964 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	470,307 - 535,958 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB11FIP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	41,211,684 - 41,285,502 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	41,211,683 - 41,284,998 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	41,300,071 - 41,308,378 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB11FIP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	358,951 - 445,150 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	30,715,524 - 30,813,892 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab11fip3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624913	1,258,743 - 1,340,349 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rab11fip3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	3,247,071 - 3,328,505 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in RAB11FIP3
423 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014114448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038538943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038602959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038667657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000031276 ⟹ ENSCAFP00000029106

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	40,021,805 - 40,047,273 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845050068 ⟹ ENSCAFP00845039257

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	40,361,997 - 40,442,678 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845050142 ⟹ ENSCAFP00845039313

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	40,361,997 - 40,442,678 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845050206 ⟹ ENSCAFP00845039364

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	40,362,006 - 40,442,678 (-)	Ensembl

RefSeq Acc Id:

XM_014114448 ⟹ XP_013969923

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	40,020,673 - 40,100,229 (-)	NCBI
Dog10K_Boxer_Tasha	6	41,283,374 - 41,363,061 (-)	NCBI

Sequence:

show sequence

GGCGGCGCGCGCCCCGACCCCGACCCCGACCCCGAGCCCGAACCCGGCGGGCCCCACCGGCCGG
CAGCCGCGCCCGCCCCGCGCCGGACACTCGGCGCCCCGGAGCCCGGAGCCTGCGCGGACGCCCG
CGGGGCCGCCAACCCCGGCCCCGGCCCGCGCCCGCCCTGCGCCGCGGAGCCCGACGGCGTCTGC
CCCCCGCCTTGCCCCGACGCCGCTCCTCTCCGCGGACGGGCTCTCGGCCACGGTCCGCTCGCGG
GCGGCGACGTGGGCTTGTTCCCCGGCTTCCCGGCGCCCGCGGGGGGCGAGCTGGCCCTGGACGT
GGGCCCCGAGGCCCCGGGGCGGCCCCCGGACTTCGGCCACCCCTGCCCGCTCGCGACCGAGCCC
GCCGCGTGTCCGGAGGACGGCCCCCGCCTCCGCGCCGTGTTTGACGCCCTGGACGGCGACGGGG
ACGGCTTGGTCCGCATCGAGGATTTCGTCCAGTTCGCAACGGTGTACGGCGCGGACCAGGTGAA
GGACTTAACAAAATACTTGGACCCCGGCGGGCTTGGTGTGATCAGTTTTGAGGACTTCTACCGA
GGGATCGCTGCCATCAGGAACGGAGAGTCCGATGGCCAGCTGTGCGGGGTCGCACCTGCCCAGG
ACGAGGAGCCGCCCGCCTGCCCCGATGAGTTCGACGACTTCGTTACCTTTGAGGCCAATGAGGT
GACAGACAGTGCATACATGGGGTCTGAGAGCACCTACAGCGAGTGTGAGACCTTCACCGACGAG
GACACGAGCACCCTGGTGCACCCTGAGCTGCAGCCTGAGTGCTTGGACACCATGGAGGATCCCG
GCCATGGTGCTCTGCTGCTGCTCCCGGGCAGATCCCACCTGCACAGCCAGTCCGTCGTCACTGT
GATAGGTGGCGAGGAGCATTTTGAGGACTATGGCGAGGGCAGCGAGGCAGAGCTGTCCCTGGAG
ACCCTCTGCAGTGGGGAGCATGGCTGCAGAGACCCCGCTTTCCCCACCCCCAGCACCGACCCGC
TTGCTGCAAAGCTGCACAGCATCCTCACTGATGAGGCTTTTGAGTTTTACTGTAGCCAGTGCCA
CAAACAAATCAACCGCCTCGAGGATCTTTCCGCTCGTCTGAGTGACCTTGAAAAGAATAGTCCA
GCGAAGCGGCTCTCCAGCAGGAAGGTGGCAAGGCACTTGCACCAATCGGGGGCCCTGACCATGG
AGTCCCTGCAGGACCCTGCCCCAGACCCCGTGGAGGGGATGGAGGAGGACATTGCTGACAAGGT
TGTGTTCCTGGAGAAGCGGGTGTCGGAGCTGGAGAAGGACACAGCTGCCAACGGGGAGCAGCAC
AGCCGCCTGAGGCAGGAGAACCTGCAGCTGGTGCACAGAGCCAATGCCCTTGAGGAGCAGCTGA
AGGAGCAGGAGCTGCGAGCCTGTGAGATGGCGCTGGAGGAGGCGCGGAGGCACCGAGAACTGGT
GTGCAAGTTGGAGCGGGAGCGGAGCATCGAGGTGGAGAGCCTGCAGGCCAGGCTGCAGCAGCTG
GACGAGGAGAACGGGGAGCTGAGGTCCTGCACGCCCTGCCTGAAGGCTAACATCGAGCGCCTGG
AGGAGGAGAAGCAGAAGTTGCTGGATGAGATTGAAGAGTTGTCCCTGCGGCTCAGTGATGAGCA
GGAGAACAGGAGGAAGCTGGGGGACAGGTTGAGTCACGAGAGGCACCAGTTCCAGAGGGACAAG
GAGGCCACCCAGGAGCTGATTGAGGACCTGCGCAGGCAGCTGGAGCACCTGCAGCTTTTCAAGC
TGGAGGCCGAGCAGAGGAGGGGCCGGGGCAGCAGCGTGGGCCTGCAGGAGTACAACAGCCGCAC
CCGCGAGAGTGAGCTGGAGCAGGAGGTCCGCAGGCTGAAGCAGGACAACCGGAACCTGAAGGAG
CAGAATGATGAGCTCAACGGGCAGATCATCAACCTGAGCATCCAGGGCGCCAAGAACCTCTTCT
CCACGTCCTTCTCAGAGTCCCTGGCTGCGGAGATCAGCTCTGTCTCCCGAGATGAGCTCATGGA
CGCAATTCAGAAGCAGGAGGAGATAAACTTCCGCCTGCAGGACTACATTGACCGCATCATCGTG
GCCATCATGGAGACCAACCCTTCCATCCTGGAGGTTAAATAGAGGCAGGAAGGCCCAGCCGGTG
GGCCCAGCACCCCATCCGCACCCAAGAGATGGCCACAGTGCGCGCACAGCTGAGACCAGCGGCT
GGGCTGGGGTGCATTGACGGGTCTGCAGAGGGAGAACAGTGGGAGCCCTGGGATCGGGGCCCAT
GCAGGAGAGGGTAGGACTGGGCCTACTGTCCGCAGAGATGCAGAGACCACATCTCAGGCTCAGG
CGAGCCCTTCTGCAAGCTCCCGCCCATGTGGAGACCCCCTGCCGCCCTGCCCATCAGGGAGGAG
AGGAAGGCTACATCCCCGCGGTGTGCTGCCCCGTGCCTCACCTGGACGTCACAGGGGCCCCAGG
ACCCTCTCGCCACAGGCGGTGCTGTGGGGAGTACAGGTGGGCGAGGCAGTGCACACTAGGGTCC
GCTAGAAGCCGCAGGACCCGTCAGCTGCTCAGGCCATGAGCTGCCAGGCGCACTGCAGTCCAGC
TTCAGACCCAGGGACCTCCAGGCCACGCAGCTGTTCCCACGGCCCAGACCCTTGCTGCACTAAC
CCCCCTGGGGGCCGGGGCAGGAACCTCCGCTCTGAGTCAGGACTCGCGAGTCGCTCCATGTGGA
GTGTGCTCTCCGGATGGGGTGCGGTGCGGGTGGAGAGTGGAGAGTGTCCTGGTGAGAAACGGCG
CCCCCGTGGCCGTGGCCACCCTGGGTGAGGTCCCGATCCCCAGGCCAGAGGCCCAGTGTCTGGA
AGCAGCTTCCTCTGGGAGTTGGAAGCCACTGATGTGGCCGTCCTTCCCCGAGCCACGTTCTGTG
GGAGGCCGGGCGGTGCAGGTTGTCAGGAGCAGAGAACAGCCCCCCAGCAACGTGGGGCTTCCTT
CGAGGAGGCCGTTGCCTGGCCCTGGTTCACCCCTGCCAGGCTCTGCCCACTGTGGGGGCTGCTG
GGCCTGCCCCCACCCTGAGCCTGAGCACGGACCAGGAGCCCCTGAGTGCTCCCGGGTGGGTCAA
GGCCCTACACACAGGCTGGCCATGCTGTGTGCGAGGGCGTGTGTGAGGCGTGTGTGTGCGTGTG
CGTGCGTGTGTGTGGGCGTGTGTGCCCCCTGCATCCTCCATCCTCCCTGTGGCCCACATTGTAC
ACTAAGATTTAAGACGTTGCCTCGTATTGTACATTTTGGGGAAAGCCTTGGGTGTAAATCAGTG
TAAACTTGCAGGAGAGATTTTTCTATCATGTAGAGTAGGTATTTTTTATAGATTGAAGGTTGAT
CAATTTTTTAATACTTCCAAGAGAGAAAACTATCTGTGTATACACATAAAATATATATATGTAT
GATAATAAATACTGGAACTCTG

hide sequence

RefSeq Acc Id:

XM_038480369 ⟹ XP_038336297

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	40,050,471 - 40,130,124 (-)	NCBI

RefSeq Acc Id:

XM_038538943 ⟹ XP_038394871

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	40,489,876 - 40,569,548 (-)	NCBI

RefSeq Acc Id:

XM_038602959 ⟹ XP_038458887

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	40,010,625 - 40,090,321 (-)	NCBI

RefSeq Acc Id:

XM_038667657 ⟹ XP_038523585

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	40,361,997 - 40,441,721 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013969923	(Get FASTA)	NCBI Sequence Viewer
	XP_038336297	(Get FASTA)	NCBI Sequence Viewer
	XP_038394871	(Get FASTA)	NCBI Sequence Viewer
	XP_038458887	(Get FASTA)	NCBI Sequence Viewer
	XP_038523585	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029106.4
	ENSCAFP00000067162.1
	ENSCAFP00000067485.1
	ENSCAFP00000073002.1
	ENSCAFP00030016804.1
	ENSCAFP00030016880.1
	ENSCAFP00845039257.1
	ENSCAFP00845039313.1
	ENSCAFP00845039364.1

RefSeq Acc Id:

XP_013969923 ⟸ XM_014114448

- UniProtKB:

A0A8C0K808 (UniProtKB/TrEMBL)

- Sequence:

show sequence

GGARPDPDPDPEPEPGGPHRPAAAPAPRRTLGAPEPGACADARGAANPGPGPRPPCAAEPDGVC
PPPCPDAAPLRGRALGHGPLAGGDVGLFPGFPAPAGGELALDVGPEAPGRPPDFGHPCPLATEP
AACPEDGPRLRAVFDALDGDGDGLVRIEDFVQFATVYGADQVKDLTKYLDPGGLGVISFEDFYR
GIAAIRNGESDGQLCGVAPAQDEEPPACPDEFDDFVTFEANEVTDSAYMGSESTYSECETFTDE
DTSTLVHPELQPECLDTMEDPGHGALLLLPGRSHLHSQSVVTVIGGEEHFEDYGEGSEAELSLE
TLCSGEHGCRDPAFPTPSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEKNSP
AKRLSSRKVARHLHQSGALTMESLQDPAPDPVEGMEEDIADKVVFLEKRVSELEKDTAANGEQH
SRLRQENLQLVHRANALEEQLKEQELRACEMALEEARRHRELVCKLERERSIEVESLQARLQQL
DEENGELRSCTPCLKANIERLEEEKQKLLDEIEELSLRLSDEQENRRKLGDRLSHERHQFQRDK
EATQELIEDLRRQLEHLQLFKLEAEQRRGRGSSVGLQEYNSRTRESELEQEVRRLKQDNRNLKE
QNDELNGQIINLSIQGAKNLFSTSFSESLAAEISSVSRDELMDAIQKQEEINFRLQDYIDRIIV
AIMETNPSILEVK

hide sequence

Ensembl Acc Id:

ENSCAFP00000029106 ⟸ ENSCAFT00000031276

RefSeq Acc Id:

XP_038336297 ⟸ XM_038480369

RefSeq Acc Id:

XP_038458887 ⟸ XM_038602959

RefSeq Acc Id:	XP_038523585 ⟸ XM_038667657
- UniProtKB:	A0A8C0K808 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038394871 ⟸ XM_038538943
- UniProtKB:	A0A8C0K808 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845039313 ⟸ ENSCAFT00845050142

Ensembl Acc Id:

ENSCAFP00845039364 ⟸ ENSCAFT00845050206

Ensembl Acc Id:

ENSCAFP00845039257 ⟸ ENSCAFT00845050068

Protein Domains

EF-hand FIP-RBD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000019670	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030010370	UniProtKB/TrEMBL
	ENSCAFG00845028338	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000031276.4	UniProtKB/TrEMBL
	ENSCAFT00000106335.1	UniProtKB/TrEMBL
	ENSCAFT00000108222.1	UniProtKB/TrEMBL
	ENSCAFT00000109919.1	UniProtKB/TrEMBL
	ENSCAFT00030019268.1	UniProtKB/TrEMBL
	ENSCAFT00030019354.1	UniProtKB/TrEMBL
	ENSCAFT00845050068.1	UniProtKB/TrEMBL
	ENSCAFT00845050142.1	UniProtKB/TrEMBL
	ENSCAFT00845050206.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.2440	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	FIP-RBD_C_sf	UniProtKB/TrEMBL
	Rab-bd_FIP-RBD	UniProtKB/TrEMBL
	Rab11-FIP3/4_dom	UniProtKB/TrEMBL
	Rab11-interacting_regulator	UniProtKB/TrEMBL
NCBI Gene	RAB11FIP3	ENTREZGENE
PANTHER	PTHR15726:SF6	UniProtKB/TrEMBL
	RAB11-FAMILY INTERACTING PROTEIN	UniProtKB/TrEMBL
Pfam	Rab11-FIP3	UniProtKB/TrEMBL
	RBD-FIP	UniProtKB/TrEMBL
PROSITE	EF_HAND_2	UniProtKB/TrEMBL
	FIP_RBD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF144270	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8C0K808	ENTREZGENE
	A0A8C0MU56_CANLF	UniProtKB/TrEMBL
	A0A8C0N767_CANLF	UniProtKB/TrEMBL
	A0A8I3PY48_CANLF	UniProtKB/TrEMBL
	A0A8I3PZW4_CANLF	UniProtKB/TrEMBL
	A0A8I3QP48_CANLF	UniProtKB/TrEMBL
	A0A8P0PFI8_CANLF	UniProtKB/TrEMBL
	A0A8P0PPX4_CANLF	UniProtKB/TrEMBL
UniProt Secondary	A0A8P0PG08	UniProtKB/TrEMBL
	A0A8P0SNI8	UniProtKB/TrEMBL
VGNC ID	VGNC:111678	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar